Gm23131 (predicted gene, 23131) - Rat Genome Database

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Gene: Gm23131 (predicted gene, 23131) Mus musculus
Analyze
Symbol: Gm23131
Name: predicted gene, 23131
RGD ID: 14997640
MGI Page MGI
Description:
Type: snorna
RefSeq Status: MODEL
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393148,059,723 - 148,059,854 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3148,059,723 - 148,059,854 (-)EnsemblGRCm39 Ensembl
GRCm383148,354,087 - 148,354,218 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3148,354,087 - 148,354,218 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map3H3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Gm23131
7 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:118
Count of miRNA genes:114
Interacting mature miRNAs:118
Transcripts:ENSMUST00000104253
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226733Tibmd6_mtibia midshaft diameter 6, 16 week (mouse)3101307316149805637Mouse
1301100Bdt2_mbone density traits 2 (mouse)Not determined3114736617148736784Mouse
10043919Afpq8_mabdominal fat percent QTL 8 (mouse)Not determined3119057332153057456Mouse
1558868Ses9_msalmonella enteritidis susceptibility 9 (mouse)Not determined3119057332153057456Mouse
4141935Tgq15_mtriglyceride QTL 15 (mouse)Not determined119318586153318586Mouse
4142449Tgq14_mtriglyceride QTL 14 (mouse)Not determined119318586153318586Mouse
1302151Lprm2_mlymphoproliferation modifier 2 (mouse)Not determined3119778857153779044Mouse
10412240Alpq6_malcohol preference QTL 6 (mouse)Not determined3120772078154772078Mouse
4142245Pstc1_mperiosteal circumference 1 (mouse)Not determined3126270248159745316Mouse
1301218Letohc1_mlow ethanol consumption 1 (mouse)Not determined3126352986159745316Mouse
1301347Fpli_mfasting plasma insulin (mouse)Not determined3126460514159745316Mouse
1301563Alcp3_malcohol preference locus 3 (mouse)Not determined3130736935159745316Mouse
11039523Tbbr1_mTrypanosoma brucei brucei response 1 (mouse)3130849375159745316Mouse
1300753Eae10_msusceptibility to experimental allergic encephalomyelitis 10 (mouse)Not determined3131736617148451178Mouse
1301528Loco1_mlocomotor activity 1 (mouse)Not determined3133461893159745316Mouse
1301222Scc7_mcolon tumor susceptibility 7 (mouse)Not determined3143352986156364108Mouse
25394566Skmw51_mskeletal muscle weight 51, gastroc (mouse)3146006623150688104Mouse
25394560Skmw52_mskeletal muscle weight 52, TA (mouse)3147738953151045666Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_004941737 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC115834 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000104253
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3148,059,723 - 148,059,854 (-)Ensembl
GRCm38.p6 Ensembl3148,354,087 - 148,354,218 (-)Ensembl
RefSeq Acc Id: XR_004941737
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393148,059,723 - 148,059,854 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000077441 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000104253 ENTREZGENE
MGD MGI:5452908 ENTREZGENE
NCBI Gene Gm23131 ENTREZGENE
PhenoGen Gm23131 PhenoGen