Gm24240 (predicted gene, 24240) - Rat Genome Database

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Gene: Gm24240 (predicted gene, 24240) Mus musculus
Analyze
Symbol: Gm24240
Name: predicted gene, 24240
RGD ID: 14996306
MGI Page MGI
Description:
Type: snorna
RefSeq Status: MODEL
RGD Orthologs
Human
Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391783,577,400 - 83,577,534 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1783,577,400 - 83,577,534 (+)EnsemblGRCm39 Ensembl
GRCm381783,269,971 - 83,270,105 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1783,269,971 - 83,270,105 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map17E4NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Gm24240
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391783,577,400 - 83,577,534 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1783,577,400 - 83,577,534 (+)EnsemblGRCm39 Ensembl
GRCm381783,269,971 - 83,270,105 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1783,269,971 - 83,270,105 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map17E4NCBI
LOC124900397
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381719,662,000 - 19,662,090 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1719,662,000 - 19,662,090 (+)EnsemblGRCh38hg38GRCh38
Cytogenetic Map17p11.2NCBI
T2T-CHM13v2.01719,610,615 - 19,610,705 (+)NCBIT2T-CHM13v2.0
LOC120098359
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81829,483,492 - 29,483,593 (+)NCBIGRCr8
mRatBN7.21829,209,482 - 29,209,583 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1829,209,482 - 29,209,583 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1830,579,129 - 30,579,230 (+)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map18p11NCBI

Variants

.
Variants in Gm24240
4 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:124
Count of miRNA genes:118
Interacting mature miRNAs:123
Transcripts:ENSMUST00000157785
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301338Lmr1_mleishmaniasis resistance 1 (mouse)Not determined171008134086996400Mouse
1357754Ahl3_mage related hearing loss 3 (mouse)Not determined175020395784204103Mouse
4141879Chlq9_mcirculating hormone level QTL 9 (mouse)Not determined175175842585758612Mouse
1357532Bmch7_mbone mechanical trait 7 (mouse)Not determined175175842585758612Mouse
1357447Heal13_mwound healing/regeneration 13 (mouse)Not determined175710765191107803Mouse
4141758Pstc5_mperiosteal circumference 5 (mouse)Not determined175710765191107803Mouse
4141011Bmd26_mbone mineral density 26 (mouse)Not determined175710765191107803Mouse
1300735Pgia20_mproteoglycan induced arthritis 20 (mouse)Not determined175710765191107803Mouse
12910536Nrq8a_mnoise-induced hearing loss resistant QTL 8a (mouse)175710765191107803Mouse
12910537Nrq8_mnoise-induced hearing loss resistant QTL 8 (mouse)175710765191107803Mouse
4142414Pregq4_mpregnancy QTL 4 (mouse)Not determined175753444793507179Mouse
4141040Hmtb9_mhemostasis and thrombosis rebleeding time 9 (mouse)Not determined5758908991589197Mouse
1301107Scc4_mcolon tumor susceptibility 4 (mouse)Not determined176230101095294699Mouse
11528551Sluc32_msusceptibility to lung cancer 32 (mouse)176230101095294699Mouse
1302017Aliq3_macute lung injury QTL 3 (mouse)Not determined176388554895294699Mouse
1301728Ffal1_mfree fatty acid level 1 (mouse)Not determined176521493895294699Mouse
14928308Manh82_mmandible shape 82 (mouse)176631524395294699Mouse
13464254Ifvrq3_minfluenza virus resistance QTL 3 (mouse)176795765583908089Mouse
4142256Nilac12_mnicotine induced locomotor activity 12 (mouse)Not determined176894131995294699Mouse
11039500Ltpr7c_mLeishmania tropica response 7c (mouse)177070119895294699Mouse
11039498Ltpr7b_mLeishmania tropica response 7b (mouse)177070119895294699Mouse
11039499Ltpr7a_mLeishmania tropica response 7a (mouse)177070119895294699Mouse
11039514Ltpr7_mLeishmania tropica response 7 (mouse)177070119895294699Mouse
1357528Nhdlq3_mnon-HDL QTL 3 (mouse)Not determined177339513295294699Mouse
4141195Nilac11_mnicotine induced locomotor activity 11 (mouse)Not determined177339513295294699Mouse
4141697Hbnr3_mHeligmosomoides bakeri nematode resistance 3 (mouse)Not determined7410765193507179Mouse
1357646Axtq3_manxiety QTL 3 (mouse)Not determined177458908990395270Mouse
1357552Aaj4_manxiety in A/J 4 (mouse)Not determined177458908990395270Mouse
14697708Stsl5_mSalmonella typhimurium susceptibility locus 5 (mouse)178080742991407428Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_004939755 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC122406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000157785
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1783,577,400 - 83,577,534 (+)Ensembl
GRCm38.p6 Ensembl1783,269,971 - 83,270,105 (+)Ensembl
RefSeq Acc Id: XR_004939755
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391783,577,400 - 83,577,534 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000088410 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000157785 ENTREZGENE
MGD MGI:5454017 ENTREZGENE
NCBI Gene Gm24240 ENTREZGENE
PhenoGen Gm24240 PhenoGen