ZPLD2P (zona pellucida like domain containing 2, pseudogene) - Rat Genome Database

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Gene: ZPLD2P (zona pellucida like domain containing 2, pseudogene) Homo sapiens
Analyze
Symbol: ZPLD2P
Name: zona pellucida like domain containing 2, pseudogene
RGD ID: 14747022
HGNC Page HGNC:54510
Description:
Type: ncrna (Ensembl: transcribed_unitary_pseudogene)
RefSeq Status: VALIDATED
RGD Orthologs
Mouse
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38126,225,320 - 26,229,840 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl126,216,112 - 26,229,844 (+)EnsemblGRCh38hg38GRCh38
GRCh38.p14 Ensembl126,209,741 - 26,227,840 (+)EnsemblGRCh38hg38GRCh38
GRCh37126,551,811 - 26,556,331 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map1p36.11NCBI
HuRef124,805,861 - 24,810,467 (+)NCBIHuRef
CHM1_1126,665,014 - 26,669,572 (+)NCBICHM1_1
T2T-CHM13v2.0126,062,759 - 26,067,279 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:12477932  


Genomics

Comparative Map Data
ZPLD2P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38126,225,320 - 26,229,840 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl126,216,112 - 26,229,844 (+)EnsemblGRCh38hg38GRCh38
GRCh38.p14 Ensembl126,209,741 - 26,227,840 (+)EnsemblGRCh38hg38GRCh38
GRCh37126,551,811 - 26,556,331 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map1p36.11NCBI
HuRef124,805,861 - 24,810,467 (+)NCBIHuRef
CHM1_1126,665,014 - 26,669,572 (+)NCBICHM1_1
T2T-CHM13v2.0126,062,759 - 26,067,279 (+)NCBIT2T-CHM13v2.0
Zpld2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394133,918,115 - 133,930,315 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4133,918,115 - 133,930,315 (-)EnsemblGRCm39 Ensembl
GRCm384134,190,804 - 134,203,004 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4134,190,804 - 134,203,004 (-)EnsemblGRCm38mm10GRCm38
MGSCv374133,746,719 - 133,758,919 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364133,462,880 - 133,475,080 (-)NCBIMGSCv36mm8
Celera4132,369,432 - 132,381,874 (-)NCBICelera
Cytogenetic Map4D2.3NCBI
cM Map466.5NCBI


Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 1p36.11-34.2(chr1:24381206-41401517)x3 copy number gain See cases [RCV000138891] Chr1:24381206..41401517 [GRCh38]
Chr1:24707696..41886350 [GRCh37]
Chr1:24580283..41658937 [NCBI36]
Chr1:1p36.11-34.2		 pathogenic
GRCh38/hg38 1p36.33-35.1(chr1:99125-34026935)x3 copy number gain Trisomy 12p [RCV003447845] Chr1:99125..34026935 [GRCh38]
Chr1:1p36.33-35.1		 pathogenic
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:772
Count of miRNA genes:496
Interacting mature miRNAs:545
Transcripts:ENST00000428812, ENST00000447201, ENST00000448341, ENST00000451482
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 413 6 6 6 15 407
Low 339 436 1263 463 190 421 832 554 2937 325 623 420 43 648
Below cutoff 1951 1998 42 146 1050 31 3119 1569 781 75 798 748 129 1 1043 1886 4 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000428812
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl126,209,741 - 26,227,840 (+)Ensembl
RefSeq Acc Id: ENST00000447201
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl126,216,112 - 26,225,162 (+)Ensembl
RefSeq Acc Id: ENST00000448341
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl126,216,114 - 26,225,123 (+)Ensembl
RefSeq Acc Id: ENST00000451482
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl126,225,315 - 26,229,844 (+)Ensembl
RefSeq Acc Id: ENST00000686909
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl126,225,320 - 26,228,145 (+)Ensembl
RefSeq Acc Id: ENST00000688339
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl126,225,315 - 26,228,145 (+)Ensembl
RefSeq Acc Id: ENST00000692018
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl126,225,315 - 26,229,844 (+)Ensembl
RefSeq Acc Id: ENST00000702541
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl126,225,528 - 26,229,844 (+)Ensembl
RefSeq Acc Id: ENST00000713592
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl126,225,111 - 26,229,844 (+)Ensembl
RefSeq Acc Id: NR_110698
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38126,225,320 - 26,229,840 (+)NCBI
T2T-CHM13v2.0126,062,759 - 26,067,279 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:54510 AgrOrtholog
COSMIC ZPLD2P COSMIC
Ensembl Genes ENSG00000236155 Ensembl
  ENSG00000293494 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000451482 ENTREZGENE
GTEx ENSG00000236155 GTEx
  ENSG00000293494 GTEx
HGNC ID HGNC:54510 ENTREZGENE
Human Proteome Map ZPLD2P Human Proteome Map
NCBI Gene ZPLD2P ENTREZGENE
RNAcentral URS000075ADAE RNACentral