LINC02755 (long intergenic non-protein coding RNA 2755) - Rat Genome Database

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Gene: LINC02755 (long intergenic non-protein coding RNA 2755) Homo sapiens
Analyze
Symbol: LINC02755
Name: long intergenic non-protein coding RNA 2755
RGD ID: 14694899
HGNC Page HGNC:54275
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381129,335,878 - 29,594,350 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1129,335,878 - 29,989,328 (-)EnsemblGRCh38hg38GRCh38
Cytogenetic Map11p14.1NCBI
CHM1_11129,356,149 - 29,551,974 (-)NCBICHM1_1
T2T-CHM13v2.01129,470,799 - 29,729,242 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in LINC02755
6 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 11p15.5-13(chr11:202758-31726224)x3 copy number gain See cases [RCV000053613] Chr11:202758..31726224 [GRCh38]
Chr11:202758..31747772 [GRCh37]
Chr11:192758..31704348 [NCBI36]
Chr11:11p15.5-13		 pathogenic
GRCh38/hg38 11p14.2-13(chr11:26368962-35252976)x1 copy number loss See cases [RCV000135295] Chr11:26368962..35252976 [GRCh38]
Chr11:26390509..35274523 [GRCh37]
Chr11:26347085..35231099 [NCBI36]
Chr11:11p14.2-13		 pathogenic
GRCh38/hg38 11p14.3-13(chr11:24595399-31096539)x3 copy number gain See cases [RCV000134877] Chr11:24595399..31096539 [GRCh38]
Chr11:24616945..31118086 [GRCh37]
Chr11:24573521..31074662 [NCBI36]
Chr11:11p14.3-13		 pathogenic
GRCh38/hg38 11p15.1-13(chr11:20079474-34463996)x1 copy number loss See cases [RCV000142499] Chr11:20079474..34463996 [GRCh38]
Chr11:20101020..34485543 [GRCh37]
Chr11:20057596..34442119 [NCBI36]
Chr11:11p15.1-13		 pathogenic
GRCh38/hg38 11p14.3-12(chr11:22550115-38199159)x1 copy number loss See cases [RCV000052648] Chr11:22550115..38199159 [GRCh38]
Chr11:22571661..38220709 [GRCh37]
Chr11:22528237..38177285 [NCBI36]
Chr11:11p14.3-12		 pathogenic
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:103
Count of miRNA genes:58
Interacting mature miRNAs:58
Transcripts:ENST00000525097, ENST00000528553
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium 1 1
Low 2 69 2 9 2 9 6 12 4 217 4 1 3
Below cutoff 48 169 261 12 28 10 216 153 711 15 187 68 6 214 45

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000525097
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1129,335,878 - 29,594,295 (-)Ensembl
RefSeq Acc Id: ENST00000528553
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1129,335,879 - 29,989,304 (-)Ensembl
RefSeq Acc Id: ENST00000653616
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1129,335,880 - 29,594,350 (-)Ensembl
RefSeq Acc Id: ENST00000657392
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1129,335,879 - 29,989,328 (-)Ensembl
RefSeq Acc Id: NR_183753
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381129,335,878 - 29,594,350 (-)NCBI
T2T-CHM13v2.01129,470,799 - 29,729,242 (-)NCBI
RefSeq Acc Id: NR_183754
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381129,335,878 - 29,594,350 (-)NCBI
T2T-CHM13v2.01129,470,799 - 29,729,242 (-)NCBI

Additional Information

Database Acc Id Source(s)
COSMIC LINC02755 COSMIC
Ensembl Genes ENSG00000254530 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000525097 ENTREZGENE
  ENST00000653616 ENTREZGENE
GTEx ENSG00000254530 GTEx
HGNC ID HGNC:54275 ENTREZGENE
Human Proteome Map LINC02755 Human Proteome Map
NCBI Gene LINC02755 ENTREZGENE
RNAcentral URS00026A1B31 RNACentral
  URS00026A1BAC RNACentral