Mir29b-3 (microRNA mir-29b-3) - Rat Genome Database

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Gene: Mir29b-3 (microRNA mir-29b-3) Rattus norvegicus
Analyze
Symbol: Mir29b-3
Name: microRNA mir-29b-3
RGD ID: 14398586
Description: microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: rno-mir-29b-3
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
NCBI Annotation Information: Genome Annotation Status: not in current annotation release
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2 Ensembl13106,570,367 - 106,570,456 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl138,238,376 - 38,238,459 (+)EnsemblRnor6.0rn6Rnor6.0
Cytogenetic Map1 NCBI


References
Additional References at PubMed
PMID:15345052   PMID:16381832   PMID:16766679   PMID:17604727   PMID:17805466   PMID:20403161   PMID:24819309   PMID:25389122   PMID:25636075   PMID:26187577   PMID:26702050   PMID:28000044  
PMID:28061433   PMID:28164126   PMID:30025410   PMID:30560317   PMID:30964155   PMID:31799683   PMID:32165827   PMID:32812641   PMID:33175349   PMID:33520084   PMID:35322290   PMID:35699870  
PMID:36052307   PMID:36315357  


Genomics


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NR_128700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC118802 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000053760
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl13106,570,367 - 106,570,456 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000071880
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl138,238,376 - 38,238,459 (+)Ensembl
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000035637 Ensembl
  ENSRNOG00000049256 Ensembl
miRBase MI0031777 ENTREZGENE
NCBI Gene Mir29b-3 ENTREZGENE
PhenoGen Mir29b-3 PhenoGen
RatGTEx ENSRNOG00000035637 RatGTEx
  ENSRNOG00000049256 RatGTEx
RNAcentral URS00001E96DA RNACentral
  URS000024463E RNACentral
  URS0000403C02 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-23 Mir29b-3  microRNA mir-29b-3      Symbol and Name status set to provisional 70820 PROVISIONAL