LOC100623167 (tripartite motif-containing protein 43-like) - Rat Genome Database

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Gene: LOC100623167 (tripartite motif-containing protein 43-like) Sus scrofa
Analyze
Symbol: LOC100623167
Name: tripartite motif-containing protein 43-like
RGD ID: 14292501
Description: ENCODES a protein that exhibits metal ion binding (inferred); ubiquitin protein ligase activity (inferred); zinc ion binding (inferred); INVOLVED IN innate immune response (inferred); protein ubiquitination (inferred); regulation of gene expression (inferred); FOUND IN cytoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1922,965,206 - 22,971,694 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2925,617,377 - 25,622,458 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA,IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
LOC100623167
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1922,965,206 - 22,971,694 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2925,617,377 - 25,622,458 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TRIM43B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38295,477,008 - 95,484,754 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl295,477,008 - 95,484,754 (-)EnsemblGRCh38hg38GRCh38
GRCh37296,142,756 - 96,150,502 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36295,506,437 - 95,514,206 (-)NCBINCBI36Build 36hg18NCBI36
Celera292,133,690 - 92,141,541 (-)NCBICelera
Cytogenetic Map2q11.1NCBI
HuRef290,143,148 - 90,145,576 (-)NCBIHuRef
CHM1_1296,147,083 - 96,154,889 (-)NCBICHM1_1
T2T-CHM13v2.0295,983,448 - 95,991,236 (-)NCBIT2T-CHM13v2.0
Trim43b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39988,966,677 - 88,974,888 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl988,966,677 - 88,974,888 (-)EnsemblGRCm39 Ensembl
GRCm38989,084,624 - 89,092,835 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl989,084,624 - 89,092,835 (-)EnsemblGRCm38mm10GRCm38
MGSCv37988,979,462 - 88,987,673 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36988,882,506 - 88,890,728 (-)NCBIMGSCv36mm8
Celera987,845,012 - 87,845,617 (-)NCBICelera
Cytogenetic Map9E3.1NCBI
cM Map947.24NCBI

Variants

.
Variants in LOC100623167
236 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system endocrine system nervous system renal system
High
Medium
Low 1 14 1
Below cutoff 3 5

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021063937 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000070 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_021063937   ⟹   XP_020919596
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1922,965,206 - 22,971,694 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020919596 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000020492
  ENSSSCP00000020492.2
  ENSSSCP00050000286.1
  ENSSSCP00060029885.1
Reference Protein Sequences
RefSeq Acc Id: XP_020919596   ⟸   XM_021063937
- UniProtKB: A0A8D1VWY3 (UniProtKB/TrEMBL),   I3L8Y1 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
B box-type   B30.2/SPRY   RING-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000028810 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00050001018 UniProtKB/TrEMBL
  ENSSSCG00060051028 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000030083 ENTREZGENE
  ENSSSCT00000030083.4 UniProtKB/TrEMBL
  ENSSSCT00050001168.1 UniProtKB/TrEMBL
  ENSSSCT00060069421.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.920 UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro B30.2/SPRY UniProtKB/TrEMBL
  B30.2/SPRY_sf UniProtKB/TrEMBL
  Butyrophylin_SPRY UniProtKB/TrEMBL
  ConA-like_dom_sf UniProtKB/TrEMBL
  SPRY_dom UniProtKB/TrEMBL
  Znf_B-box UniProtKB/TrEMBL
  Znf_RING UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
  Znf_RING_CS UniProtKB/TrEMBL
NCBI Gene LOC100623167 ENTREZGENE
PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIM UniProtKB/TrEMBL
  TRIPARTITE MOTIF-CONTAINING PROTEIN 43B UniProtKB/TrEMBL
Pfam SPRY UniProtKB/TrEMBL
  zf-B_box UniProtKB/TrEMBL
  zf-C3HC4_4 UniProtKB/TrEMBL
PRINTS BUTYPHLNCDUF UniProtKB/TrEMBL
PROSITE B302_SPRY UniProtKB/TrEMBL
  ZF_BBOX UniProtKB/TrEMBL
  ZF_RING_1 UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/TrEMBL
SMART BBOX UniProtKB/TrEMBL
  RING UniProtKB/TrEMBL
Superfamily-SCOP B-box zinc-binding domain UniProtKB/TrEMBL
  RING/U-box UniProtKB/TrEMBL
  SSF49899 UniProtKB/TrEMBL
UniProt A0A8D1VWY3 ENTREZGENE, UniProtKB/TrEMBL
  I3L8Y1 ENTREZGENE, UniProtKB/TrEMBL