MAJIN (membrane anchored junction protein)

Gene: MAJIN (membrane anchored junction protein) Sus scrofa

Analyze

Symbol:

MAJIN

Name:

membrane anchored junction protein

RGD ID:

14290380

Description:

INVOLVED IN double-strand break repair involved in meiotic recombination (ortholog); homologous chromosome pairing at meiosis (ortholog); meiotic attachment of telomere to nuclear envelope (ortholog); ASSOCIATED WITH Bardet-Biedl syndrome (ortholog); glycogen storage disease V (ortholog); high grade glioma (ortholog); FOUND IN chromosome, telomeric region (ortholog); nuclear envelope (ortholog); nuclear inner membrane (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

membrane-anchored junction protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	2	7,209,376 - 7,244,400 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	6,341,414 - 6,375,543 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Bardet-Biedl syndrome (ISO)

glycogen storage disease V (ISO)

high grade glioma (ISO)

intellectual disability (ISO)

leukocyte adhesion deficiency 3 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

double-strand break repair involved in meiotic recombination (ISO)

homologous chromosome pairing at meiosis (ISO)

meiotic attachment of telomere to nuclear envelope (ISO)

meiotic telomere clustering (ISO)

oogenesis (ISO)

spermatogenesis (ISO)

Cellular Component

chromosome, telomeric region (ISO)

nuclear envelope (ISO)

nuclear inner membrane (ISO)

Molecular Function

protein binding (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

MAJIN
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	2	7,209,376 - 7,244,400 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	6,341,414 - 6,375,543 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

MAJIN
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	64,938,230 - 64,972,108 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	64,937,517 - 64,972,108 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	64,705,702 - 64,739,580 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	64,462,505 - 64,495,934 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	11	62,031,898 - 62,065,337 (-)	NCBI		Celera
Cytogenetic Map	11	q13.1	NCBI
HuRef	11	61,032,979 - 61,066,378 (-)	NCBI		HuRef
CHM1_1	11	64,589,724 - 64,623,131 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	11	64,931,487 - 64,965,377 (-)	NCBI		T2T-CHM13v2.0

Majin
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	19	6,234,358 - 6,274,349 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	19	6,234,418 - 6,274,255 (+)	Ensembl		GRCm39 Ensembl
GRCm38	19	6,184,345 - 6,224,230 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	19	6,184,388 - 6,224,225 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	19	6,184,410 - 6,224,219 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	19	6,195,680 - 6,223,566 (+)	NCBI		MGSCv36	mm8
Celera	19	6,057,061 - 6,096,527 (+)	NCBI		Celera
Cytogenetic Map	19	A	NCBI
cM Map	19	4.34	NCBI

Majin
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	212,917,038 - 212,953,377 (+)	NCBI		GRCr8
mRatBN7.2	1	203,487,777 - 203,524,098 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	203,488,069 - 203,524,092 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	211,836,701 - 211,873,191 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	218,933,403 - 218,969,423 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	211,624,465 - 211,660,487 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	221,540,551 - 221,594,124 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	221,558,093 - 221,594,118 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	228,492,980 - 228,531,270 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	208,963,378 - 208,999,409 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	1	201,021,823 - 201,057,652 (+)	NCBI		Celera
Cytogenetic Map	1	q43	NCBI

Majin
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955422	20,216,773 - 20,249,042 (+)	NCBI	ChiLan1.0	ChiLan1.0

MAJIN
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	66,165,344 - 66,199,419 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	67,208,084 - 67,246,142 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	60,294,618 - 60,328,902 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	63,635,508 - 63,669,168 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	63,635,508 - 63,669,168 (-)	Ensembl	panpan1.1		panPan2

GPHA2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	18	52,211,748 - 52,244,591 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	18	52,211,716 - 52,240,823 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1 Ensembl	18	52,243,097 - 52,244,589 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	18	50,819,087 - 50,851,923 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	18	53,252,628 - 53,285,478 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	18	53,252,596 - 53,285,493 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	18	52,347,897 - 52,380,874 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	18	51,933,021 - 51,965,848 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	18	52,717,245 - 52,750,181 (+)	NCBI		UU_Cfam_GSD_1.0

Majin
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	7,931,206 - 7,959,499 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936599	4,382,761 - 4,399,572 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936599	4,382,751 - 4,400,400 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MAJIN
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	9,260,903 - 9,295,888 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	9,275,234 - 9,295,590 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	106,646,427 - 106,682,255 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Majin
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624767	21,423,175 - 21,468,227 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624767	21,423,114 - 21,468,909 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in MAJIN
1521 total Variants

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005660723	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU606982	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_005660723 ⟹ XP_005660780

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	2	7,209,376 - 7,244,400 (+)	NCBI

Sequence:

show sequence

TCTGTCCCGCGCGTGGCACGAGCGGAGGCGCGGGCGAGAGGCCGAGCGAGTCCGCCAACCAGGC
TTCGTGAGAGAGAGGTTATCATTGGAAGCAATGAGTTTAAAACCTTTCACCTACCCTTTTCCTG
AGACAAGGTTTCTTCATGCTGGACCCAATGTGTATAAATTCAAAATTAGATATGGCAACAACAT
CAGAGAGGAAGAGGTAGAAAATAAGGAAGTCATCATCCAGGAGCTGGAGGATTCTATTCGTGTA
GTCTTGGGAAATTTGGACAATCTGCAGCCATTTGCCACAGGGCACTTCATTGTGTTTCCCTATA
AAAGCAAATGGGAGAGTGTGTCCCACCTGAAATTCAAACACGGGGATGTTGTCTTGGTCCCTTA
TCCATTTGTTTTCACTCTATATGTGGAGATGAAACGGTTTCACGAAAATCTGTCACCTGGTAAA
CCAATAAACAACAGTCCTCTCGGGTTGGTCCTGGCAGAGAGGAAAGCAGCAGGAGCCACGATGA
GGAAACGAAAACGCATGGAAGTACCCAGCTCTCCCAGCAGGCCAGGACTGGACAGGGCCAAGAT
GGGGACTTCCAACCAAGGGCTCAGCAAAAAGAAGCCCCTTATGGAAACTAGGAGGAACAAGGCA
AGAAAAACCCAGCAGGAATGGCAGGAAACTCCAGCATTTGCTATCACTGATGTCCAGGACCAGG
ATTCTAAGTGGGGAGACAGCCCAGCAGGGAAGACTGTCCCACCATTGCAGCAAAACAATCCCCC
TCCACCTGAAGGACCCGGAGATCTGCAAACCAGTGGCTTCTTTGGGTTTCTAAGCTCTCTCTTC
CCGTTTCGGTATTTCTTCAGAAAGAGCACCCAGTGAGACTTCTGAGTGCAGCGGCGGGAAGGGC
TCTGTCTCTTGCAGTGACTCCCCCAGTCCACCCTCTGCTTATGACATTCCAGTCACGGGATCCG
AGAGCCCCAACTCCCTGAGTCCTCCCGCGGGTTCGTCCAGTCATTTGCCTCTTCACAATGGAAT
GTTTTTTCCCAATTTAAAACACTAAGAAAAGAATGTAACTTTCTGAAATGCTCTAGTCTGAGAA
TTTTACTGCTCCATGGGCCAGTTAGGTCTTTCATCTCCAGCACTTAGATTCCTAATGACAATAA
ATTATTTATGAAGAGTTATTGACTAAATTTAGTGAGCTAGAAAGAGGGAAAGAGAGCAAACTCT
TTCCTCAAGATATAGGGAAACGTCCATGCCTGAAACCTCCCCGGGGTCTCCCTGGTTACTGTCC
ACAGAACGCTTTGGGTGGGTGGGGTCTGAACCTGACCTCAAATCTTTTTTTTTTTTTTT

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Protein Sequences


Protein RefSeqs	XP_005660780	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_005660780 ⟸ XM_005660723

- Sequence:

show sequence

MSLKPFTYPFPETRFLHAGPNVYKFKIRYGNNIREEEVENKEVIIQELEDSIRVVLGNLDNLQP
FATGHFIVFPYKSKWESVSHLKFKHGDVVLVPYPFVFTLYVEMKRFHENLSPGKPINNSPLGLV
LAERKAAGATMRKRKRMEVPSSPSRPGLDRAKMGTSNQGLSKKKPLMETRRNKARKTQQEWQET
PAFAITDVQDQDSKWGDSPAGKTVPPLQQNNPPPPEGPGDLQTSGFFGFLSSLFPFRYFFRKST
Q

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Additional Information

External Database Links

Database	Acc Id	Source(s)
NCBI Gene	MAJIN	ENTREZGENE
VGNC ID	VGNC:89958	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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