ANKRD24 (ankyrin repeat domain 24) - Rat Genome Database

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Gene: ANKRD24 (ankyrin repeat domain 24) Sus scrofa
Analyze
Symbol: ANKRD24
Name: ankyrin repeat domain 24
RGD ID: 14271933
Description: INVOLVED IN auditory receptor cell stereocilium organization (ortholog); sensory perception of sound (ortholog); ASSOCIATED WITH amenorrhea (ortholog); FOUND IN plasma membrane (ortholog); stereocilium (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ankyrin repeat domain-containing protein 24
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl274,540,870 - 74,567,837 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1274,540,868 - 74,568,402 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2275,035,515 - 75,063,029 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
amenorrhea  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
ANKRD24
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl274,540,870 - 74,567,837 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1274,540,868 - 74,568,402 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2275,035,515 - 75,063,029 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ANKRD24
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38194,182,689 - 4,224,814 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl194,182,689 - 4,224,814 (+)EnsemblGRCh38hg38GRCh38
GRCh37194,182,686 - 4,224,811 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36194,134,351 - 4,175,811 (+)NCBINCBI36Build 36hg18NCBI36
Celera194,122,806 - 4,164,282 (+)NCBICelera
Cytogenetic Map19p13.3NCBI
HuRef193,946,703 - 3,987,932 (+)NCBIHuRef
CHM1_1194,182,897 - 4,224,911 (+)NCBICHM1_1
T2T-CHM13v2.0194,165,992 - 4,208,117 (+)NCBIT2T-CHM13v2.0
Ankrd24
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391081,464,352 - 81,483,446 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1081,464,374 - 81,483,444 (+)EnsemblGRCm39 Ensembl
GRCm381081,627,821 - 81,647,612 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1081,628,540 - 81,647,610 (+)EnsemblGRCm38mm10GRCm38
MGSCv371081,091,285 - 81,110,357 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361081,031,764 - 81,050,739 (+)NCBIMGSCv36mm8
Celera1082,651,719 - 82,670,799 (+)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1039.72NCBI
Ankrd24
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr878,712,720 - 8,731,910 (-)NCBIGRCr8
mRatBN7.278,061,634 - 8,081,142 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl78,061,953 - 8,081,142 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx710,948,415 - 10,967,561 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0712,824,079 - 12,843,227 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0710,691,289 - 10,710,616 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0710,917,359 - 10,937,522 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl710,917,367 - 10,936,415 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0711,086,844 - 11,105,541 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.479,534,366 - 9,554,062 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.179,534,367 - 9,553,126 (-)NCBI
Celera76,252,939 - 6,272,218 (-)NCBICelera
Cytogenetic Map7q11NCBI
Ankrd24
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554954,621,059 - 4,636,235 (-)NCBIChiLan1.0ChiLan1.0
ANKRD24
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2208,580,194 - 8,620,920 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1197,810,324 - 7,851,035 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0193,206,152 - 3,246,886 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1194,169,761 - 4,194,635 (+)NCBIpanpan1.1PanPan1.1panPan2
ANKRD24
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12055,391,381 - 55,404,538 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2055,391,652 - 55,404,544 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2055,118,278 - 55,144,091 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02056,049,533 - 56,075,317 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2056,050,846 - 56,072,131 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12055,109,392 - 55,133,079 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02055,590,607 - 55,614,260 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02055,789,482 - 55,815,285 (-)NCBIUU_Cfam_GSD_1.0
Ankrd24
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118215,415,503 - 215,432,157 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365882,403,454 - 2,419,279 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ANKRD24
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.163,932,677 - 3,972,476 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl63,949,211 - 3,972,176 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660814,243,188 - 4,286,177 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ankrd24
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248285,410,032 - 5,441,824 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ANKRD24
396 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 5 2 3 2 2 23 1 1 2
Below cutoff 5 2 3 1 2 1

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_013994770 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021084068 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021084069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021084070 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021084071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021084072 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021084073 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021084074 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021084075 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021084076 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021084077 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021084078 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021084079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021084081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021084082 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021084083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU929466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GFLN01074723 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSSCT00000014743   ⟹   ENSSSCP00000014345
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl274,540,862 - 74,557,145 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000048578   ⟹   ENSSSCP00000032936
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl274,540,868 - 74,557,719 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000049540   ⟹   ENSSSCP00000044155
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl274,540,868 - 74,557,183 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000059794   ⟹   ENSSSCP00000041382
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl274,540,868 - 74,557,183 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000063857   ⟹   ENSSSCP00000041919
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl274,540,870 - 74,567,837 (-)Ensembl
RefSeq Acc Id: XM_013994770   ⟹   XP_013850224
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1274,540,868 - 74,568,401 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021084068   ⟹   XP_020939727
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1274,540,868 - 74,568,402 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021084069   ⟹   XP_020939728
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1274,540,868 - 74,568,402 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021084070   ⟹   XP_020939729
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1274,540,868 - 74,568,402 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021084071   ⟹   XP_020939730
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1274,540,868 - 74,568,402 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021084072   ⟹   XP_020939731
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1274,540,868 - 74,568,401 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021084073   ⟹   XP_020939732
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1274,540,868 - 74,567,668 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021084074   ⟹   XP_020939733
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1274,540,868 - 74,568,400 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021084075   ⟹   XP_020939734
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1274,540,868 - 74,568,400 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021084076   ⟹   XP_020939735
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1274,540,868 - 74,555,964 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021084077   ⟹   XP_020939736
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1274,540,868 - 74,564,849 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021084078   ⟹   XP_020939737
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1274,540,868 - 74,555,811 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021084079   ⟹   XP_020939738
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1274,540,868 - 74,555,964 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021084081   ⟹   XP_020939740
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1274,540,868 - 74,555,822 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021084082   ⟹   XP_020939741
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1274,540,868 - 74,568,399 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021084083   ⟹   XP_020939742
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1274,540,868 - 74,555,822 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_020939727   ⟸   XM_021084068
- Peptide Label: isoform X1
- UniProtKB: A0A8D1HPT9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020939730   ⟸   XM_021084071
- Peptide Label: isoform X3
- UniProtKB: A0A4X1VM83 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020939729   ⟸   XM_021084070
- Peptide Label: isoform X3
- UniProtKB: A0A4X1VM83 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020939728   ⟸   XM_021084069
- Peptide Label: isoform X3
- UniProtKB: A0A4X1VM83 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020939731   ⟸   XM_021084072
- Peptide Label: isoform X4
- UniProtKB: A0A4X1VM75 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013850224   ⟸   XM_013994770
- Peptide Label: isoform X2
- UniProtKB: A0A8D1HPT9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020939733   ⟸   XM_021084074
- Peptide Label: isoform X5
- UniProtKB: A0A8D1HPT9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020939734   ⟸   XM_021084075
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_020939741   ⟸   XM_021084082
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_020939732   ⟸   XM_021084073
- Peptide Label: isoform X4
- UniProtKB: A0A4X1VM75 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020939736   ⟸   XM_021084077
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_020939738   ⟸   XM_021084079
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_020939735   ⟸   XM_021084076
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_020939742   ⟸   XM_021084083
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_020939740   ⟸   XM_021084081
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_020939737   ⟸   XM_021084078
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: ENSSSCP00000044155   ⟸   ENSSSCT00000049540
RefSeq Acc Id: ENSSSCP00000032936   ⟸   ENSSSCT00000048578
RefSeq Acc Id: ENSSSCP00000041382   ⟸   ENSSSCT00000059794
RefSeq Acc Id: ENSSSCP00000014345   ⟸   ENSSSCT00000014743
RefSeq Acc Id: ENSSSCP00000041919   ⟸   ENSSSCT00000063857


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000013497 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025024787 UniProtKB/TrEMBL
  ENSSSCG00035016659 UniProtKB/TrEMBL
  ENSSSCG00040043881 UniProtKB/TrEMBL
  ENSSSCG00045018180 UniProtKB/TrEMBL
  ENSSSCG00050027497 UniProtKB/TrEMBL
  ENSSSCG00055026802 UniProtKB/TrEMBL
  ENSSSCG00065073627 UniProtKB/TrEMBL
  ENSSSCG00070026305 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000063857 ENTREZGENE
  ENSSSCT00000063857.3 UniProtKB/TrEMBL
  ENSSSCT00025033790.1 UniProtKB/TrEMBL
  ENSSSCT00025034257.1 UniProtKB/TrEMBL
  ENSSSCT00035021387.1 UniProtKB/TrEMBL
  ENSSSCT00040059402.1 UniProtKB/TrEMBL
  ENSSSCT00045031112.1 UniProtKB/TrEMBL
  ENSSSCT00050037094.1 UniProtKB/TrEMBL
  ENSSSCT00055053308.1 UniProtKB/TrEMBL
  ENSSSCT00065101571.1 UniProtKB/TrEMBL
  ENSSSCT00070052720.1 UniProtKB/TrEMBL
  ENSSSCT00070052732.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.20 UniProtKB/TrEMBL
InterPro Ankyrin_rpt UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/TrEMBL
NCBI Gene ANKRD24 ENTREZGENE
PANTHER ANKYRIN REPEAT CONTAINING UniProtKB/TrEMBL
  ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 24 UniProtKB/TrEMBL
Pfam Ank UniProtKB/TrEMBL
  Ank_2 UniProtKB/TrEMBL
PROSITE ANK_REP_REGION UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/TrEMBL
SMART ANK UniProtKB/TrEMBL
Superfamily-SCOP SSF48403 UniProtKB/TrEMBL
UniProt A0A287AD34_PIG UniProtKB/TrEMBL
  A0A4X1VM75 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1VM83 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1HPT9 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:85330 ENTREZGENE