NOP53 (NOP53 ribosome biogenesis factor) - Rat Genome Database

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Gene: NOP53 (NOP53 ribosome biogenesis factor) Sus scrofa
Analyze
Symbol: NOP53
Name: NOP53 ribosome biogenesis factor (Ensembl:NOP53 ribosome biosis factor)
RGD ID: 14271410
Description: ENCODES a protein that exhibits 5S rRNA binding (inferred); identical protein binding (inferred); p53 binding (inferred); INVOLVED IN ribosomal large subunit assembly (ortholog); ASSOCIATED WITH polycystic ovary syndrome (ortholog); FOUND IN rDNA heterochromatin (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: glioma tumor suppressor candidate region gene 2; GLTSCR2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl653,443,385 - 53,452,017 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1653,443,453 - 53,451,707 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2648,973,573 - 48,982,147 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:30032202  


Genomics

Comparative Map Data
NOP53
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl653,443,385 - 53,452,017 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1653,443,453 - 53,451,707 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2648,973,573 - 48,982,147 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NOP53
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381947,745,546 - 47,757,058 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1947,745,546 - 47,757,058 (+)EnsemblGRCh38hg38GRCh38
GRCh371948,248,803 - 48,260,315 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361952,940,620 - 52,952,127 (+)NCBINCBI36Build 36hg18NCBI36
Build 341952,940,619 - 52,952,126NCBI
Celera1945,054,495 - 45,066,024 (+)NCBICelera
Cytogenetic Map19q13.33NCBI
HuRef1944,675,424 - 44,686,829 (+)NCBIHuRef
CHM1_11948,251,102 - 48,262,632 (+)NCBICHM1_1
T2T-CHM13v2.01950,576,356 - 50,587,868 (+)NCBIT2T-CHM13v2.0
Nop53
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39715,671,760 - 15,680,033 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl715,670,108 - 15,679,999 (-)EnsemblGRCm39 Ensembl
GRCm38715,937,835 - 15,946,108 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl715,936,183 - 15,946,074 (-)EnsemblGRCm38mm10GRCm38
MGSCv37716,523,184 - 16,531,457 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36715,096,357 - 15,104,578 (-)NCBIMGSCv36mm8
Celera713,136,540 - 13,144,813 (-)NCBICelera
Cytogenetic Map7A2NCBI
cM Map78.64NCBI
Nop53
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8185,757,271 - 85,765,089 (-)NCBIGRCr8
mRatBN7.2176,629,084 - 76,636,902 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl176,629,069 - 76,636,902 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx182,004,061 - 82,011,895 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0190,568,120 - 90,575,954 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0183,759,201 - 83,767,035 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0177,836,522 - 77,843,991 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl177,836,196 - 77,844,189 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0179,101,202 - 79,108,671 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4176,281,104 - 76,288,571 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1176,359,212 - 76,366,682 (-)NCBI
Celera171,119,638 - 71,127,111 (-)NCBICelera
Cytogenetic Map1q21NCBI
Nop53
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555741,506,022 - 1,517,130 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555741,505,997 - 1,514,680 (+)NCBIChiLan1.0ChiLan1.0
NOP53
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22053,897,649 - 53,911,514 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11955,768,753 - 55,780,320 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01944,739,739 - 44,751,303 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11953,393,238 - 53,404,708 (+)NCBIpanpan1.1PanPan1.1panPan2
NOP53
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11108,307,039 - 108,315,732 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1108,307,042 - 108,316,495 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1107,789,230 - 107,797,912 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01108,833,077 - 108,841,767 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1108,829,885 - 108,842,457 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11108,501,211 - 108,509,476 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01108,145,336 - 108,154,020 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01109,013,492 - 109,022,181 (-)NCBIUU_Cfam_GSD_1.0
Nop53
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934919,716,350 - 19,725,739 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366641,334,510 - 1,342,321 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366641,334,487 - 1,343,867 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NOP53
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1641,058,199 - 41,070,220 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl641,057,906 - 41,071,202 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607320,811,521 - 20,823,571 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nop53
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248326,145,749 - 6,154,411 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248326,144,260 - 6,154,172 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in NOP53
135 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 10 4 3 5 2 6 2 3 3
Low 17
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000025029   ⟹   ENSSSCP00000028183
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl653,443,480 - 53,452,017 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000091841   ⟹   ENSSSCP00000078114
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl653,443,385 - 53,452,017 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000106912   ⟹   ENSSSCP00000078311
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl653,443,480 - 53,452,017 (+)Ensembl
RefSeq Acc Id: XM_021094646   ⟹   XP_020950305
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1653,443,453 - 53,451,707 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020950305   ⟸   XM_021094646
- UniProtKB: A0A480VI14 (UniProtKB/TrEMBL),   A0A8D0MC18 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000028183   ⟸   ENSSSCT00000025029
RefSeq Acc Id: ENSSSCP00000078114   ⟸   ENSSSCT00000091841
RefSeq Acc Id: ENSSSCP00000078311   ⟸   ENSSSCT00000106912


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000022774 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015002934 UniProtKB/TrEMBL
  ENSSSCG00025015097 UniProtKB/TrEMBL
  ENSSSCG00045013343 UniProtKB/TrEMBL
  ENSSSCG00055025505 UniProtKB/TrEMBL
  ENSSSCG00065059947 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000025029 ENTREZGENE
  ENSSSCT00000025029.4 UniProtKB/TrEMBL
  ENSSSCT00000091841.1 UniProtKB/TrEMBL
  ENSSSCT00000106912.1 UniProtKB/TrEMBL
  ENSSSCT00015003713.1 UniProtKB/TrEMBL
  ENSSSCT00025020231.1 UniProtKB/TrEMBL
  ENSSSCT00045022780.1 UniProtKB/TrEMBL
  ENSSSCT00055050474.1 UniProtKB/TrEMBL
  ENSSSCT00065082102.1 UniProtKB/TrEMBL
InterPro Nop53/GLTSCR2 UniProtKB/TrEMBL
NCBI Gene NOP53 ENTREZGENE
PANTHER PTHR14211 UniProtKB/TrEMBL
  RIBOSOME BIOGENESIS PROTEIN NOP53 UniProtKB/TrEMBL
Pfam Nop53 UniProtKB/TrEMBL
PIRSF Gltscr2 UniProtKB/TrEMBL
UniProt A0A480VI14 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0MC18 ENTREZGENE, UniProtKB/TrEMBL
  A0A8W4FFA9_PIG UniProtKB/TrEMBL
  A0A8W4FHG1_PIG UniProtKB/TrEMBL
  I3LVN1_PIG UniProtKB/TrEMBL
VGNC ID VGNC:90821 ENTREZGENE