LAMC1 (laminin subunit gamma 1) - Rat Genome Database

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Gene: LAMC1 (laminin subunit gamma 1) Sus scrofa
Analyze
Symbol: LAMC1
Name: laminin subunit gamma 1
RGD ID: 14262876
Description: ENCODES a protein that exhibits glycosphingolipid binding (ortholog); INVOLVED IN chromatin organization (ortholog); gene expression (ortholog); hair cell differentiation (ortholog); ASSOCIATED WITH 1q24 Deletion Syndrome (ortholog); aortic disease (ortholog); autosomal recessive chronic granulomatous disease 2 (ortholog); FOUND IN collagen-containing extracellular matrix (ortholog); laminin-1 complex (ortholog); laminin-10 complex (ortholog)
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LAMB2; laminin S; laminin subunit gamma-1; laminin, beta 2; laminin, gamma 1 (formerly LAMB2)
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9124,283,224 - 124,405,964 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19124,283,668 - 124,405,967 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29136,545,710 - 136,668,768 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:16917482   PMID:30032202  


Genomics

Comparative Map Data
LAMC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9124,283,224 - 124,405,964 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19124,283,668 - 124,405,967 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29136,545,710 - 136,668,768 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LAMC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381183,023,420 - 183,145,592 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1183,023,420 - 183,145,592 (+)EnsemblGRCh38hg38GRCh38
GRCh371182,992,555 - 183,114,727 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361181,259,218 - 181,381,350 (+)NCBINCBI36Build 36hg18NCBI36
Build 341179,724,209 - 179,846,384NCBI
Celera1156,103,698 - 156,225,839 (+)NCBICelera
Cytogenetic Map1q25.3NCBI
HuRef1154,228,644 - 154,350,771 (+)NCBIHuRef
CHM1_11184,415,719 - 184,537,861 (+)NCBICHM1_1
T2T-CHM13v2.01182,382,573 - 182,504,736 (+)NCBIT2T-CHM13v2.0
Lamc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391153,094,668 - 153,208,532 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1153,094,668 - 153,208,532 (-)EnsemblGRCm39 Ensembl
GRCm381153,218,922 - 153,332,786 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1153,218,922 - 153,332,786 (-)EnsemblGRCm38mm10GRCm38
MGSCv371155,066,052 - 155,179,916 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361154,981,140 - 155,095,004 (-)NCBIMGSCv36mm8
Celera1155,640,123 - 155,755,639 (-)NCBICelera
Cytogenetic Map1G3NCBI
cM Map165.3NCBI
Lamc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81367,924,872 - 68,051,986 (-)NCBIGRCr8
mRatBN7.21365,374,372 - 65,501,492 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1365,374,372 - 65,501,492 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1367,978,376 - 68,104,929 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01369,265,739 - 69,392,805 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01366,517,058 - 66,644,103 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01370,656,727 - 70,783,515 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1370,658,707 - 70,783,515 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01375,617,972 - 75,749,359 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41368,241,453 - 68,369,419 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11368,256,660 - 68,268,487 (-)NCBI
Celera1365,279,355 - 65,406,336 (-)NCBICelera
Cytogenetic Map13q21NCBI
Lamc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540621,863,836 - 21,992,199 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540621,863,836 - 21,990,161 (+)NCBIChiLan1.0ChiLan1.0
LAMC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2166,584,163 - 66,706,520 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1166,267,661 - 66,390,046 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01158,541,635 - 158,663,836 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11162,700,704 - 162,822,534 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1162,700,704 - 162,822,534 (+)Ensemblpanpan1.1panPan2
LAMC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1716,406,421 - 16,528,372 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl716,404,495 - 16,526,000 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha715,992,748 - 16,114,168 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0716,136,951 - 16,259,344 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl716,136,951 - 16,257,388 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1716,047,760 - 16,168,747 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0716,156,304 - 16,277,740 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0716,286,773 - 16,408,562 (+)NCBIUU_Cfam_GSD_1.0
Lamc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934488,826,740 - 88,936,435 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364816,673,488 - 6,783,191 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364816,675,620 - 6,783,184 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LAMC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12546,233,409 - 46,354,060 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2546,231,780 - 46,353,557 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605547,451,170 - 47,571,755 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lamc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462481410,570,356 - 10,701,977 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462481410,572,026 - 10,701,805 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in LAMC1
5281 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 8 4 3 4 2 16 2 3
Low 2 1 7 1
Below cutoff 2

Sequence


RefSeq Acc Id: ENSSSCT00000016945   ⟹   ENSSSCP00000016491
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl9124,283,224 - 124,405,964 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000046346   ⟹   ENSSSCP00000037158
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl9124,283,224 - 124,405,964 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000087801   ⟹   ENSSSCP00000073146
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl9124,358,861 - 124,404,782 (+)Ensembl
RefSeq Acc Id: NM_001271715   ⟹   NP_001258644
RefSeq Status: VALIDATED
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.19124,283,668 - 124,405,967 (+)NCBI
Sequence:
RefSeq Acc Id: NP_001258644   ⟸   NM_001271715
- Peptide Label: precursor
- UniProtKB: A0A8D0REQ7 (UniProtKB/TrEMBL),   A0A287A078 (UniProtKB/TrEMBL),   A0A8D0Z1J8 (UniProtKB/TrEMBL),   F1S663 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000016491   ⟸   ENSSSCT00000016945
RefSeq Acc Id: ENSSSCP00000037158   ⟸   ENSSSCT00000046346
RefSeq Acc Id: ENSSSCP00000073146   ⟸   ENSSSCT00000087801

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000015555 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015017944 UniProtKB/TrEMBL
  ENSSSCG00025026521 UniProtKB/TrEMBL
  ENSSSCG00030020337 UniProtKB/TrEMBL
  ENSSSCG00035020002 UniProtKB/TrEMBL
  ENSSSCG00040021742 UniProtKB/TrEMBL
  ENSSSCG00045039303 UniProtKB/TrEMBL
  ENSSSCG00050050453 UniProtKB/TrEMBL
  ENSSSCG00055000932 UniProtKB/TrEMBL
  ENSSSCG00060010427 UniProtKB/TrEMBL
  ENSSSCG00065003543 UniProtKB/TrEMBL
  ENSSSCG00070012714 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000016945.5 UniProtKB/TrEMBL
  ENSSSCT00000046346 ENTREZGENE
  ENSSSCT00000046346.3 UniProtKB/TrEMBL
  ENSSSCT00000087801.2 UniProtKB/TrEMBL
  ENSSSCT00015024125.1 UniProtKB/TrEMBL
  ENSSSCT00015024243.1 UniProtKB/TrEMBL
  ENSSSCT00015024321.1 UniProtKB/TrEMBL
  ENSSSCT00025036130.1 UniProtKB/TrEMBL
  ENSSSCT00025036409.1 UniProtKB/TrEMBL
  ENSSSCT00025036721.1 UniProtKB/TrEMBL
  ENSSSCT00025036772.1 UniProtKB/TrEMBL
  ENSSSCT00030028215.1 UniProtKB/TrEMBL
  ENSSSCT00030028231.1 UniProtKB/TrEMBL
  ENSSSCT00030028239.1 UniProtKB/TrEMBL
  ENSSSCT00030028247.1 UniProtKB/TrEMBL
  ENSSSCT00035025994.1 UniProtKB/TrEMBL
  ENSSSCT00035026013.1 UniProtKB/TrEMBL
  ENSSSCT00040029279.1 UniProtKB/TrEMBL
  ENSSSCT00045068451.1 UniProtKB/TrEMBL
  ENSSSCT00045068456.1 UniProtKB/TrEMBL
  ENSSSCT00045068460.1 UniProtKB/TrEMBL
  ENSSSCT00050068695.1 UniProtKB/TrEMBL
  ENSSSCT00050068708.1 UniProtKB/TrEMBL
  ENSSSCT00050068715.1 UniProtKB/TrEMBL
  ENSSSCT00055001773.1 UniProtKB/TrEMBL
  ENSSSCT00055001787.1 UniProtKB/TrEMBL
  ENSSSCT00055001795.1 UniProtKB/TrEMBL
  ENSSSCT00060013572.1 UniProtKB/TrEMBL
  ENSSSCT00060013598.1 UniProtKB/TrEMBL
  ENSSSCT00060013610.1 UniProtKB/TrEMBL
  ENSSSCT00060013617.1 UniProtKB/TrEMBL
  ENSSSCT00065004901.1 UniProtKB/TrEMBL
  ENSSSCT00070024869.1 UniProtKB/TrEMBL
Gene3D-CATH Galactose-binding domain-like UniProtKB/TrEMBL
  Laminin UniProtKB/TrEMBL
InterPro EGF-like_dom UniProtKB/TrEMBL
  Laminin_EGF UniProtKB/TrEMBL
  Laminin_IV UniProtKB/TrEMBL
  Laminin_N UniProtKB/TrEMBL
KEGG Report ssc:100514785 UniProtKB/TrEMBL
NCBI Gene LAMC1 ENTREZGENE
PANTHER LAMININ SUBUNIT GAMMA-1 UniProtKB/TrEMBL
  NETRIN/LAMININ-RELATED UniProtKB/TrEMBL
Pfam Laminin_B UniProtKB/TrEMBL
  Laminin_EGF UniProtKB/TrEMBL
  Laminin_N UniProtKB/TrEMBL
PRINTS EGFLAMININ UniProtKB/TrEMBL
PROSITE EGF_1 UniProtKB/TrEMBL
  EGF_LAM_1 UniProtKB/TrEMBL
  EGF_LAM_2 UniProtKB/TrEMBL
  LAMININ_IVA UniProtKB/TrEMBL
  LAMININ_NTER UniProtKB/TrEMBL
  PROKAR_LIPOPROTEIN UniProtKB/TrEMBL
SMART EGF UniProtKB/TrEMBL
  EGF_Lam UniProtKB/TrEMBL
  LamB UniProtKB/TrEMBL
  LamNT UniProtKB/TrEMBL
Superfamily-SCOP EGF/Laminin UniProtKB/TrEMBL
UniProt A0A287A078 ENTREZGENE
  A0A4X1TYI6_PIG UniProtKB/TrEMBL
  A0A5G2REQ7_PIG UniProtKB/TrEMBL
  A0A8D0MV47_PIG UniProtKB/TrEMBL
  A0A8D0MXM1_PIG UniProtKB/TrEMBL
  A0A8D0REQ7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0RFC7_PIG UniProtKB/TrEMBL
  A0A8D0RFQ0_PIG UniProtKB/TrEMBL
  A0A8D0VWT7_PIG UniProtKB/TrEMBL
  A0A8D0VWU6_PIG UniProtKB/TrEMBL
  A0A8D0VZE1_PIG UniProtKB/TrEMBL
  A0A8D0Z1J8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1JE50_PIG UniProtKB/TrEMBL
  A0A8D1JKR9_PIG UniProtKB/TrEMBL
  A0A8D1MY36_PIG UniProtKB/TrEMBL
  A0A8D1MY51_PIG UniProtKB/TrEMBL
  A0A8D1PC44_PIG UniProtKB/TrEMBL
  A0A8D1SNS4_PIG UniProtKB/TrEMBL
  A0A8D1SNT7_PIG UniProtKB/TrEMBL
  A0A8D1SUS8_PIG UniProtKB/TrEMBL
  F1S663 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A287A078 UniProtKB/TrEMBL
VGNC ID VGNC:89624 ENTREZGENE