PIM1 (Pim-1 proto-oncogene, serine/threonine kinase) - Rat Genome Database

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Gene: PIM1 (Pim-1 proto-oncogene, serine/threonine kinase) Sus scrofa
Analyze
Symbol: PIM1
Name: Pim-1 proto-oncogene, serine/threonine kinase
RGD ID: 14262331
Description: ENCODES a protein that exhibits protein serine/threonine kinase activator activity (ortholog); INVOLVED IN cellular detoxification (inferred); cellular response to type II interferon (inferred); negative regulation of apoptotic process (inferred); PARTICIPATES IN granulocyte-macrophage colony-stimulating factor signaling pathway; interleukin-3 signaling pathway; interleukin-5 signaling pathway; ASSOCIATED WITH allergic contact dermatitis (ortholog); Animal Disease Models (ortholog); Breast Neoplasms (ortholog); FOUND IN plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: pim-1 oncogene; protein kinase 1 related oncogen protein; serine/threonine-protein kinase pim-1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl732,788,291 - 32,793,878 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1732,788,246 - 32,793,882 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2737,691,993 - 37,697,470 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:27908351   PMID:30032202  


Genomics

Comparative Map Data
PIM1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl732,788,291 - 32,793,878 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1732,788,246 - 32,793,882 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2737,691,993 - 37,697,470 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PIM1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38637,170,152 - 37,175,428 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl637,170,152 - 37,175,428 (+)EnsemblGRCh38hg38GRCh38
GRCh37637,137,928 - 37,143,204 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36637,245,964 - 37,251,182 (+)NCBINCBI36Build 36hg18NCBI36
Build 34637,245,963 - 37,251,180NCBI
Celera638,693,003 - 38,698,282 (+)NCBICelera
Cytogenetic Map6p21.2NCBI
HuRef636,856,808 - 36,862,087 (+)NCBIHuRef
CHM1_1637,139,777 - 37,145,056 (+)NCBICHM1_1
T2T-CHM13v2.0636,993,698 - 36,998,970 (+)NCBIT2T-CHM13v2.0
Pim1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391729,709,759 - 29,715,085 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1729,709,727 - 29,715,086 (+)EnsemblGRCm39 Ensembl
GRCm381729,490,785 - 29,496,111 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1729,490,753 - 29,496,112 (+)EnsemblGRCm38mm10GRCm38
MGSCv371729,627,990 - 29,632,410 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361729,217,824 - 29,222,468 (+)NCBIMGSCv36mm8
Celera1730,034,650 - 30,039,059 (+)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1715.38NCBI
Pim1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8207,556,496 - 7,560,747 (+)NCBIGRCr8
mRatBN7.2207,554,921 - 7,559,174 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl207,554,921 - 7,559,174 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx208,258,177 - 8,262,426 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0207,619,707 - 7,623,956 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0208,092,540 - 8,096,790 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0208,165,423 - 8,169,557 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl208,165,307 - 8,169,555 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02010,364,285 - 10,368,419 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4207,817,403 - 7,821,800 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1207,817,629 - 7,822,027 (+)NCBI
Celera209,096,543 - 9,100,794 (+)NCBICelera
Cytogenetic Map20p12NCBI
Pim1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554375,942,106 - 5,945,431 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554375,940,825 - 5,945,367 (-)NCBIChiLan1.0ChiLan1.0
PIM1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2551,637,481 - 51,642,881 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1647,507,387 - 47,512,785 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0636,730,669 - 36,735,954 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1637,923,556 - 37,928,841 (+)NCBIpanpan1.1PanPan1.1panPan2
PIM1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1126,213,504 - 6,217,933 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl126,211,867 - 6,217,933 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha126,231,727 - 6,236,155 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0126,677,872 - 6,682,310 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl126,562,116 - 6,682,883 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1126,215,069 - 6,219,497 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0126,296,443 - 6,300,872 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0126,395,246 - 6,399,674 (+)NCBIUU_Cfam_GSD_1.0
Pim1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494641,660,075 - 41,664,724 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647622,295,021 - 22,300,161 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647622,295,023 - 22,300,155 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PIM1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11734,968,661 - 34,973,920 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1734,968,429 - 34,973,760 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604437,109,813 - 37,115,081 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pim1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475420,808,701 - 20,815,206 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475420,810,398 - 20,815,182 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in PIM1
136 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 8 2 5 1 3
Low 2 2 3 2 22 2 2
Below cutoff 1

Sequence


RefSeq Acc Id: ENSSSCT00000001752   ⟹   ENSSSCP00000001708
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl732,788,291 - 32,793,878 (+)Ensembl
RefSeq Acc Id: XM_005665927   ⟹   XP_005665984
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1732,788,246 - 32,793,882 (+)NCBI
Sequence:
RefSeq Acc Id: XP_005665984   ⟸   XM_005665927
- UniProtKB: A0A8D1NTU1 (UniProtKB/TrEMBL),   A0A0B8RZA1 (UniProtKB/TrEMBL),   F1RVS6 (UniProtKB/TrEMBL),   A0A8D1YJG5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000001708   ⟸   ENSSSCT00000001752
Protein Domains
Protein kinase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000001573 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005044206 UniProtKB/TrEMBL
  ENSSSCG00015050298 UniProtKB/TrEMBL
  ENSSSCG00025008207 UniProtKB/TrEMBL
  ENSSSCG00030066702 UniProtKB/TrEMBL
  ENSSSCG00035004102 UniProtKB/TrEMBL
  ENSSSCG00040014256 UniProtKB/TrEMBL
  ENSSSCG00045025763 UniProtKB/TrEMBL
  ENSSSCG00050072629 UniProtKB/TrEMBL
  ENSSSCG00055009875 UniProtKB/TrEMBL
  ENSSSCG00060031295 UniProtKB/TrEMBL
  ENSSSCG00065035800 UniProtKB/TrEMBL
  ENSSSCG00070003474 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000001752 ENTREZGENE
  ENSSSCT00000001752.5 UniProtKB/TrEMBL
  ENSSSCT00005071099.1 UniProtKB/TrEMBL
  ENSSSCT00015067034.1 UniProtKB/TrEMBL
  ENSSSCT00025010939.1 UniProtKB/TrEMBL
  ENSSSCT00030093213.1 UniProtKB/TrEMBL
  ENSSSCT00035005108.1 UniProtKB/TrEMBL
  ENSSSCT00040019048.1 UniProtKB/TrEMBL
  ENSSSCT00045043891.1 UniProtKB/TrEMBL
  ENSSSCT00050099168.1 UniProtKB/TrEMBL
  ENSSSCT00055019309.1 UniProtKB/TrEMBL
  ENSSSCT00060042342.1 UniProtKB/TrEMBL
  ENSSSCT00065048784.1 UniProtKB/TrEMBL
  ENSSSCT00070006524.1 UniProtKB/TrEMBL
  ENSSSCT00070006530.1 UniProtKB/TrEMBL
Gene3D-CATH Transferase(Phosphotransferase) domain 1 UniProtKB/TrEMBL
InterPro Kinase-like_dom_sf UniProtKB/TrEMBL
  PIM1/2/3 UniProtKB/TrEMBL
  Prot_kinase_dom UniProtKB/TrEMBL
  Protein_kinase_ATP_BS UniProtKB/TrEMBL
  Ser/Thr_kinase_AS UniProtKB/TrEMBL
KEGG Report ssc:100157844 UniProtKB/TrEMBL
NCBI Gene PIM1 ENTREZGENE
PANTHER SERINE/THREONINE-PROTEIN KINASE PIM UniProtKB/TrEMBL
  SERINE/THREONINE-PROTEIN KINASE PIM-1 UniProtKB/TrEMBL
Pfam Pkinase UniProtKB/TrEMBL
PIRSF STPK_Pim-1 UniProtKB/TrEMBL
PROSITE PROTEIN_KINASE_ATP UniProtKB/TrEMBL
  PROTEIN_KINASE_DOM UniProtKB/TrEMBL
  PROTEIN_KINASE_ST UniProtKB/TrEMBL
SMART S_TKc UniProtKB/TrEMBL
Superfamily-SCOP SSF56112 UniProtKB/TrEMBL
UniProt A0A0B8RZA1 ENTREZGENE
  A0A4X1SRD6_PIG UniProtKB/TrEMBL
  A0A4X1SRD7_PIG UniProtKB/TrEMBL
  A0A8D1NTU1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1YJG5 ENTREZGENE, UniProtKB/TrEMBL
  F1RVS6 ENTREZGENE
  Q700R0_PIG UniProtKB/TrEMBL
UniProt Secondary F1RVS6 UniProtKB/TrEMBL