TMEM202 (transmembrane protein 202) - Rat Genome Database

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Gene: TMEM202 (transmembrane protein 202) Sus scrofa
Analyze
Symbol: TMEM202
Name: transmembrane protein 202
RGD ID: 14261524
Description: ASSOCIATED WITH Bloom syndrome (ortholog); Brugada syndrome 8 (ortholog); colorectal cancer (ortholog); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl760,854,316 - 60,885,284 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1760,853,877 - 60,865,688 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2765,396,342 - 65,420,586 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
TMEM202
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl760,854,316 - 60,885,284 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1760,853,877 - 60,865,688 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2765,396,342 - 65,420,586 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TMEM202
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381572,398,305 - 72,408,367 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1572,398,302 - 72,408,367 (+)EnsemblGRCh38hg38GRCh38
GRCh371572,690,646 - 72,700,708 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361570,477,722 - 70,487,762 (+)NCBINCBI36Build 36hg18NCBI36
Celera1549,576,835 - 49,586,875 (+)NCBICelera
Cytogenetic Map15q23-q24.1NCBI
HuRef1549,521,097 - 49,531,137 (+)NCBIHuRef
CHM1_11572,808,672 - 72,818,712 (+)NCBICHM1_1
T2T-CHM13v2.01570,215,636 - 70,225,698 (+)NCBIT2T-CHM13v2.0
Tmem202
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39959,425,954 - 59,447,134 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl959,425,968 - 59,447,130 (-)EnsemblGRCm39 Ensembl
GRCm38959,518,671 - 59,539,674 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl959,518,685 - 59,539,847 (-)EnsemblGRCm38mm10GRCm38
MGSCv37959,366,492 - 59,373,308 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36959,316,691 - 59,323,507 (-)NCBIMGSCv36mm8
Celera956,745,943 - 56,752,719 (-)NCBICelera
Cytogenetic Map9BNCBI
cM Map932.02NCBI
Tmem202
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8868,806,629 - 68,832,638 (-)NCBIGRCr8
mRatBN7.2859,910,824 - 59,919,342 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl859,910,824 - 59,916,609 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx865,434,930 - 65,440,712 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0863,707,944 - 63,713,729 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0861,577,295 - 61,583,077 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0864,299,646 - 64,305,330 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl864,299,646 - 64,305,330 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0864,061,458 - 64,067,142 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4863,337,204 - 63,343,114 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera859,352,512 - 59,358,203 (-)NCBICelera
Cytogenetic Map8q24NCBI
TMEM202
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21661,660,991 - 61,670,721 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11565,825,255 - 65,834,984 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01551,347,032 - 51,357,008 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11570,111,035 - 70,120,734 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1570,111,035 - 70,120,598 (+)Ensemblpanpan1.1panPan2
TMEM202
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13035,877,231 - 35,887,063 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3035,813,896 - 35,823,746 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03036,082,637 - 36,092,483 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.13036,034,935 - 36,044,779 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03036,062,610 - 36,072,457 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03036,318,415 - 36,344,697 (+)NCBIUU_Cfam_GSD_1.0
LOC101974698
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640113,908,316 - 113,914,212 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493647131,756,435 - 31,762,242 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMEM202
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12611,054,782 - 11,082,138 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2611,054,924 - 11,064,686 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048130,495,544 - 130,525,443 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in TMEM202
181 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system nervous system reproductive system respiratory system
High
Medium
Low 5 2 1 3 8 2 2
Below cutoff 4 2 2 11 1 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000002155   ⟹   ENSSSCP00000002104
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl760,853,871 - 60,884,441 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000073371   ⟹   ENSSSCP00000069556
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl760,854,316 - 60,865,751 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000095261   ⟹   ENSSSCP00000077983
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl760,854,316 - 60,885,284 (-)Ensembl
RefSeq Acc Id: XM_005666174   ⟹   XP_005666231
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1760,853,877 - 60,865,688 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002345846
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1760,854,317 - 60,855,918 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_005666231   ⟸   XM_005666174
- UniProtKB: A0A4X1TFV6 (UniProtKB/TrEMBL),   A0A5G2QXF4 (UniProtKB/TrEMBL),   A0A8D0VJF2 (UniProtKB/TrEMBL),   A0A8D1WHP6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000002104   ⟸   ENSSSCT00000002155
RefSeq Acc Id: ENSSSCP00000069556   ⟸   ENSSSCT00000073371
RefSeq Acc Id: ENSSSCP00000077983   ⟸   ENSSSCT00000095261


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000001926 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005043639 UniProtKB/TrEMBL
  ENSSSCG00015003361 UniProtKB/TrEMBL
  ENSSSCG00025046763 UniProtKB/TrEMBL
  ENSSSCG00030011604 UniProtKB/TrEMBL
  ENSSSCG00035011148 UniProtKB/TrEMBL
  ENSSSCG00040050760 UniProtKB/TrEMBL
  ENSSSCG00045007867 UniProtKB/TrEMBL
  ENSSSCG00050017056 UniProtKB/TrEMBL
  ENSSSCG00055018666 UniProtKB/TrEMBL
  ENSSSCG00060067475 UniProtKB/TrEMBL
  ENSSSCG00065051472 UniProtKB/TrEMBL
  ENSSSCG00070009109 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000073371 ENTREZGENE
  ENSSSCT00000073371.2 UniProtKB/TrEMBL
  ENSSSCT00000095261.1 UniProtKB/TrEMBL
  ENSSSCT00005070123.1 UniProtKB/TrEMBL
  ENSSSCT00015004304.1 UniProtKB/TrEMBL
  ENSSSCT00025063552.1 UniProtKB/TrEMBL
  ENSSSCT00030015914.1 UniProtKB/TrEMBL
  ENSSSCT00035013983.1 UniProtKB/TrEMBL
  ENSSSCT00040068511.1 UniProtKB/TrEMBL
  ENSSSCT00045013205.1 UniProtKB/TrEMBL
  ENSSSCT00050023243.1 UniProtKB/TrEMBL
  ENSSSCT00055036519.1 UniProtKB/TrEMBL
  ENSSSCT00060092057.1 UniProtKB/TrEMBL
  ENSSSCT00065070492.1 UniProtKB/TrEMBL
  ENSSSCT00070017665.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.140.150 UniProtKB/TrEMBL
NCBI Gene TMEM202 ENTREZGENE
PANTHER EPITHELIAL MEMBRANE PROTEIN-RELATED UniProtKB/TrEMBL
  TRANSMEMBRANE PROTEIN 202 UniProtKB/TrEMBL
UniProt A0A4X1TFV6 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2QXF4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0VJF2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1WHP6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8W4FI41_PIG UniProtKB/TrEMBL