IFN-ALPHA-13 (interferon-alpha-13) - Rat Genome Database

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Gene: IFN-ALPHA-13 (interferon-alpha-13) Sus scrofa
Analyze
No known orthologs.
Symbol: IFN-ALPHA-13
Name: interferon-alpha-13
RGD ID: 14257780
Description: ENCODES a protein that exhibits cytokine activity (inferred); cytokine receptor binding (inferred); INVOLVED IN defense response (inferred); defense response to virus (inferred); signal transduction (inferred); FOUND IN extracellular region (inferred); extracellular space (inferred)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: uncharacterized protein LOC100152100
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1201,770,946 - 201,771,625 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11201,770,996 - 201,771,565 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21225,215,348 - 225,215,917 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:20406849   PMID:22301074   PMID:30032202  


Genomics

Variants

.
Variants in IFN-ALPHA-13
5 total Variants

Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000005676   ⟹   ENSSSCP00000076492
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1201,770,946 - 201,771,625 (+)Ensembl
RefSeq Acc Id: NM_001164843   ⟹   NP_001158315
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11201,770,996 - 201,771,565 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001158315 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein ACV42402 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000076492
  ENSSSCP00000076492.1
  ENSSSCP00005002038.1
  ENSSSCP00005021015.1
  ENSSSCP00025032943.1
  ENSSSCP00040042596.1
  ENSSSCP00050038306.1
  ENSSSCP00055010649.1
Reference Protein Sequences
RefSeq Acc Id: NP_001158315   ⟸   NM_001164843
- Peptide Label: precursor
- UniProtKB: C8CKA4 (UniProtKB/TrEMBL),   A0A8D1PXM7 (UniProtKB/TrEMBL),   A0A8D0SLY5 (UniProtKB/TrEMBL),   A0A8D1NCX4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000076492   ⟸   ENSSSCT00000005676


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000055846 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005002329 UniProtKB/TrEMBL
  ENSSSCG00005021889 UniProtKB/TrEMBL
  ENSSSCG00025055355 UniProtKB/TrEMBL
  ENSSSCG00040069698 UniProtKB/TrEMBL
  ENSSSCG00050065489 UniProtKB/TrEMBL
  ENSSSCG00055006977 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000005676 ENTREZGENE
  ENSSSCT00000005676.4 UniProtKB/TrEMBL
  ENSSSCT00005003496.1 UniProtKB/TrEMBL
  ENSSSCT00005034537.1 UniProtKB/TrEMBL
  ENSSSCT00025075998.1 UniProtKB/TrEMBL
  ENSSSCT00040096008.1 UniProtKB/TrEMBL
  ENSSSCT00050089221.1 UniProtKB/TrEMBL
  ENSSSCT00055013531.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1250.10 UniProtKB/TrEMBL
InterPro 4_helix_cytokine-like_core UniProtKB/TrEMBL
  Interferon_alpha/beta/delta UniProtKB/TrEMBL
KEGG Report ssc:100152100 UniProtKB/TrEMBL
NCBI Gene IFN-ALPHA-13 ENTREZGENE
PANTHER INTERFERON ALPHA-5 UniProtKB/TrEMBL
  PTHR11691 UniProtKB/TrEMBL
Pfam Interferon UniProtKB/TrEMBL
PRINTS INTERFERONAB UniProtKB/TrEMBL
PROSITE INTERFERON_A_B_D UniProtKB/TrEMBL
SMART IFabd UniProtKB/TrEMBL
Superfamily-SCOP SSF47266 UniProtKB/TrEMBL
UniProt A0A8D0I0R3_PIG UniProtKB/TrEMBL
  A0A8D0J004_PIG UniProtKB/TrEMBL
  A0A8D0SLY5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1NCX4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1PXM7 ENTREZGENE, UniProtKB/TrEMBL
  C8CKA4 ENTREZGENE, UniProtKB/TrEMBL