LOC100520074 (olfactory receptor 10J3-like)

Gene: LOC100520074 (olfactory receptor 10J3-like) Sus scrofa

Analyze

Symbol:

LOC100520074 (Ensembl: OR10J3)

Name:

olfactory receptor 10J3-like (Ensembl:olfactory receptor family 10 subfamily J member 3)

RGD ID:

14254549

Description:

ENCODES a protein that exhibits G protein-coupled receptor activity (inferred); olfactory receptor activity (inferred); INVOLVED IN detection of chemical stimulus involved in sensory perception of smell (inferred); G protein-coupled receptor signaling pathway (inferred); sensory perception of smell (inferred); ASSOCIATED WITH autoimmune interstitial lung, joint, and kidney disease (ortholog); gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog); FOUND IN membrane (inferred); plasma membrane (inferred)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	91,111,347 - 91,112,291 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	91,111,409 - 91,112,410 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	99,082,237 - 99,083,756 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autoimmune interstitial lung, joint, and kidney disease (ISO)

gastrointestinal stromal tumor (ISO)

parathyroid carcinoma (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

detection of chemical stimulus involved in sensory perception of smell (IEA)

G protein-coupled receptor signaling pathway (IEA)

sensory perception of smell (IEA)

Cellular Component

membrane (IEA)

plasma membrane (IEA)

Molecular Function

G protein-coupled receptor activity (IEA)

olfactory receptor activity (IEA)

References

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

LOC100520074
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	91,111,347 - 91,112,291 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	91,111,409 - 91,112,410 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	99,082,237 - 99,083,756 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

OR10J3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	159,313,570 - 159,314,759 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	159,313,720 - 159,314,659 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	159,283,360 - 159,284,549 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	157,550,084 - 157,551,073 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	156,096,532 - 156,097,522	NCBI
Celera	1	132,353,699 - 132,354,688 (-)	NCBI		Celera
Cytogenetic Map	1	q23.2	NCBI
HuRef	1	130,640,468 - 130,641,457 (-)	NCBI		HuRef
CHM1_1	1	160,678,889 - 160,679,878 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	158,450,601 - 158,451,790 (-)	NCBI		T2T-CHM13v2.0

Or10j3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	173,030,925 - 173,031,866 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	173,025,375 - 173,033,903 (+)	Ensembl		GRCm39 Ensembl
GRCm38	1	173,203,358 - 173,204,299 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	173,197,808 - 173,206,336 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	175,133,489 - 175,134,430 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	175,040,033 - 175,040,974 (+)	NCBI		MGSCv36	mm8
MGSCv36	1	174,503,959 - 174,504,900 (+)	NCBI		MGSCv36	mm8
Celera	1	176,054,239 - 176,055,107 (+)	NCBI		Celera
Cytogenetic Map	1	H3	NCBI
cM Map	1	80.33	NCBI

Or10j3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	88,199,580 - 88,200,521 (+)	NCBI		GRCr8
mRatBN7.2	13	85,667,254 - 85,668,195 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	85,662,666 - 85,669,540 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	13	88,165,178 - 88,166,119 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	89,565,486 - 89,566,427 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	86,750,163 - 86,751,104 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	91,711,995 - 91,712,936 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	91,711,995 - 91,712,936 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	13	96,226,413 - 96,227,354 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	13	89,411,134 - 89,412,075 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	13	89,600,017 - 89,600,959 (+)	NCBI
Celera	13	85,270,915 - 85,271,856 (+)	NCBI		Celera
Cytogenetic Map	13	q24	NCBI

LOC112436706
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	90,538,935 - 90,541,284 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	90,276,162 - 90,278,512 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	134,666,022 - 134,667,393 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	138,463,681 - 138,464,670 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	138,463,455 - 138,464,676 (-)	Ensembl	panpan1.1		panPan2

OR10J5
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	38	22,531,375 - 22,679,635 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	38	22,531,375 - 22,678,591 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	38	22,608,002 - 22,609,479 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	38	22,654,268 - 22,802,282 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	38	22,420,210 - 22,567,013 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	38	22,952,558 - 23,101,286 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	38	23,364,389 - 23,552,696 (+)	NCBI		UU_Cfam_GSD_1.0

LOC101971086
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	5,555,899 - 5,563,989 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936740	1,196,967 - 1,197,908 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936740	1,196,967 - 1,197,926 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LOC103223760
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	4,627,938 - 4,629,669 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666038	3,767,901 - 3,769,342 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Variants

Variants in LOC100520074
18 total Variants

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_021089599	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000022	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSSCT00000092172 ⟹ ENSSSCP00000077254

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	4	91,111,347 - 91,112,291 (+)	Ensembl

RefSeq Acc Id:

XM_021089599 ⟹ XP_020945258

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	4	91,111,409 - 91,112,410 (+)	NCBI

Sequence:

show sequence

GTGGCAGCACAGGCTTGGCTTCTTCGTTGTCTTTCTAACTCTATACCTGCTGACTCTCGCTAGC
AATGTCATTATTGTGACGGTTATTCGCCTGGACCATCACCTCCATACTCCCATGTACTTTTTCG
TGGGCATGCTTTCCACCTCTGAGACCTGTTACACTGTGACCATAATTCCTCGCATGCTTTCTGA
CCTCCTGAGTCCTCACCAGCCCATTTCTATCCAGGGCTGTGCCACTCAGCTCTTCTTCTACCTC
ACCTTTGGTATCAGTAACTGCTTCCTGCTCACAGCCATGGGATATGATCGCTACGTGGCCATCT
GCAACCCCCTGCGGTATTCAGTCATCATGGGTAAAGAGGCCTGTGTCCAGCTGGCATCTGGGTC
CCTGGGAATTGGCCTGTGTATGGCCATTGTCCAGGTAACATCCGTGTTTGGCCTGCCCTTCTGT
GATGCTTTTGTCCTCTCTCACTTCTTCTGTGACGTGAGACCCCTGCTGAAGCTGGCCTGCACAG
ACACCACTGTCAATGAGATCGTCAACTTTGTGGTCAGTGTTTGTGTCCTTGTTCTACCCATGGG
CCTGGTCTTCATCTCCTATGTCCTCATCATCTCCACCATCCTTAAGATTGCTTCAGCCGAGGGT
CGGAAGAAGGCCTTTGCCACCTGTGCCTCCCACCTCACAGTGGTCGTCATCCACTATGGCTGTG
CCTCCATCATTTACTTGAAGCCTAAGTCCCAGAGTTCCCTGGGGCAGGAGCGACTCATCTCGGT
GACCTACACCGTCATTACTCCTCTGCTGAACCCCGTCGTGTACAGCCTGAGGAACAAGGAGGTC
AAAGATGCGCTGTGCAGAGCCCTGGGGCAAAGGCCCCTCTCCCCTCAATGAGGAGAGGTTGTCG
ACGGCCTTTTCTTTCATTTCATAAATATCTTAATTTTAATGCTGTTTCAGTTAGGCCTGTAAGT
ACAAGATGGAAAAGAACAGGCTACATTGAACTGGGCGTTAAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_020945258	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000077254
	ENSSSCP00000077254.1
	ENSSSCP00045004217.1
	ENSSSCP00055027745.1
	ENSSSCP00070045896.1

RefSeq Acc Id:

XP_020945258 ⟸ XM_021089599

- UniProtKB:

A0A4X1VVI9 (UniProtKB/TrEMBL), A0A8W4FCY0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MYFFVGMLSTSETCYTVTIIPRMLSDLLSPHQPISIQGCATQLFFYLTFGISNCFLLTAMGYDR
YVAICNPLRYSVIMGKEACVQLASGSLGIGLCMAIVQVTSVFGLPFCDAFVLSHFFCDVRPLLK
LACTDTTVNEIVNFVVSVCVLVLPMGLVFISYVLIISTILKIASAEGRKKAFATCASHLTVVVI
HYGCASIIYLKPKSQSSLGQERLISVTYTVITPLLNPVVYSLRNKEVKDALCRALGQRPLSPQ

hide sequence

RefSeq Acc Id:

ENSSSCP00000077254 ⟸ ENSSSCT00000092172

Protein Domains

G-protein coupled receptors family 1 profile

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000056406	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00045003758	UniProtKB/TrEMBL
	ENSSSCG00055017832	UniProtKB/TrEMBL
	ENSSSCG00070027001	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000092172	ENTREZGENE
	ENSSSCT00000092172.1	UniProtKB/TrEMBL
	ENSSSCT00045006225.1	UniProtKB/TrEMBL
	ENSSSCT00055034929.1	UniProtKB/TrEMBL
	ENSSSCT00070054136.1	UniProtKB/TrEMBL
Gene3D-CATH	Rhodopsin 7-helix transmembrane proteins	UniProtKB/TrEMBL
InterPro	GPCR_Rhodpsn	UniProtKB/TrEMBL
	GPCR_Rhodpsn_7TM	UniProtKB/TrEMBL
	Olfact_rcpt	UniProtKB/TrEMBL
NCBI Gene	LOC100520074	ENTREZGENE
PANTHER	OLFACTORY RECEPTOR	UniProtKB/TrEMBL
	OLFACTORY RECEPTOR 418	UniProtKB/TrEMBL
Pfam	7tm_4	UniProtKB/TrEMBL
PRINTS	GPCRRHODOPSN	UniProtKB/TrEMBL
	OLFACTORYR	UniProtKB/TrEMBL
PROSITE	G_PROTEIN_RECEP_F1_1	UniProtKB/TrEMBL
	G_PROTEIN_RECEP_F1_2	UniProtKB/TrEMBL
Superfamily-SCOP	Family A G protein-coupled receptor-like	UniProtKB/TrEMBL
UniProt	A0A4X1VVI9	ENTREZGENE, UniProtKB/TrEMBL
	A0A8W4FCY0	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar