FUT4 (fucosyltransferase 4) - Rat Genome Database

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Gene: FUT4 (fucosyltransferase 4) Sus scrofa
Analyze
Symbol: FUT4
Name: fucosyltransferase 4
RGD ID: 14251710
Description: ENCODES a protein that exhibits alpha-(1->3)-fucosyltransferase activity (ortholog); INVOLVED IN glycosphingolipid biosynthetic process (ortholog); Lewis x epitope biosynthetic process (ortholog); protein N-linked glycosylation (ortholog); ASSOCIATED WITH ataxia telangiectasia (ortholog); intellectual disability (ortholog); thrombosis (ortholog); FOUND IN cell periphery (inferred); cell surface (inferred); Golgi apparatus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: alpha-(1,3)-fucosyltransferase 4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl926,679,868 - 26,681,541 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1926,679,540 - 26,686,217 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2930,433,511 - 30,436,409 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
FUT4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl926,679,868 - 26,681,541 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1926,679,540 - 26,686,217 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2930,433,511 - 30,436,409 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FUT4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381194,543,921 - 94,549,895 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1194,543,921 - 94,549,895 (+)EnsemblGRCh38hg38GRCh38
GRCh371194,277,087 - 94,283,061 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361193,916,775 - 93,922,712 (+)NCBINCBI36Build 36hg18NCBI36
Build 341193,916,774 - 93,922,712NCBI
Celera1191,564,827 - 91,570,875 (+)NCBICelera
Cytogenetic Map11q21NCBI
HuRef1190,342,221 - 90,348,273 (+)NCBIHuRef
CHM1_11194,160,008 - 94,166,060 (+)NCBICHM1_1
T2T-CHM13v2.01194,550,967 - 94,556,942 (+)NCBIT2T-CHM13v2.0
Fut4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39914,659,755 - 14,663,418 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl914,659,616 - 14,663,689 (-)EnsemblGRCm39 Ensembl
GRCm38914,748,459 - 14,752,122 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl914,748,320 - 14,752,393 (-)EnsemblGRCm38mm10GRCm38
MGSCv37914,552,903 - 14,556,566 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36914,498,852 - 14,502,515 (-)NCBIMGSCv36mm8
Celera912,028,933 - 12,032,596 (-)NCBICelera
Cytogenetic Map9A2NCBI
cM Map94.3NCBI
Fut4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8819,868,178 - 19,872,139 (-)NCBIGRCr8
mRatBN7.2811,586,721 - 11,590,682 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl811,586,721 - 11,590,682 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx815,571,456 - 15,575,419 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0813,869,199 - 13,873,162 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0811,844,759 - 11,848,737 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0813,258,768 - 13,262,729 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl813,258,768 - 13,262,729 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0813,199,560 - 13,203,521 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4811,541,524 - 11,545,485 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1811,541,524 - 11,545,485 (-)NCBI
Celera813,056,457 - 13,060,418 (-)NCBICelera
Cytogenetic Map8q12NCBI
Fut4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955605397,721 - 398,470 (-)NCBIChiLan1.0ChiLan1.0
FUT4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2995,379,390 - 95,413,344 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11196,470,878 - 96,507,402 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01189,550,637 - 89,566,111 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11193,034,946 - 93,041,893 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1193,036,119 - 93,037,711 (+)Ensemblpanpan1.1panPan2
FUT4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1216,386,665 - 6,390,109 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl216,389,021 - 6,390,793 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha216,397,366 - 6,401,819 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0216,567,061 - 6,570,571 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1216,354,240 - 6,358,357 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0216,419,443 - 6,420,749 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0216,466,083 - 6,470,537 (-)NCBIUU_Cfam_GSD_1.0
Fut4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494779,461,440 - 79,474,084 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936674419,808 - 421,925 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936674418,751 - 428,998 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FUT4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1185,747,612 - 85,752,557 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl185,748,886 - 85,750,481 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604340,024,888 - 40,028,623 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fut4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473539,220,525 - 39,224,289 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in FUT4
149 total Variants

Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000093815   ⟹   ENSSSCP00000079730
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl926,679,868 - 26,681,541 (+)Ensembl
RefSeq Acc Id: XM_013979290   ⟹   XP_013834744
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1926,679,540 - 26,686,217 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013834744 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000079730.1
Reference Protein Sequences
RefSeq Acc Id: XP_013834744   ⟸   XM_013979290
- Sequence:
RefSeq Acc Id: ENSSSCP00000079730   ⟸   ENSSSCT00000093815
Protein Domains
Fucosyltransferase N-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000062029 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000093815.1 UniProtKB/TrEMBL
Gene3D-CATH Glycosyl transferase family 10, C-terminal domain UniProtKB/TrEMBL
InterPro Glyco_tran_10_N UniProtKB/TrEMBL
  Glyco_trans_10 UniProtKB/TrEMBL
  GT10-like_C_sf UniProtKB/TrEMBL
NCBI Gene FUT4 ENTREZGENE
PANTHER ALPHA- 1,3 -FUCOSYLTRANSFERASE UniProtKB/TrEMBL
  ALPHA-(1,3)-FUCOSYLTRANSFERASE 4 UniProtKB/TrEMBL
Pfam Glyco_tran_10_N UniProtKB/TrEMBL
  Glyco_transf_10 UniProtKB/TrEMBL
Superfamily-SCOP UDP-Glycosyltransferase/glycogen phosphorylase UniProtKB/TrEMBL
UniProt A0A8W4FN42_PIG UniProtKB/TrEMBL