LY6K (lymphocyte antigen 6 family member K) - Rat Genome Database

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Gene: LY6K (lymphocyte antigen 6 family member K) Sus scrofa
Analyze
Symbol: LY6K
Name: lymphocyte antigen 6 family member K
RGD ID: 14249775
Description: INVOLVED IN binding of sperm to zona pellucida (ortholog); flagellated sperm motility (ortholog); FOUND IN cell surface (ortholog); cytoplasm (ortholog); plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: lymphocyte antigen 6K
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.141,391,736 - 1,436,059 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
LY6K
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.141,391,736 - 1,436,059 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
LY6K
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388142,700,111 - 142,705,127 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8142,700,111 - 142,705,127 (+)EnsemblGRCh38hg38GRCh38
GRCh378143,781,529 - 143,786,545 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 368143,778,533 - 143,782,613 (+)NCBINCBI36Build 36hg18NCBI36
Build 348143,778,532 - 143,782,613NCBI
Celera8140,092,617 - 140,096,675 (+)NCBICelera
Cytogenetic Map8q24.3NCBI
HuRef8139,034,186 - 139,038,245 (+)NCBIHuRef
CHM1_18143,821,802 - 143,825,860 (+)NCBICHM1_1
T2T-CHM13v2.08143,843,499 - 143,848,515 (+)NCBIT2T-CHM13v2.0
Ly6k
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391574,668,723 - 74,671,817 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1574,668,723 - 74,671,835 (-)EnsemblGRCm39 Ensembl
GRCm381574,796,874 - 74,799,968 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1574,796,874 - 74,799,986 (-)EnsemblGRCm38mm10GRCm38
MGSCv371574,627,304 - 74,630,398 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361574,624,129 - 74,627,221 (-)NCBIMGSCv36mm8
Celera1576,303,885 - 76,306,872 (-)NCBICelera
Cytogenetic Map15D3NCBI
cM Map1534.28NCBI
Ly6k
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87108,572,732 - 108,575,450 (-)NCBIGRCr8
mRatBN7.27106,683,749 - 106,712,802 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7106,683,753 - 106,686,372 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7108,441,875 - 108,444,593 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07110,665,554 - 110,668,272 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07110,611,482 - 110,614,200 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07116,103,644 - 116,107,148 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7116,034,104 - 116,106,368 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07116,006,433 - 116,009,930 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47112,913,516 - 112,916,259 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera7103,084,911 - 103,088,415 (-)NCBICelera
Cytogenetic Map7q34NCBI
LY6K
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27160,135,981 - 160,139,120 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan18135,659,297 - 135,667,012 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v08139,410,297 - 139,415,018 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.18142,455,216 - 142,458,786 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8142,455,216 - 142,459,487 (+)Ensemblpanpan1.1panPan2
LY6K
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ROS_Cfam_1.01337,262,979 - 37,268,231 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11336,981,624 - 36,987,226 (-)NCBIUMICH_Zoey_3.1
UU_Cfam_GSD_1.01337,493,418 - 37,498,677 (-)NCBIUU_Cfam_GSD_1.0
Ly6k
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244053031,624,386 - 1,626,605 (+)NCBIHiC_Itri_2
LY6K
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18136,946,193 - 136,949,557 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660393,003,805 - 3,009,020 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in LY6K
387 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system hemolymphoid system
High
Medium
Low
Below cutoff 3 2 3

Sequence


Reference Sequences
RefSeq Acc Id: XM_021088773   ⟹   XP_020944432
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.141,391,736 - 1,401,451 (+)NCBI
Sequence:
RefSeq Acc Id: XR_002343042
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.141,391,736 - 1,436,059 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_020944432   ⟸   XM_021088773
- UniProtKB: A0A287ALH7 (UniProtKB/TrEMBL),   A0A4X1UTL0 (UniProtKB/TrEMBL),   A0A8D0LLY8 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
UPAR/Ly6


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000033594 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005019196 UniProtKB/TrEMBL
  ENSSSCG00035052348 UniProtKB/TrEMBL
  ENSSSCG00040059212 UniProtKB/TrEMBL
  ENSSSCG00045005752 UniProtKB/TrEMBL
  ENSSSCG00050066670 UniProtKB/TrEMBL
  ENSSSCG00055029076 UniProtKB/TrEMBL
  ENSSSCG00065024435 UniProtKB/TrEMBL
  ENSSSCG00070020123 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000064969 ENTREZGENE
  ENSSSCT00000064969.2 UniProtKB/TrEMBL
  ENSSSCT00005030240.1 UniProtKB/TrEMBL
  ENSSSCT00005030264.1 UniProtKB/TrEMBL
  ENSSSCT00035069759.1 UniProtKB/TrEMBL
  ENSSSCT00040080437.1 UniProtKB/TrEMBL
  ENSSSCT00045009561.1 UniProtKB/TrEMBL
  ENSSSCT00050090832.1 UniProtKB/TrEMBL
  ENSSSCT00055057712.1 UniProtKB/TrEMBL
  ENSSSCT00065032633.1 UniProtKB/TrEMBL
  ENSSSCT00070039900.1 UniProtKB/TrEMBL
Gene3D-CATH 2.10.60.10 UniProtKB/TrEMBL
InterPro CD59_antigen_CS UniProtKB/TrEMBL
  LY6_UPA_recep-like UniProtKB/TrEMBL
  Snake_toxin-like_sf UniProtKB/TrEMBL
NCBI Gene LY6K ENTREZGENE
PANTHER GLYCOSYL-PHOSPHATIDYLINOSITOL-ANCHORED MOLECULE-LIKE PROTEIN-RELATED UniProtKB/TrEMBL
  LYMPHOCYTE ANTIGEN 6K UniProtKB/TrEMBL
Pfam UPAR_LY6 UniProtKB/TrEMBL
PROSITE LY6_UPAR UniProtKB/TrEMBL
SMART SM00134 UniProtKB/TrEMBL
Superfamily-SCOP SSF57302 UniProtKB/TrEMBL
UniProt A0A287ALH7 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1UTL0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0LLY8 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:89904 ENTREZGENE