LOC100626020 (ribonuclease 7) - Rat Genome Database

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Gene: LOC100626020 (ribonuclease 7) Sus scrofa
Analyze
Symbol: LOC100626020
Name: ribonuclease 7
RGD ID: 14238711
Description: ENCODES a protein that exhibits ribonuclease A activity (ortholog); INVOLVED IN defense response to fungus (inferred); defense response to Gram-negative bacterium (inferred); defense response to Gram-positive bacterium (inferred); ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); purine nucleoside phosphorylase deficiency (ortholog); FOUND IN extracellular region (inferred); extracellular space (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ribonuclease A family member 7; RNASE7
RGD Orthologs
Human
Bonobo
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1778,092,656 - 78,096,093 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LOC100626020
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1778,092,656 - 78,096,093 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
RNASE8
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381421,057,822 - 21,058,455 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1421,057,822 - 21,058,455 (+)EnsemblGRCh38hg38GRCh38
GRCh371421,525,981 - 21,526,614 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361420,595,892 - 20,596,356 (+)NCBINCBI36Build 36hg18NCBI36
Build 341420,595,891 - 20,596,356NCBI
Celera141,386,941 - 1,387,405 (+)NCBICelera
Cytogenetic Map14q11.2NCBI
HuRef141,647,027 - 1,647,491 (+)NCBIHuRef
CHM1_11421,528,167 - 21,528,631 (+)NCBICHM1_1
T2T-CHM13v2.01415,255,254 - 15,255,887 (+)NCBIT2T-CHM13v2.0
RNASE8
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21522,509,197 - 22,509,942 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11421,725,684 - 21,726,429 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0141,872,595 - 1,873,331 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11419,954,587 - 19,955,239 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1419,954,680 - 19,955,147 (+)Ensemblpanpan1.1panPan2
RNASE8
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12921,530,614 - 21,532,638 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2921,531,675 - 21,532,139 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605924,903,514 - 24,904,318 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in LOC100626020
41 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

nervous system
High
Medium
Low
Below cutoff 1

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021099313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_021099313   ⟹   XP_020954972
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1778,092,656 - 78,096,093 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_020954972   ⟸   XM_021099313
- UniProtKB: A0A4X1UU00 (UniProtKB/TrEMBL),   I3LHY8 (UniProtKB/TrEMBL),   A0A8D1JTE6 (UniProtKB/TrEMBL),   A0A8D1CJA0 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
Ribonuclease A-domain


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000029936 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005021862 UniProtKB/TrEMBL
  ENSSSCG00015081218 UniProtKB/TrEMBL
  ENSSSCG00025041228 UniProtKB/TrEMBL
  ENSSSCG00030042235 UniProtKB/TrEMBL
  ENSSSCG00035000021 UniProtKB/TrEMBL
  ENSSSCG00040016899 UniProtKB/TrEMBL
  ENSSSCG00045004175 UniProtKB/TrEMBL
  ENSSSCG00050003813 UniProtKB/TrEMBL
  ENSSSCG00055015154 UniProtKB/TrEMBL
  ENSSSCG00060024907 UniProtKB/TrEMBL
  ENSSSCG00065057154 UniProtKB/TrEMBL
  ENSSSCG00070020194 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000031823 ENTREZGENE
  ENSSSCT00000031823.3 UniProtKB/TrEMBL
  ENSSSCT00005034494.1 UniProtKB/TrEMBL
  ENSSSCT00015110767.1 UniProtKB/TrEMBL
  ENSSSCT00025055855.1 UniProtKB/TrEMBL
  ENSSSCT00030058766.1 UniProtKB/TrEMBL
  ENSSSCT00035000023.1 UniProtKB/TrEMBL
  ENSSSCT00040022743.1 UniProtKB/TrEMBL
  ENSSSCT00045006960.1 UniProtKB/TrEMBL
  ENSSSCT00050005159.1 UniProtKB/TrEMBL
  ENSSSCT00055029860.1 UniProtKB/TrEMBL
  ENSSSCT00060033736.1 UniProtKB/TrEMBL
  ENSSSCT00065078234.1 UniProtKB/TrEMBL
  ENSSSCT00070040056.1 UniProtKB/TrEMBL
Gene3D-CATH 3.10.130.10 UniProtKB/TrEMBL
InterPro RNaseA UniProtKB/TrEMBL
  RNaseA-like_dom_sf UniProtKB/TrEMBL
  RNaseA_AS UniProtKB/TrEMBL
  RNaseA_domain UniProtKB/TrEMBL
NCBI Gene LOC100626020 ENTREZGENE
PANTHER PTHR11437 UniProtKB/TrEMBL
  RIBONUCLEASE 7 UniProtKB/TrEMBL
Pfam RnaseA UniProtKB/TrEMBL
PRINTS RIBONUCLEASE UniProtKB/TrEMBL
PROSITE RNASE_PANCREATIC UniProtKB/TrEMBL
SMART RNAse_Pc UniProtKB/TrEMBL
Superfamily-SCOP SSF54076 UniProtKB/TrEMBL
UniProt A0A4X1UU00 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1CJA0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1JTE6 ENTREZGENE, UniProtKB/TrEMBL
  I3LHY8 ENTREZGENE
UniProt Secondary I3LHY8 UniProtKB/TrEMBL