UNC13D (unc-13 homolog D) - Rat Genome Database

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Gene: UNC13D (unc-13 homolog D) Sus scrofa
Analyze
Symbol: UNC13D
Name: unc-13 homolog D
RGD ID: 14236628
Description: ENCODES a protein that exhibits small GTPase binding (inferred); INVOLVED IN defense response to virus (ortholog); dense core granule priming (ortholog); establishment of localization in cell (ortholog); ASSOCIATED WITH Chediak-Higashi syndrome (ortholog); Familial Hemophagocytic Lymphohistiocytoses (ortholog); familial hemophagocytic lymphohistiocytosis 3 (ortholog); FOUND IN cytosol (inferred); endosome (inferred); exocytic vesicle (inferred); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: protein unc-13 homolog D
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl125,573,668 - 5,589,085 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1125,573,428 - 5,598,914 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2125,520,083 - 5,535,817 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
UNC13D
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl125,573,668 - 5,589,085 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1125,573,428 - 5,598,914 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2125,520,083 - 5,535,817 (+)NCBISscrofa10.2Sscrofa10.2susScr3
UNC13D
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381775,827,225 - 75,844,404 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1775,827,225 - 75,844,785 (-)EnsemblGRCh38hg38GRCh38
GRCh371773,823,306 - 73,840,485 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361771,334,901 - 71,352,393 (-)NCBINCBI36Build 36hg18NCBI36
Celera1770,413,355 - 70,430,847 (-)NCBICelera
Cytogenetic Map17q25.1NCBI
HuRef1769,249,056 - 69,266,442 (-)NCBIHuRef
CHM1_11773,888,239 - 73,905,757 (-)NCBICHM1_1
T2T-CHM13v2.01776,720,377 - 76,737,555 (-)NCBIT2T-CHM13v2.0
Unc13d
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911115,952,921 - 115,969,321 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11115,952,921 - 115,968,787 (-)EnsemblGRCm39 Ensembl
GRCm3811116,062,095 - 116,078,495 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11116,062,095 - 116,077,961 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711115,923,410 - 115,939,275 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611115,878,186 - 115,894,051 (-)NCBIMGSCv36mm8
Celera11127,824,298 - 127,840,219 (-)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1180.91NCBI
Unc13d
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810101,795,652 - 101,810,409 (-)NCBIGRCr8
mRatBN7.210101,296,755 - 101,311,513 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10101,296,776 - 101,311,687 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx10106,358,330 - 106,372,954 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010105,821,421 - 105,836,045 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.010101,217,675 - 101,232,432 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.010104,613,907 - 104,628,664 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10104,613,928 - 104,628,676 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010103,656,707 - 103,671,473 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410106,170,475 - 106,185,215 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.110106,184,978 - 106,199,719 (-)NCBI
Celera1099,870,790 - 99,885,526 (-)NCBICelera
Cytogenetic Map10q32.1NCBI
Unc13d
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555066,407,723 - 6,423,406 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555066,407,073 - 6,423,406 (+)NCBIChiLan1.0ChiLan1.0
UNC13D
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21991,871,152 - 91,889,518 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11796,695,680 - 96,714,177 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01769,777,570 - 69,794,877 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11775,327,849 - 75,345,282 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1775,328,572 - 75,344,842 (-)Ensemblpanpan1.1panPan2
UNC13D
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.194,753,300 - 4,766,751 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl94,753,166 - 4,766,756 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha95,433,452 - 5,446,892 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.095,423,494 - 5,436,930 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl95,423,348 - 5,436,929 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.195,463,219 - 5,476,653 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.095,573,315 - 5,586,743 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.095,633,988 - 5,647,426 (+)NCBIUU_Cfam_GSD_1.0
Unc13d
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244056025,388,869 - 5,403,744 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365941,008,327 - 1,021,878 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365941,008,215 - 1,023,023 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UNC13D
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11645,836,659 - 45,856,805 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1645,838,175 - 45,857,201 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607716,591,807 - 16,612,493 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Unc13d
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248015,721,391 - 5,736,294 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248015,720,998 - 5,736,122 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in UNC13D
735 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1 2
Low 10 4 3 4 1 13 2 3 1
Below cutoff 1 10

Sequence


RefSeq Acc Id: ENSSSCT00000018725   ⟹   ENSSSCP00000018223
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl125,573,668 - 5,589,085 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000043027   ⟹   ENSSSCP00000045003
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl125,573,971 - 5,589,085 (+)Ensembl
RefSeq Acc Id: XM_005653883   ⟹   XP_005653940
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1125,574,967 - 5,589,088 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021066609   ⟹   XP_020922268
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1125,573,428 - 5,597,894 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021066610   ⟹   XP_020922269
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1125,573,428 - 5,597,894 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021066611   ⟹   XP_020922270
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1125,574,967 - 5,597,894 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021066612   ⟹   XP_020922271
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1125,573,428 - 5,597,894 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021066613   ⟹   XP_020922272
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1125,574,299 - 5,589,092 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021066615   ⟹   XP_020922274
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1125,573,428 - 5,598,914 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021066616   ⟹   XP_020922275
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1125,575,025 - 5,589,087 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021066617   ⟹   XP_020922276
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1125,577,043 - 5,597,894 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021066618   ⟹   XP_020922277
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1125,577,324 - 5,597,894 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005653940 (Get FASTA)   NCBI Sequence Viewer  
  XP_020922268 (Get FASTA)   NCBI Sequence Viewer  
  XP_020922269 (Get FASTA)   NCBI Sequence Viewer  
  XP_020922270 (Get FASTA)   NCBI Sequence Viewer  
  XP_020922271 (Get FASTA)   NCBI Sequence Viewer  
  XP_020922272 (Get FASTA)   NCBI Sequence Viewer  
  XP_020922274 (Get FASTA)   NCBI Sequence Viewer  
  XP_020922275 (Get FASTA)   NCBI Sequence Viewer  
  XP_020922276 (Get FASTA)   NCBI Sequence Viewer  
  XP_020922277 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000018223
  ENSSSCP00000018223.3
  ENSSSCP00000045003.3
  ENSSSCP00025022506.1
  ENSSSCP00025022575.1
  ENSSSCP00025022623.1
  ENSSSCP00025022680.1
  ENSSSCP00025022732.1
  ENSSSCP00025022787.1
  ENSSSCP00030003040.1
  ENSSSCP00030003042.1
  ENSSSCP00030003044.1
  ENSSSCP00030003046.1
  ENSSSCP00035026941.1
  ENSSSCP00035026947.1
  ENSSSCP00035026959.1
  ENSSSCP00035026978.1
  ENSSSCP00035026981.1
  ENSSSCP00035026987.1
  ENSSSCP00040044350.1
  ENSSSCP00040044502.1
  ENSSSCP00040044644.1
  ENSSSCP00040044794.1
  ENSSSCP00040044896.1
  ENSSSCP00040045000.1
  ENSSSCP00045035166.1
  ENSSSCP00045035341.1
  ENSSSCP00045035543.1
  ENSSSCP00045035765.1
  ENSSSCP00050009941.1
  ENSSSCP00050009945.1
  ENSSSCP00050009954.1
  ENSSSCP00050009960.1
  ENSSSCP00055019835.1
  ENSSSCP00055019944.1
  ENSSSCP00055020081.1
  ENSSSCP00055020168.1
  ENSSSCP00055020225.1
  ENSSSCP00060016377.1
  ENSSSCP00060016379.1
  ENSSSCP00060016387.1
  ENSSSCP00065034096.1
  ENSSSCP00065034107.1
  ENSSSCP00070034413.1
RefSeq Acc Id: XP_020922274   ⟸   XM_021066615
- Peptide Label: isoform X6
- UniProtKB: A0A8D1A1F7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020922268   ⟸   XM_021066609
- Peptide Label: isoform X1
- UniProtKB: A0A8D0RV80 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020922271   ⟸   XM_021066612
- Peptide Label: isoform X3
- UniProtKB: A0A8D0RVS7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020922269   ⟸   XM_021066610
- Peptide Label: isoform X1
- UniProtKB: A0A8D0RV80 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020922272   ⟸   XM_021066613
- Peptide Label: isoform X4
- UniProtKB: F1RVY9 (UniProtKB/TrEMBL),   A0A8D1KL57 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020922270   ⟸   XM_021066611
- Peptide Label: isoform X2
- UniProtKB: A0A8D0RV80 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005653940   ⟸   XM_005653883
- Peptide Label: isoform X5
- UniProtKB: A0A4X1UYL2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020922275   ⟸   XM_021066616
- Peptide Label: isoform X7
- UniProtKB: A0A8D1QFT4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020922276   ⟸   XM_021066617
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_020922277   ⟸   XM_021066618
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: ENSSSCP00000018223   ⟸   ENSSSCT00000018725
RefSeq Acc Id: ENSSSCP00000045003   ⟸   ENSSSCT00000043027
Protein Domains
C2   MHD1   MHD2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000017200 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025038823 UniProtKB/TrEMBL
  ENSSSCG00030005010 UniProtKB/TrEMBL
  ENSSSCG00035049855 UniProtKB/TrEMBL
  ENSSSCG00040072033 UniProtKB/TrEMBL
  ENSSSCG00045029571 UniProtKB/TrEMBL
  ENSSSCG00050017335 UniProtKB/TrEMBL
  ENSSSCG00055012690 UniProtKB/TrEMBL
  ENSSSCG00060028480 UniProtKB/TrEMBL
  ENSSSCG00065057286 UniProtKB/TrEMBL
  ENSSSCG00070020637 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000018725 ENTREZGENE
  ENSSSCT00000018725.5 UniProtKB/TrEMBL
  ENSSSCT00000043027.3 UniProtKB/TrEMBL
  ENSSSCT00025052799.1 UniProtKB/TrEMBL
  ENSSSCT00025052973.1 UniProtKB/TrEMBL
  ENSSSCT00025053098.1 UniProtKB/TrEMBL
  ENSSSCT00025053273.1 UniProtKB/TrEMBL
  ENSSSCT00025053391.1 UniProtKB/TrEMBL
  ENSSSCT00025053511.1 UniProtKB/TrEMBL
  ENSSSCT00030006813.1 UniProtKB/TrEMBL
  ENSSSCT00030006815.1 UniProtKB/TrEMBL
  ENSSSCT00030006817.1 UniProtKB/TrEMBL
  ENSSSCT00030006819.1 UniProtKB/TrEMBL
  ENSSSCT00035066436.1 UniProtKB/TrEMBL
  ENSSSCT00035066460.1 UniProtKB/TrEMBL
  ENSSSCT00035066484.1 UniProtKB/TrEMBL
  ENSSSCT00035066527.1 UniProtKB/TrEMBL
  ENSSSCT00035066535.1 UniProtKB/TrEMBL
  ENSSSCT00035066542.1 UniProtKB/TrEMBL
  ENSSSCT00040099106.1 UniProtKB/TrEMBL
  ENSSSCT00040099381.1 UniProtKB/TrEMBL
  ENSSSCT00040099602.1 UniProtKB/TrEMBL
  ENSSSCT00040099819.1 UniProtKB/TrEMBL
  ENSSSCT00040100000.1 UniProtKB/TrEMBL
  ENSSSCT00040100211.1 UniProtKB/TrEMBL
  ENSSSCT00045050506.1 UniProtKB/TrEMBL
  ENSSSCT00045050782.1 UniProtKB/TrEMBL
  ENSSSCT00045051108.1 UniProtKB/TrEMBL
  ENSSSCT00045051441.1 UniProtKB/TrEMBL
  ENSSSCT00050023596.1 UniProtKB/TrEMBL
  ENSSSCT00050023604.1 UniProtKB/TrEMBL
  ENSSSCT00050023619.1 UniProtKB/TrEMBL
  ENSSSCT00050023631.1 UniProtKB/TrEMBL
  ENSSSCT00055024980.1 UniProtKB/TrEMBL
  ENSSSCT00055025107.1 UniProtKB/TrEMBL
  ENSSSCT00055025276.1 UniProtKB/TrEMBL
  ENSSSCT00055025386.1 UniProtKB/TrEMBL
  ENSSSCT00055025470.1 UniProtKB/TrEMBL
  ENSSSCT00060038521.1 UniProtKB/TrEMBL
  ENSSSCT00060038524.1 UniProtKB/TrEMBL
  ENSSSCT00060038533.1 UniProtKB/TrEMBL
  ENSSSCT00065078438.1 UniProtKB/TrEMBL
  ENSSSCT00065078465.1 UniProtKB/TrEMBL
  ENSSSCT00070041006.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.357.50 UniProtKB/TrEMBL
  2.60.40.150 UniProtKB/TrEMBL
InterPro C2_dom UniProtKB/TrEMBL
  C2_domain_sf UniProtKB/TrEMBL
  MUN_dom UniProtKB/TrEMBL
  Munc13_1 UniProtKB/TrEMBL
  Munc13_dom-2 UniProtKB/TrEMBL
KEGG Report ssc:100521332 UniProtKB/TrEMBL
NCBI Gene UNC13D ENTREZGENE
PANTHER PROTEIN UNC-13 HOMOLOG D UniProtKB/TrEMBL
  UNC-13-4A, ISOFORM B UniProtKB/TrEMBL
Pfam MUN UniProtKB/TrEMBL
  PF00168 UniProtKB/TrEMBL
PROSITE MHD1 UniProtKB/TrEMBL
  MHD2 UniProtKB/TrEMBL
  PS50004 UniProtKB/TrEMBL
SMART SM00239 UniProtKB/TrEMBL
Superfamily-SCOP SSF49562 UniProtKB/TrEMBL
UniProt A0A287AM91_PIG UniProtKB/TrEMBL
  A0A4X1UYL2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0RV80 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0RVS7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0VAA0_PIG UniProtKB/TrEMBL
  A0A8D0VAA5_PIG UniProtKB/TrEMBL
  A0A8D0VAN7_PIG UniProtKB/TrEMBL
  A0A8D1A1F7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1A993_PIG UniProtKB/TrEMBL
  A0A8D1KL57 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1LLI9_PIG UniProtKB/TrEMBL
  A0A8D1QFT4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1QIN3_PIG UniProtKB/TrEMBL
  A0A8D2BGA9_PIG UniProtKB/TrEMBL
  F1RVY9 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:94703 ENTREZGENE