CABP1 (calcium binding protein 1)

Gene: CABP1 (calcium binding protein 1) Sus scrofa

Analyze

Symbol:

CABP1

Name:

calcium binding protein 1

RGD ID:

14234650

Description:

ENCODES a protein that exhibits calcium ion binding (ortholog); calcium-dependent protein binding (ortholog); identical protein binding (ortholog); INVOLVED IN modification of postsynaptic actin cytoskeleton (ortholog); negative regulation of cell communication by electrical coupling (ortholog); negative regulation of protein import into nucleus (ortholog); PARTICIPATES IN calcium/calcium-mediated signaling pathway; ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); schizophrenia (ortholog); Serotonin Syndrome (ortholog); FOUND IN axon (ortholog); dendrite (ortholog); glutamatergic synapse (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

calcium-binding protein 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CABP1 (calcium binding protein 1)	HGNC	EggNOG, Ensembl, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Cabp1 (calcium binding protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Cabp1 (calcium binding protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Cabp1 (calcium binding protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CABP1 (calcium binding protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CABP1 (calcium binding protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Cabp1 (calcium binding protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CABP1 (calcium binding protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cabp1 (calcium binding protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	40,563,159 - 40,587,970 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	40,563,302 - 40,587,975 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	42,996,071 - 43,055,074 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Chemical and Drug Induced Liver Injury (ISO)

schizophrenia (ISO)

Serotonin Syndrome (ISO)

temporal lobe epilepsy (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

modification of postsynaptic actin cytoskeleton (ISO)

negative regulation of cell communication by electrical coupling (ISO)

negative regulation of protein import into nucleus (ISO)

negative regulation of voltage-gated calcium channel activity (ISO)

postsynapse to nucleus signaling pathway (ISO)

regulation of postsynapse to nucleus signaling pathway (ISO)

regulation of voltage-gated calcium channel activity (ISO)

visual perception (IEA)

Cellular Component

axon (ISO)

cytoplasm (IEA)

dendrite (ISO)

endoplasmic reticulum (IEA)

endoplasmic reticulum membrane (IEA)

glutamatergic synapse (ISO)

Golgi membrane (IEA)

membrane (IEA)

neuronal cell body (ISO)

nucleus (ISO)

perinuclear region of cytoplasm (ISO)

plasma membrane (IEA)

postsynaptic density (IEA)

postsynaptic density, intracellular component (ISO)

protein-containing complex (ISO)

secretory granule (ISO)

subplasmalemmal coating (ISO)

Molecular Function

calcium channel regulator activity (IEA)

calcium ion binding (IEA,ISO)

calcium-dependent protein binding (IEA,ISO)

carbohydrate binding (IEA)

identical protein binding (ISO)

metal ion binding (IEA)

nuclear localization sequence binding (ISO)

protein binding (ISO)

protein domain specific binding (ISO)

transmembrane transporter binding (ISO)

type 3 metabotropic glutamate receptor binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

calcium/calcium-mediated signaling pathway (ISO)

References

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

CABP1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	40,563,159 - 40,587,970 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	40,563,302 - 40,587,975 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	42,996,071 - 43,055,074 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CABP1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	120,640,626 - 120,680,866 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	120,640,626 - 120,667,324 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	121,078,429 - 121,105,127 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	119,562,805 - 119,589,510 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	12	119,551,090 - 119,567,845	NCBI
Celera	12	120,712,715 - 120,739,394 (+)	NCBI		Celera
Cytogenetic Map	12	q24.31	NCBI
HuRef	12	118,087,780 - 118,114,466 (+)	NCBI		HuRef
CHM1_1	12	121,047,209 - 121,073,905 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	12	120,629,781 - 120,669,988 (+)	NCBI		T2T-CHM13v2.0

Cabp1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	115,306,750 - 115,332,440 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	115,306,748 - 115,332,440 (-)	Ensembl		GRCm39 Ensembl
GRCm38	5	115,168,691 - 115,194,381 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	115,168,689 - 115,194,381 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	115,618,700 - 115,636,130 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	115,429,955 - 115,447,120 (-)	NCBI		MGSCv36	mm8
Celera	5	112,265,082 - 112,282,516 (-)	NCBI		Celera
Cytogenetic Map	5	F	NCBI
cM Map	5	55.99	NCBI

Cabp1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	47,045,914 - 47,109,614 (+)	NCBI		GRCr8
mRatBN7.2	12	41,385,234 - 41,448,930 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	41,378,897 - 41,448,927 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	12	42,591,942 - 42,616,455 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	43,205,596 - 43,230,109 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	42,266,164 - 42,290,676 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	47,185,449 - 47,209,785 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	47,179,664 - 47,209,784 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	12	48,980,523 - 49,004,882 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	12	42,696,383 - 42,720,566 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	12	42,568,234 - 42,583,529 (+)	NCBI
Celera	12	43,043,462 - 43,067,622 (+)	NCBI		Celera
Cytogenetic Map	12	q16	NCBI

Cabp1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955455	11,000,763 - 11,068,922 (-)	NCBI	ChiLan1.0	ChiLan1.0

CABP1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	128,710,772 - 128,737,428 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	128,707,150 - 128,733,803 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	118,224,046 - 118,250,696 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	121,605,979 - 121,623,960 (+)	NCBI	panpan1.1	PanPan1.1	panPan2

CABP1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	26	16,492,484 - 16,523,265 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	26	16,494,980 - 16,525,873 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	26	16,758,371 - 16,789,256 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	26	16,768,053 - 16,789,251 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	26	16,719,024 - 16,749,945 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	26	16,794,703 - 16,825,583 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	26	16,836,775 - 16,867,667 (+)	NCBI		UU_Cfam_GSD_1.0

Cabp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	145,825,410 - 145,847,946 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936668	324,299 - 339,334 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CABP1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	115,934,747 - 116,021,645 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666037	129,075,237 - 129,103,423 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cabp1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624747	13,027,844 - 13,050,165 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624747	13,027,839 - 13,050,262 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in CABP1
396 total Variants

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_001928684	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021072519	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021072520	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000096	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01125400	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSSCT00000010863 ⟹ ENSSSCP00000010578

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	14	40,563,159 - 40,587,970 (+)	Ensembl

RefSeq Acc Id:

ENSSSCT00000087207 ⟹ ENSSSCP00000070688

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	14	40,572,386 - 40,587,970 (+)	Ensembl

RefSeq Acc Id:

ENSSSCT00000103671 ⟹ ENSSSCP00000081134

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	14	40,572,386 - 40,587,970 (+)	Ensembl

RefSeq Acc Id:

XM_001928684 ⟹ XP_001928719

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	14	40,571,506 - 40,587,970 (+)	NCBI

Sequence:

show sequence

GAACCTGGAGGAATGAGGACCCGCCAGTTACCCAAAAAGTTTCATTCTGGGACCTTGAAAACCG
CTTTGCAAGGGGCGGCCTCTTGGCTCTGCGCCTCAAGGAAGCCCATGAAAAATCCTCTCTCAGG
AGGATCAGGTGGGGGATTAGGAGAAGGTTCATAGTACCCCCCACCCCCCAACCCCCGCTCTTGC
CTGCTGTGCCAGCACTGCCTCCATCAGGACCCCCTTGGGTCAGAGAGACTGTACCGGCCAAGGG
AGCGGAAGGAGCTGCCATTGGCTCAGCTGTGCTTCCAGCCCTGGAGCCTCATCCCAATCAGTGA
GGAGGCAAGTGTGAAAAATGGAGCGTGATGGGGAGTCGTCACAAGATCTTCTAGGGCCTCAACT
GGAGCTGCCTGCTCTCAATCCAGCTGCGATTGCCAGCGGGCGACTAAGATGCGTGTTTGTCCTC
AGGTGCCCGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACGTACGCATAAGGTTGGGAGC
TGGGAGGCAACCTGGCTTTGGGGGCCCAAACTAGCCTGCTTCCCCTTCTGGGTCTGCTGGCCTA
ATTCCCAGCTGCAGCTGCCGTTTCTGGGCTCCCCTCCCTGAGGCAATCTCCCCGCAGATTTGAC
AGCGGGAGAGGAGGGGCCGAGGGAAGGGGAATGAACCGGGAAGGGGACTCAGCTCTAATCTGAT
GTAGATGATCCGGCAGCCTTCTCCAGCTTAGCTGCCCTCTGCCATCAGCTCTCTGGGCGATGAT
TTTCTCTGTGCCTGCACTCTCCCCTCCTGCCTTCATCTCCTTAAGAAAGTGTCCAGAAAGTTAA
ACCCACACACACAAACACACACACACACAATCCACCAAAAAAAAAAAAAAAAAAAATCAGGGAG
CAGGAGCAGGCAGACGAGTAAGAGAGCACGCGCACAAGCGAGAGGGCTCAGCGCGGTCTTGGAG
GAAGAGCGGCGCAGGCAGAGGGAGGCTGGGGTTCGCGGTGACCAGGACTAAGGTCTCTTAGCCC
TCAGGAGCCTCCTTCATGGACCCGGGGATCCTGAGAGGGGCTGCCTCAGCTTAGGATGGGCAAC
TGTGTGAAGTCTCCACTGAGAAATCTCTCAAGGAAGATGCGCCAGGAGGAGACCAGCTACACGG
TGGTGCAGACAAGTGAGGAGGGGCTGGCGGCCAGCGGTGAACTCCCGGGACCACTCCTGATGCT
GGCCCAGAACTGCGCTGTCATGCACAACCTGCTGGGCCCCGCTTGCATTTTCCTGCGTAAGGGC
TTCGCGGAGAACAGGCAGCCTGACAGATCGCTGCGACCAGAGGAGATTGAAGAGCTCCGGGAGG
CCTTCAAGGAATTTGACAAGGACAAGGATGGCTACATCAACTGCCGGGACCTGGGCAACTGCAT
GCGCACTATGGGCTACATGCCCACTGAGATGGAGCTCATTGAGCTGTCCCAGCAGATCAACATG
AACCTGGGTGGCCATGTAGATTTTGATGACTTTGTGGAGCTAATGGGACCTAAACTCCTGGCGG
AGACGGCAGATATGATTGGAGTAAAAGAGCTGCGAGATGCTTTCCGAGAGTTTGACACCAATGG
TGATGGGGAGATAAGCACCAGTGAGTTACGAGAGGCCATGAGGAAGCTCCTGGGTCATCAGGTG
GGACACCGAGACATAGAGGAAATCATCCGAGACGTGGACCTCAATGGGGATGGACGAGTGGACT
TTGAAGAGTTTGTCCGGATGATGTCCCGCTGAGGCCACCAGGGCCCCTCCAGGACTGCCAAGCG
CCACAGGTGGGAGAAGAGGAGCCTGAGCTCGCCTCACCTGCCGCAGCCGCAGAGAGTCCAGAAG
ATACTGGCGGATGGGGCCTGCCTGCACCCCAGGGAGGTGCCTACCCCGGACCCCCACCCCTCTG
CACTGTGAAAGACTCACGACTCCTGCAACTGGAAAGGGGTGGGGGCGCCGGCTGACGAGGAGGC
CACCGTGCCAAGCCGGCAGAGGTCAGGCCAGGTGCCGCGTGCCAGGGACCCAGTCGCCGCTGGC
CAGGTGGGCCTGGAGCCGCCAGCGGGCCCCACACAGCATGCCTGCCCCGGGGGCAAAGCCTCTC
GCTGCCCTCCTCCGTTCTGCGCCCATCCCAGCTCGCCTCAGCCCTGTTATCTCAGAACCAATAA
AAGTATTTCCAGG

hide sequence

RefSeq Acc Id:

XM_021072519 ⟹ XP_020928178

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	14	40,563,302 - 40,587,975 (+)	NCBI

Sequence:

show sequence

CGCACCGCCAGCCGCCGGGGAGCTCGGGGCTCCGGGCGTAGAGGCTGCGCTGTCACATGGGCGG
TGGCGACGGGGCCGCATTTAAGCGGCCGGGGGACGGCGCCCGCCTCCAGCGCGTCCTCGGGCTT
GGCTCCCGCCGGGCGCCCCACTCTCTGCCCGCCGGGGGCCCGGCGCCGCGCCGCACCGCGCCGC
CCCCGCCGGGCCATGCGAGCGCGGGCCCCGCCGCGATGAGCTCCCACATCGCCAAAAGCGAGTC
CAAGACGTCGCTGCTGAAGGCGGCGGCAGCGAGCGGGGGCAGCCGGGCTCCCCGCCACGGCCCT
GCCAGGGAGCCACTGCTGCCCAGCCGCCGGCTGCCCGGCCCTTGCCCAGGCACGCCGATACCGT
CAGGGGACCCCAGTTCGCGGAGGCCCCTGTGCCGGCCAGCGCCGCGAGAGGAGGGCGCTCGGGG
CAGCCGGCGCGGGCTCCCCCAGGCGCACTGCAGGCCCCGGGAGGCGCCGCCGGCCGCGGCATCC
CGACCTTCGCCGCCGTCGCCGCTGCCGCCGGCCCGCGGGCGGGATGGGGAGGAACGGGGTCTGT
CCCCGGCTCTCGGCCTCCGAGGCTCGCTGCGAGCCCCGGGTCGCGGGGACTCAGCTCCAGCTGC
CGCGTCCGAGGCAGACCCGTTCCTCCACCAGCTGCGCCCCATGCTCAGCTCCGCCTTCGGCCAG
GACAGATCGCTGCGACCAGAGGAGATTGAAGAGCTCCGGGAGGCCTTCAAGGAATTTGACAAGG
ACAAGGATGGCTACATCAACTGCCGGGACCTGGGCAACTGCATGCGCACTATGGGCTACATGCC
CACTGAGATGGAGCTCATTGAGCTGTCCCAGCAGATCAACATGAACCTGGGTGGCCATGTAGAT
TTTGATGACTTTGTGGAGCTAATGGGACCTAAACTCCTGGCGGAGACGGCAGATATGATTGGAG
TAAAAGAGCTGCGAGATGCTTTCCGAGAGTTTGACACCAATGGTGATGGGGAGATAAGCACCAG
TGAGTTACGAGAGGCCATGAGGAAGCTCCTGGGTCATCAGGTGGGACACCGAGACATAGAGGAA
ATCATCCGAGACGTGGACCTCAATGGGGATGGACGAGTGGACTTTGAAGAGTTTGTCCGGATGA
TGTCCCGCTGAGGCCACCAGGGCCCCTCCAGGACTGCCAAGCGCCACAGGTGGGAGAAGAGGAG
CCTGAGCTCGCCTCACCTGCCGCAGCCGCAGAGAGTCCAGAAGATACTGGCGGATGGGGCCTGC
CTGCACCCCAGGGAGGTGCCTACCCCGGACCCCCACCCCTCTGCACTGTGAAAGACTCACGACT
CCTGCAACTGGAAAGGGGTGGGGGCGCCGGCTGACGAGGAGGCCACCGTGCCAAGCCGGCAGAG
GTCAGGCCAGGTGCCGCGTGCCAGGGACCCAGTCGCCGCTGGCCAGGTGGGCCTGGAGCCGCCA
GCGGGCCCCACACAGCATGCCTGCCCCGGGGGCAAAGCCTCTCGCTGCCCTCCTCCGTTCTGCG
CCCATCCCAGCTCGCCTCAGCCCTGTTATCTCAGAACCAATAAAAGTATTTCCAGGAGAAA

hide sequence

RefSeq Acc Id:

XM_021072520 ⟹ XP_020928179

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	14	40,571,506 - 40,587,975 (+)	NCBI

Sequence:

show sequence

GAACCTGGAGGAATGAGGACCCGCCAGTTACCCAAAAAGTTTCATTCTGGGACCTTGAAAACCG
CTTTGCAAGGGGCGGCCTCTTGGCTCTGCGCCTCAAGGAAGCCCATGAAAAATCCTCTCTCAGG
AGGATCAGGTGGGGGATTAGGAGAAGGTTCATAGTACCCCCCACCCCCCAACCCCCGCTCTTGC
CTGCTGTGCCAGCACTGCCTCCATCAGGACCCCCTTGGGTCAGAGAGACTGTACCGGCCAAGGG
AGCGGAAGGAGCTGCCATTGGCTCAGCTGTGCTTCCAGCCCTGGAGCCTCATCCCAATCAGTGA
GGAGGCAAGTGTGAAAAATGGAGCGTGATGGGGAGTCGTCACAAGATCTTCTAGGGCCTCAACT
GGAGCTGCCTGCTCTCAATCCAGCTGCGATTGCCAGCGGGCGACTAAGATGCGTGTTTGTCCTC
AGGTGCCCGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACGTACGCATAAGGTTGGGAGC
TGGGAGGCAACCTGGCTTTGGGGGCCCAAACTAGCCTGCTTCCCCTTCTGGGTCTGCTGGCCTA
ATTCCCAGCTGCAGCTGCCGTTTCTGGGCTCCCCTCCCTGAGGCAATCTCCCCGCAGATTTGAC
AGCGGGAGAGGAGGGGCCGAGGGAAGGGGAATGAACCGGGAAGGGGACTCAGCTCTAATCTGAT
GTAGATGATCCGGCAGCCTTCTCCAGCTTAGCTGCCCTCTGCCATCAGCTCTCTGGGCGATGAT
TTTCTCTGTGCCTGCACTCTCCCCTCCTGCCTTCATCTCCTTAAGAAAGTGTCCAGAAAGTTAA
ACCCACACACACAAACACACACACACACAATCCACCAAAAAAAAAAAAAAAAAAAATCAGGGAG
CAGGAGCAGGCAGACGAGTAAGAGAGCACGCGCACAAGCGAGAGGGCTCAGCGCGGTCTTGGAG
GAAGAGCGGCGCAGGCAGAGGGAGGCTGGGGTTCGCGGTGACCAGGACTAAGGTCTCTTAGCCC
TCAGGAGCCTCCTTCATGGACCCGGGGATCCTGAGAGGGGCTGCCTCAGCTTAGGATGGGCAAC
TGTGTGAAGTCTCCACTGAGAAATCTCTCAAGGAAGGACAGATCGCTGCGACCAGAGGAGATTG
AAGAGCTCCGGGAGGCCTTCAAGGAATTTGACAAGGACAAGGATGGCTACATCAACTGCCGGGA
CCTGGGCAACTGCATGCGCACTATGGGCTACATGCCCACTGAGATGGAGCTCATTGAGCTGTCC
CAGCAGATCAACATGAACCTGGGTGGCCATGTAGATTTTGATGACTTTGTGGAGCTAATGGGAC
CTAAACTCCTGGCGGAGACGGCAGATATGATTGGAGTAAAAGAGCTGCGAGATGCTTTCCGAGA
GTTTGACACCAATGGTGATGGGGAGATAAGCACCAGTGAGTTACGAGAGGCCATGAGGAAGCTC
CTGGGTCATCAGGTGGGACACCGAGACATAGAGGAAATCATCCGAGACGTGGACCTCAATGGGG
ATGGACGAGTGGACTTTGAAGAGTTTGTCCGGATGATGTCCCGCTGAGGCCACCAGGGCCCCTC
CAGGACTGCCAAGCGCCACAGGTGGGAGAAGAGGAGCCTGAGCTCGCCTCACCTGCCGCAGCCG
CAGAGAGTCCAGAAGATACTGGCGGATGGGGCCTGCCTGCACCCCAGGGAGGTGCCTACCCCGG
ACCCCCACCCCTCTGCACTGTGAAAGACTCACGACTCCTGCAACTGGAAAGGGGTGGGGGCGCC
GGCTGACGAGGAGGCCACCGTGCCAAGCCGGCAGAGGTCAGGCCAGGTGCCGCGTGCCAGGGAC
CCAGTCGCCGCTGGCCAGGTGGGCCTGGAGCCGCCAGCGGGCCCCACACAGCATGCCTGCCCCG
GGGGCAAAGCCTCTCGCTGCCCTCCTCCGTTCTGCGCCCATCCCAGCTCGCCTCAGCCCTGTTA
TCTCAGAACCAATAAAAGTATTTCCAGGAGAAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_001928719	(Get FASTA)	NCBI Sequence Viewer
	XP_020928178	(Get FASTA)	NCBI Sequence Viewer
	XP_020928179	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000010578
	ENSSSCP00000010578.5
	ENSSSCP00000070688
	ENSSSCP00000070688.1
	ENSSSCP00000081134
	ENSSSCP00000081134.1
	ENSSSCP00005040127.1
	ENSSSCP00005040141.1
	ENSSSCP00015033973.1
	ENSSSCP00015034035.1
	ENSSSCP00015034123.1
	ENSSSCP00015034170.1
	ENSSSCP00025027059.1
	ENSSSCP00025027191.1
	ENSSSCP00025027210.1
	ENSSSCP00025027242.1
	ENSSSCP00025027283.1
	ENSSSCP00025027319.1
	ENSSSCP00030012206.1
	ENSSSCP00030012210.1
	ENSSSCP00030012215.1
	ENSSSCP00030012241.1
	ENSSSCP00035022575.1
	ENSSSCP00035022577.1
	ENSSSCP00035022579.1
	ENSSSCP00035022685.1
	ENSSSCP00040000195.1
	ENSSSCP00040000201.1
	ENSSSCP00040000205.1
	ENSSSCP00040000248.1
	ENSSSCP00045043138.1
	ENSSSCP00045043182.1
	ENSSSCP00045043216.1
	ENSSSCP00045043277.1
	ENSSSCP00050009126.1
	ENSSSCP00050009129.1
	ENSSSCP00050009140.1
	ENSSSCP00050009242.1
	ENSSSCP00055026513.1
	ENSSSCP00055026555.1
	ENSSSCP00055026616.1
	ENSSSCP00055026710.1
	ENSSSCP00060021061.1
	ENSSSCP00060021072.1
	ENSSSCP00060021073.1
	ENSSSCP00060021077.1
	ENSSSCP00060021081.1
	ENSSSCP00060021083.1
	ENSSSCP00065028726.1
	ENSSSCP00065028727.1
	ENSSSCP00065028730.1
	ENSSSCP00065029053.1
	ENSSSCP00070010569.1
	ENSSSCP00070010608.1
	ENSSSCP00070010627.1
	ENSSSCP00070010634.1
	ENSSSCP00070010643.1
	ENSSSCP00070010646.1

RefSeq Acc Id:	XP_020928178 ⟸ XM_021072519
- Peptide Label:	isoform X1
- UniProtKB:	A0A4X1T5H1 (UniProtKB/TrEMBL), A0A480E2A1 (UniProtKB/TrEMBL), F1RJI3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGGGDGAAFKRPGDGARLQRVLGLGSRRAPHSLPAGGPAPRRTAPPPPGHASAGPAAMSSHIAK SESKTSLLKAAAASGGSRAPRHGPAREPLLPSRRLPGPCPGTPIPSGDPSSRRPLCRPAPREEG ARGSRRGLPQAHCRPREAPPAAASRPSPPSPLPPARGRDGEERGLSPALGLRGSLRAPGRGDSA PAAASEADPFLHQLRPMLSSAFGQDRSLRPEEIEELREAFKEFDKDKDGYINCRDLGNCMRTMG YMPTEMELIELSQQINMNLGGHVDFDDFVELMGPKLLAETADMIGVKELRDAFREFDTNGDGEI STSELREAMRKLLGHQVGHRDIEEIIRDVDLNGDGRVDFEEFVRMMSR hide sequence

RefSeq Acc Id:	XP_020928179 ⟸ XM_021072520
- Peptide Label:	isoform X3
- UniProtKB:	A0A4X1T6U8 (UniProtKB/TrEMBL), A0A5G2R0Q4 (UniProtKB/TrEMBL), A0A8D0PGH2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGNCVKSPLRNLSRKDRSLRPEEIEELREAFKEFDKDKDGYINCRDLGNCMRTMGYMPTEMELI ELSQQINMNLGGHVDFDDFVELMGPKLLAETADMIGVKELRDAFREFDTNGDGEISTSELREAM RKLLGHQVGHRDIEEIIRDVDLNGDGRVDFEEFVRMMSR hide sequence

RefSeq Acc Id:	XP_001928719 ⟸ XM_001928684
- Peptide Label:	isoform X2
- UniProtKB:	A0A4X1T798 (UniProtKB/TrEMBL), A0A8W4FQ73 (UniProtKB/TrEMBL), A0A8D0KKH6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGNCVKSPLRNLSRKMRQEETSYTVVQTSEEGLAASGELPGPLLMLAQNCAVMHNLLGPACIFL RKGFAENRQPDRSLRPEEIEELREAFKEFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQ INMNLGGHVDFDDFVELMGPKLLAETADMIGVKELRDAFREFDTNGDGEISTSELREAMRKLLG HQVGHRDIEEIIRDVDLNGDGRVDFEEFVRMMSR hide sequence

RefSeq Acc Id:

ENSSSCP00000081134 ⟸ ENSSSCT00000103671

RefSeq Acc Id:

ENSSSCP00000070688 ⟸ ENSSSCT00000087207

RefSeq Acc Id:

ENSSSCP00000010578 ⟸ ENSSSCT00000010863

Protein Domains

EF-hand Malectin

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000056057	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00005040464	UniProtKB/TrEMBL
	ENSSSCG00015062045	UniProtKB/TrEMBL
	ENSSSCG00025046568	UniProtKB/TrEMBL
	ENSSSCG00030019814	UniProtKB/TrEMBL
	ENSSSCG00030019870	UniProtKB/TrEMBL
	ENSSSCG00035042205	UniProtKB/TrEMBL
	ENSSSCG00035042450	UniProtKB/TrEMBL
	ENSSSCG00040000622	UniProtKB/TrEMBL
	ENSSSCG00040000872	UniProtKB/TrEMBL
	ENSSSCG00045035583	UniProtKB/TrEMBL
	ENSSSCG00045035873	UniProtKB/TrEMBL
	ENSSSCG00050015969	UniProtKB/TrEMBL
	ENSSSCG00050016153	UniProtKB/TrEMBL
	ENSSSCG00055016774	UniProtKB/TrEMBL
	ENSSSCG00055017032	UniProtKB/TrEMBL
	ENSSSCG00060036307	UniProtKB/TrEMBL
	ENSSSCG00065048439	UniProtKB/TrEMBL
	ENSSSCG00065048914	UniProtKB/TrEMBL
	ENSSSCG00070006700	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000010863	ENTREZGENE
	ENSSSCT00000010863.5	UniProtKB/TrEMBL
	ENSSSCT00000087207	ENTREZGENE
	ENSSSCT00000087207.2	UniProtKB/TrEMBL
	ENSSSCT00000103671	ENTREZGENE
	ENSSSCT00000103671.1	UniProtKB/TrEMBL
	ENSSSCT00005064939.1	UniProtKB/TrEMBL
	ENSSSCT00005064955.1	UniProtKB/TrEMBL
	ENSSSCT00015083876.1	UniProtKB/TrEMBL
	ENSSSCT00015084005.1	UniProtKB/TrEMBL
	ENSSSCT00015084195.1	UniProtKB/TrEMBL
	ENSSSCT00015084289.1	UniProtKB/TrEMBL
	ENSSSCT00025063500.1	UniProtKB/TrEMBL
	ENSSSCT00025063772.1	UniProtKB/TrEMBL
	ENSSSCT00025063826.1	UniProtKB/TrEMBL
	ENSSSCT00025063910.1	UniProtKB/TrEMBL
	ENSSSCT00025064029.1	UniProtKB/TrEMBL
	ENSSSCT00025064136.1	UniProtKB/TrEMBL
	ENSSSCT00030027378.1	UniProtKB/TrEMBL
	ENSSSCT00030027385.1	UniProtKB/TrEMBL
	ENSSSCT00030027392.1	UniProtKB/TrEMBL
	ENSSSCT00030027437.1	UniProtKB/TrEMBL
	ENSSSCT00035056109.1	UniProtKB/TrEMBL
	ENSSSCT00035056115.1	UniProtKB/TrEMBL
	ENSSSCT00035056118.1	UniProtKB/TrEMBL
	ENSSSCT00035056399.1	UniProtKB/TrEMBL
	ENSSSCT00040000781.1	UniProtKB/TrEMBL
	ENSSSCT00040000796.1	UniProtKB/TrEMBL
	ENSSSCT00040000815.1	UniProtKB/TrEMBL
	ENSSSCT00040001008.1	UniProtKB/TrEMBL
	ENSSSCT00045061397.1	UniProtKB/TrEMBL
	ENSSSCT00045061451.1	UniProtKB/TrEMBL
	ENSSSCT00045061503.1	UniProtKB/TrEMBL
	ENSSSCT00045061588.1	UniProtKB/TrEMBL
	ENSSSCT00050021748.1	UniProtKB/TrEMBL
	ENSSSCT00050021759.1	UniProtKB/TrEMBL
	ENSSSCT00050021780.1	UniProtKB/TrEMBL
	ENSSSCT00050021977.1	UniProtKB/TrEMBL
	ENSSSCT00055033301.1	UniProtKB/TrEMBL
	ENSSSCT00055033358.1	UniProtKB/TrEMBL
	ENSSSCT00055033438.1	UniProtKB/TrEMBL
	ENSSSCT00055033577.1	UniProtKB/TrEMBL
	ENSSSCT00060049210.1	UniProtKB/TrEMBL
	ENSSSCT00060049232.1	UniProtKB/TrEMBL
	ENSSSCT00060049236.1	UniProtKB/TrEMBL
	ENSSSCT00060049241.1	UniProtKB/TrEMBL
	ENSSSCT00060049246.1	UniProtKB/TrEMBL
	ENSSSCT00060049248.1	UniProtKB/TrEMBL
	ENSSSCT00065066278.1	UniProtKB/TrEMBL
	ENSSSCT00065066284.1	UniProtKB/TrEMBL
	ENSSSCT00065066293.1	UniProtKB/TrEMBL
	ENSSSCT00065066932.1	UniProtKB/TrEMBL
	ENSSSCT00070012839.1	UniProtKB/TrEMBL
	ENSSSCT00070012888.1	UniProtKB/TrEMBL
	ENSSSCT00070012908.1	UniProtKB/TrEMBL
	ENSSSCT00070012916.1	UniProtKB/TrEMBL
	ENSSSCT00070012926.1	UniProtKB/TrEMBL
	ENSSSCT00070012929.1	UniProtKB/TrEMBL
Gene3D-CATH	EF-hand	UniProtKB/TrEMBL
	Galactose-binding lectin	UniProtKB/TrEMBL
InterPro	CaBP1/2/4/5	UniProtKB/TrEMBL
	EF-hand-dom_pair	UniProtKB/TrEMBL
	EF_Hand_1_Ca_BS	UniProtKB/TrEMBL
	EF_hand_dom	UniProtKB/TrEMBL
	Malectin_dom	UniProtKB/TrEMBL
	MLEC	UniProtKB/TrEMBL
KEGG Report	ssc:100157460	UniProtKB/TrEMBL
NCBI Gene	CABP1	ENTREZGENE
PANTHER	CALCIUM-BINDING PROTEIN 1	UniProtKB/TrEMBL
	MALECTIN	UniProtKB/TrEMBL
	PTHR13460	UniProtKB/TrEMBL
	PTHR45917	UniProtKB/TrEMBL
Pfam	EF-hand_7	UniProtKB/TrEMBL
	Malectin	UniProtKB/TrEMBL
PROSITE	EF_HAND_1	UniProtKB/TrEMBL
	EF_HAND_2	UniProtKB/TrEMBL
SMART	EFh	UniProtKB/TrEMBL
Superfamily-SCOP	SSF47473	UniProtKB/TrEMBL
UniProt	A0A480E2A1	ENTREZGENE
	A0A4X1T5E2_PIG	UniProtKB/TrEMBL
	A0A4X1T5H1	ENTREZGENE, UniProtKB/TrEMBL
	A0A4X1T684_PIG	UniProtKB/TrEMBL
	A0A4X1T6M3_PIG	UniProtKB/TrEMBL
	A0A4X1T6U8	ENTREZGENE, UniProtKB/TrEMBL
	A0A4X1T798	ENTREZGENE, UniProtKB/TrEMBL
	A0A5G2R0Q4	ENTREZGENE
	A0A8D0KKH6	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D0PGH2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8W4FQ73	ENTREZGENE
	F1RJI3	ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary	A0A480E2A1	UniProtKB/TrEMBL
	A0A5G2R0Q4	UniProtKB/TrEMBL
	A0A8W4FQ73	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

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Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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RGD Manual Annotations