RAB11FIP4 (RAB11 family interacting protein 4) - Rat Genome Database

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Gene: RAB11FIP4 (RAB11 family interacting protein 4) Sus scrofa
Analyze
Symbol: RAB11FIP4
Name: RAB11 family interacting protein 4
RGD ID: 14229180
Description: ENCODES a protein that exhibits calcium ion binding (inferred); protein homodimerization activity (inferred); small GTPase binding (inferred); INVOLVED IN endocytic recycling (inferred); regulation of cytokinesis (inferred); ASSOCIATED WITH cerebral palsy (ortholog); Developmental Disabilities (ortholog); prostate cancer (ortholog); FOUND IN cleavage furrow (inferred); endocytic vesicle (inferred); endosome (inferred); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: rab11 family-interacting protein 4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1243,364,140 - 43,474,241 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11243,360,758 - 43,474,235 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21245,195,241 - 45,303,103 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
RAB11FIP4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1243,364,140 - 43,474,241 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11243,360,758 - 43,474,235 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21245,195,241 - 45,303,103 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RAB11FIP4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381731,391,675 - 31,538,211 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1731,391,675 - 31,538,211 (+)EnsemblGRCh38hg38GRCh38
GRCh371729,718,693 - 29,865,230 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361726,742,768 - 26,889,352 (+)NCBINCBI36Build 36hg18NCBI36
Build 341726,742,767 - 26,889,352NCBI
Celera1726,666,452 - 26,785,001 (+)NCBICelera
Cytogenetic Map17q11.2NCBI
HuRef1725,912,539 - 26,075,598 (+)NCBIHuRef
CHM1_11729,764,889 - 29,927,838 (+)NCBICHM1_1
T2T-CHM13v2.01732,337,033 - 32,483,971 (+)NCBIT2T-CHM13v2.0
Rab11fip4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391179,481,847 - 79,588,842 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1179,482,038 - 79,588,849 (+)EnsemblGRCm39 Ensembl
GRCm381179,591,021 - 79,698,016 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1179,591,212 - 79,698,023 (+)EnsemblGRCm38mm10GRCm38
MGSCv371179,404,714 - 79,507,514 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361179,407,407 - 79,510,207 (+)NCBIMGSCv36mm8
Celera1189,223,898 - 89,326,618 (+)NCBICelera
Cytogenetic Map11B5NCBI
cM Map1146.88NCBI
Rab11fip4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81065,048,070 - 65,156,086 (+)NCBIGRCr8
mRatBN7.21064,550,109 - 64,658,123 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1064,550,177 - 64,654,759 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1069,176,576 - 69,282,868 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01068,681,960 - 68,788,261 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01064,151,473 - 64,252,234 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01066,942,363 - 67,051,672 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1066,942,398 - 67,048,308 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01064,598,379 - 64,705,864 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41065,780,123 - 65,883,833 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11065,863,324 - 65,896,402 (+)NCBI
Celera1063,520,873 - 63,623,693 (+)NCBICelera
Cytogenetic Map10q25NCBI
Rab11fip4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554816,469,286 - 6,548,919 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554816,501,704 - 6,554,448 (+)NCBIChiLan1.0ChiLan1.0
RAB11FIP4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21932,947,881 - 33,094,468 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11734,826,949 - 34,973,445 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01725,265,176 - 25,411,124 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11726,001,073 - 26,146,941 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1726,006,251 - 26,146,947 (-)Ensemblpanpan1.1panPan2
RAB11FIP4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1941,336,537 - 41,416,230 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl941,341,877 - 41,416,176 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha940,498,477 - 40,616,083 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0942,157,076 - 42,274,857 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl942,157,087 - 42,274,857 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1940,940,966 - 41,058,478 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0941,236,011 - 41,353,380 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0941,311,847 - 41,429,386 (-)NCBIUU_Cfam_GSD_1.0
Rab11fip4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560240,387,162 - 40,504,353 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365383,269,336 - 3,382,304 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365383,269,317 - 3,382,298 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RAB11FIP4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11624,851,474 - 24,991,482 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1624,851,595 - 24,991,361 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660755,082,170 - 5,224,352 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rab11fip4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248753,972,765 - 4,098,853 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248753,972,765 - 4,103,150 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in RAB11FIP4
5615 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 20 1 1
Low 8 2 3 5 3 1 2 3
Below cutoff 1 1 2

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000019316   ⟹   ENSSSCP00000018803
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1243,364,140 - 43,474,208 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000048584   ⟹   ENSSSCP00000039646
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1243,364,140 - 43,460,798 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000055415   ⟹   ENSSSCP00000040715
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1243,366,897 - 43,404,538 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000056850   ⟹   ENSSSCP00000044848
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1243,366,894 - 43,474,241 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000085353   ⟹   ENSSSCP00000065543
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1243,364,140 - 43,444,818 (-)Ensembl
RefSeq Acc Id: XM_003131748   ⟹   XP_003131796
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11243,360,758 - 43,474,235 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005669074   ⟹   XP_005669131
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11243,360,758 - 43,474,235 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021067457   ⟹   XP_020923116
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11243,360,758 - 43,404,599 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021067459   ⟹   XP_020923118
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11243,360,758 - 43,404,594 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_003131796   ⟸   XM_003131748
- Peptide Label: isoform X2
- UniProtKB: A0A4X1TL09 (UniProtKB/TrEMBL),   A0A287ALE5 (UniProtKB/TrEMBL),   A0A8D0XX17 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005669131   ⟸   XM_005669074
- Peptide Label: isoform X1
- UniProtKB: A0A8D0XX17 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020923116   ⟸   XM_021067457
- Peptide Label: isoform X3
- UniProtKB: A0A480TU80 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020923118   ⟸   XM_021067459
- Peptide Label: isoform X4
- UniProtKB: A0A4X1TIQ6 (UniProtKB/TrEMBL),   A0A287A9N5 (UniProtKB/TrEMBL),   A0A8D0J633 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000039646   ⟸   ENSSSCT00000048584
RefSeq Acc Id: ENSSSCP00000018803   ⟸   ENSSSCT00000019316
RefSeq Acc Id: ENSSSCP00000065543   ⟸   ENSSSCT00000085353
RefSeq Acc Id: ENSSSCP00000040715   ⟸   ENSSSCT00000055415
RefSeq Acc Id: ENSSSCP00000044848   ⟸   ENSSSCT00000056850
Protein Domains
EF-hand   FIP-RBD


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000017747 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005023894 UniProtKB/TrEMBL
  ENSSSCG00025064732 UniProtKB/TrEMBL
  ENSSSCG00030062719 UniProtKB/TrEMBL
  ENSSSCG00035072732 UniProtKB/TrEMBL
  ENSSSCG00040061737 UniProtKB/TrEMBL
  ENSSSCG00070009833 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000019316.4 UniProtKB/TrEMBL
  ENSSSCT00000055415 ENTREZGENE
  ENSSSCT00000055415.3 UniProtKB/TrEMBL
  ENSSSCT00000056850 ENTREZGENE
  ENSSSCT00000056850.3 UniProtKB/TrEMBL
  ENSSSCT00005038429.1 UniProtKB/TrEMBL
  ENSSSCT00025089272.1 UniProtKB/TrEMBL
  ENSSSCT00025089545.1 UniProtKB/TrEMBL
  ENSSSCT00025089832.1 UniProtKB/TrEMBL
  ENSSSCT00030087819.1 UniProtKB/TrEMBL
  ENSSSCT00035098475.1 UniProtKB/TrEMBL
  ENSSSCT00035098496.1 UniProtKB/TrEMBL
  ENSSSCT00040084024.1 UniProtKB/TrEMBL
  ENSSSCT00040084243.1 UniProtKB/TrEMBL
  ENSSSCT00070019058.1 UniProtKB/TrEMBL
  ENSSSCT00070019085.1 UniProtKB/TrEMBL
  ENSSSCT00070019091.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.2440 UniProtKB/TrEMBL
  EF-hand UniProtKB/TrEMBL
InterPro EF-hand-dom_pair UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/TrEMBL
  FIP-RBD_C_sf UniProtKB/TrEMBL
  Rab-bd_FIP-RBD UniProtKB/TrEMBL
KEGG Report ssc:100524645 UniProtKB/TrEMBL
NCBI Gene RAB11FIP4 ENTREZGENE
PANTHER RAB11 FAMILY-INTERACTING PROTEIN 4 UniProtKB/TrEMBL
  RAB11-FAMILY INTERACTING PROTEIN UniProtKB/TrEMBL
Pfam RBD-FIP UniProtKB/TrEMBL
PROSITE EF_HAND_2 UniProtKB/TrEMBL
  FIP_RBD UniProtKB/TrEMBL
Superfamily-SCOP SSF144270 UniProtKB/TrEMBL
  SSF47473 UniProtKB/TrEMBL
UniProt A0A287A9N5 ENTREZGENE, UniProtKB/TrEMBL
  A0A287ALE5 ENTREZGENE, UniProtKB/TrEMBL
  A0A480TU80 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1TIQ6 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1TL09 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1TLC9_PIG UniProtKB/TrEMBL
  A0A8D0J633 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0XX17 ENTREZGENE, UniProtKB/TrEMBL
  F1RJ59_PIG UniProtKB/TrEMBL
VGNC ID VGNC:92041 ENTREZGENE