RNASE10 (ribonuclease A family member 10 (inactive)) - Rat Genome Database

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Gene: RNASE10 (ribonuclease A family member 10 (inactive)) Sus scrofa
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Symbol: RNASE10
Name: ribonuclease A family member 10 (inactive)
RGD ID: 14225108
Description: ENCODES a protein that exhibits nucleic acid binding (inferred); INVOLVED IN epithelial cell morphogenesis (ortholog); heterotypic cell-cell adhesion (ortholog); male gonad development (ortholog); ASSOCIATED WITH purine nucleoside phosphorylase deficiency (ortholog); FOUND IN extracellular region (inferred)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: inactive ribonuclease-like protein 10; protein Train A; putative pancreatic ribonuclease; ribonuclease-like protein 10; TRAIN A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl778,391,475 - 78,394,035 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1778,390,612 - 78,414,401 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2783,418,433 - 83,440,160 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14561640   PMID:15253924   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
RNASE10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl778,391,475 - 78,394,035 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1778,390,612 - 78,414,401 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2783,418,433 - 83,440,160 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RNASE10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381420,504,233 - 20,513,884 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1420,505,537 - 20,513,884 (+)EnsemblGRCh38hg38GRCh38
GRCh371420,972,392 - 20,982,043 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361420,048,471 - 20,049,121 (+)NCBINCBI36Build 36hg18NCBI36
Celera14839,505 - 840,155 (+)NCBICelera
Cytogenetic Map14q11.2NCBI
HuRef141,099,688 - 1,100,338 (+)NCBIHuRef
CHM1_11420,980,647 - 20,981,297 (+)NCBICHM1_1
T2T-CHM13v2.01414,701,150 - 14,711,005 (+)NCBIT2T-CHM13v2.0
Rnase10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391451,245,208 - 51,248,218 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1451,245,208 - 51,248,215 (+)EnsemblGRCm39 Ensembl
GRCm381451,007,751 - 51,010,761 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1451,007,751 - 51,010,758 (+)EnsemblGRCm38mm10GRCm38
MGSCv371451,627,426 - 51,630,433 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361449,929,880 - 49,932,709 (+)NCBIMGSCv36mm8
Celera1447,284,967 - 47,287,974 (+)NCBICelera
Cytogenetic Map14C1NCBI
cM Map1426.34NCBI
Rnase10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81526,700,219 - 26,702,681 (+)NCBIGRCr8
mRatBN7.21524,226,687 - 24,229,149 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1524,226,691 - 24,228,561 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1526,997,864 - 27,000,326 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01527,956,742 - 27,959,203 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01526,206,416 - 26,208,878 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01527,930,581 - 27,933,873 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1527,933,211 - 27,933,849 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01531,764,636 - 31,766,642 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41526,987,636 - 26,988,274 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11527,003,335 - 27,003,973 (+)NCBI
Celera1524,548,103 - 24,548,741 (+)NCBICelera
Cytogenetic Map15p14NCBI
Rnase10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555501,328,294 - 1,331,558 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555501,326,203 - 1,331,558 (+)NCBIChiLan1.0ChiLan1.0
RNASE10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21522,013,740 - 22,022,925 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11421,230,225 - 21,239,412 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0141,378,780 - 1,385,894 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11419,430,824 - 19,434,448 (+)NCBIpanpan1.1PanPan1.1panPan2
RNASE10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11517,845,687 - 17,908,672 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1517,840,091 - 17,844,406 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1517,840,091 - 17,844,406 (+)NCBICanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1518,318,664 - 18,391,228 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01518,092,868 - 18,165,341 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1518,099,762 - 18,100,406 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11517,775,551 - 17,847,530 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01517,830,201 - 17,903,195 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01517,959,467 - 18,031,615 (+)NCBIUU_Cfam_GSD_1.0
Rnase10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864077,752,759 - 77,753,950 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936877732,012 - 734,868 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936877732,012 - 734,592 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RNASE10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12921,029,470 - 21,034,108 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2921,033,443 - 21,034,078 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605925,395,604 - 25,400,909 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rnase10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248254,655,122 - 4,655,772 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248254,653,995 - 4,664,793 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in RNASE10
600 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system nervous system renal system reproductive system respiratory system
High
Medium 1 1
Low 5 13 1
Below cutoff 2 2 1 2 2 1 1 1

Sequence


RefSeq Acc Id: ENSSSCT00000002387   ⟹   ENSSSCP00000002332
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl778,391,475 - 78,394,035 (-)Ensembl
RefSeq Acc Id: NM_001007111   ⟹   NP_001007112
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1778,391,458 - 78,394,035 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005656307   ⟹   XP_005656364
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1778,390,612 - 78,414,401 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013989060   ⟹   XP_013844514
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1778,390,612 - 78,414,401 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013989061   ⟹   XP_013844515
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1778,390,612 - 78,414,401 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013989063   ⟹   XP_013844517
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1778,390,612 - 78,408,153 (-)NCBI
Sequence:
RefSeq Acc Id: XP_005656364   ⟸   XM_005656307
- Peptide Label: isoform X1
- UniProtKB: Q8SPJ0 (UniProtKB/Swiss-Prot),   A0A8D0WTZ8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013844515   ⟸   XM_013989061
- Peptide Label: isoform X1
- UniProtKB: Q8SPJ0 (UniProtKB/Swiss-Prot),   A0A8D0WTZ8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013844514   ⟸   XM_013989060
- Peptide Label: isoform X1
- UniProtKB: Q8SPJ0 (UniProtKB/Swiss-Prot),   A0A8D0WTZ8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013844517   ⟸   XM_013989063
- Peptide Label: isoform X1
- UniProtKB: Q8SPJ0 (UniProtKB/Swiss-Prot),   A0A8D0WTZ8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001007112   ⟸   NM_001007111
- Peptide Label: precursor
- UniProtKB: Q8SPJ0 (UniProtKB/Swiss-Prot),   A0A8D0WTZ8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000002332   ⟸   ENSSSCT00000002387
Protein Domains
Ribonuclease A-domain


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000002134 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
  ENSSSCG00005022869 UniProtKB/Swiss-Prot
  ENSSSCG00015042377 UniProtKB/TrEMBL
  ENSSSCG00025004750 UniProtKB/Swiss-Prot
  ENSSSCG00030041464 UniProtKB/TrEMBL
  ENSSSCG00035001108 UniProtKB/Swiss-Prot
  ENSSSCG00040017633 UniProtKB/Swiss-Prot
  ENSSSCG00045004328 UniProtKB/Swiss-Prot
  ENSSSCG00050003190 UniProtKB/Swiss-Prot
  ENSSSCG00055016101 UniProtKB/Swiss-Prot
  ENSSSCG00060028092 UniProtKB/TrEMBL
  ENSSSCG00065060243 UniProtKB/Swiss-Prot
  ENSSSCG00070019758 UniProtKB/Swiss-Prot
Ensembl Transcript ENSSSCT00000002387 ENTREZGENE
  ENSSSCT00000002387.4 UniProtKB/Swiss-Prot
  ENSSSCT00005036143.1 UniProtKB/Swiss-Prot
  ENSSSCT00015056636.1 UniProtKB/TrEMBL
  ENSSSCT00025006430.1 UniProtKB/Swiss-Prot
  ENSSSCT00030057587.1 UniProtKB/TrEMBL
  ENSSSCT00035001341.1 UniProtKB/Swiss-Prot
  ENSSSCT00040023803.1 UniProtKB/Swiss-Prot
  ENSSSCT00045007229.1 UniProtKB/Swiss-Prot
  ENSSSCT00050004199.1 UniProtKB/Swiss-Prot
  ENSSSCT00055031721.1 UniProtKB/Swiss-Prot
  ENSSSCT00060038005.1 UniProtKB/TrEMBL
  ENSSSCT00065082526.1 UniProtKB/Swiss-Prot
  ENSSSCT00070039120.1 UniProtKB/Swiss-Prot
Gene3D-CATH 3.10.130.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro RNaseA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RNaseA-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RNaseA_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report ssc:396701 UniProtKB/Swiss-Prot
NCBI Gene RNASE10 ENTREZGENE
PANTHER INACTIVE RIBONUCLEASE-LIKE PROTEIN 10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11437 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam RnaseA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS RIBONUCLEASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART RNAse_Pc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP RNase A-like UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
UniProt A0A8D0WTZ8 ENTREZGENE, UniProtKB/TrEMBL
  Q8SPJ0 ENTREZGENE, UniProtKB/Swiss-Prot