WIPF1 (WAS/WASL interacting protein family member 1) - Rat Genome Database

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Gene: WIPF1 (WAS/WASL interacting protein family member 1) Sus scrofa
Analyze
Symbol: WIPF1
Name: WAS/WASL interacting protein family member 1
RGD ID: 14220100
Description: ENCODES a protein that exhibits protein folding chaperone (ortholog); SH3 domain binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); actin filament-based movement (ortholog); positive regulation of protein export from nucleus (ortholog); ASSOCIATED WITH atrial fibrillation (ortholog); Experimental Liver Cirrhosis (ortholog); genetic disease (ortholog); FOUND IN actin cytoskeleton (ortholog); actin filament (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: WAS/WASL-interacting protein family member 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11580,521,032 - 80,646,462 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21589,758,529 - 89,797,790 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
WIPF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11580,521,032 - 80,646,462 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21589,758,529 - 89,797,790 (-)NCBISscrofa10.2Sscrofa10.2susScr3
WIPF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382174,559,574 - 174,682,913 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2174,559,572 - 174,682,916 (-)EnsemblGRCh38hg38GRCh38
GRCh372175,424,302 - 175,547,641 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362175,132,548 - 175,255,873 (-)NCBINCBI36Build 36hg18NCBI36
Build 342175,249,808 - 175,324,811NCBI
Celera2169,037,733 - 169,161,112 (-)NCBICelera
Cytogenetic Map2q31.1NCBI
HuRef2167,305,224 - 167,428,467 (-)NCBIHuRef
CHM1_12175,430,425 - 175,553,733 (-)NCBICHM1_1
T2T-CHM13v2.02175,048,279 - 175,171,613 (-)NCBIT2T-CHM13v2.0
Wipf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39273,259,954 - 73,359,831 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl273,259,954 - 73,360,078 (-)EnsemblGRCm39 Ensembl
GRCm38273,429,610 - 73,529,487 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl273,429,610 - 73,529,734 (-)EnsemblGRCm38mm10GRCm38
MGSCv37273,267,674 - 73,367,467 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36273,230,456 - 73,330,249 (-)NCBIMGSCv36mm8
Celera275,116,177 - 75,216,066 (-)NCBICelera
Cytogenetic Map2C3NCBI
cM Map243.68NCBI
Wipf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8378,721,486 - 78,824,199 (-)NCBIGRCr8
mRatBN7.2358,314,521 - 58,416,668 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl358,314,542 - 58,372,742 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx361,708,219 - 61,766,593 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0370,291,875 - 70,350,246 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0368,056,896 - 68,115,269 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0360,150,001 - 60,207,125 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl360,150,021 - 60,166,013 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0366,633,154 - 66,690,278 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4355,944,490 - 56,003,310 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1355,840,874 - 55,899,682 (-)NCBI
Celera357,842,394 - 57,900,610 (-)NCBICelera
Cytogenetic Map3q23NCBI
Wipf1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955449760,382 - 831,007 (+)NCBIChiLan1.0ChiLan1.0
WIPF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21377,223,785 - 77,347,483 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B77,238,760 - 77,362,431 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B61,837,128 - 61,960,468 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B179,290,685 - 179,316,694 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B179,290,685 - 179,316,695 (-)Ensemblpanpan1.1panPan2
WIPF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13618,574,298 - 18,653,255 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3618,576,813 - 18,697,103 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3618,583,586 - 18,706,041 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03618,710,269 - 18,832,843 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3618,710,269 - 18,832,790 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13618,787,537 - 18,909,829 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03618,785,832 - 18,908,163 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03618,896,780 - 19,019,287 (-)NCBIUU_Cfam_GSD_1.0
Wipf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303135,759,301 - 135,874,065 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365094,314,376 - 4,427,960 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WIPF1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11060,067,384 - 60,188,234 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1060,067,015 - 60,142,823 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040139,407,277 - 139,526,553 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Wipf1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478711,787,295 - 11,822,523 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478711,787,384 - 11,908,727 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in WIPF1
3480 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 10 2 5 1 1 3
Low 2 3 2 22 2 2
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: XM_013990591   ⟹   XP_013846045
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11580,521,032 - 80,561,418 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021074983   ⟹   XP_020930642
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11580,521,032 - 80,646,462 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021074984   ⟹   XP_020930643
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11580,521,032 - 80,597,242 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021074985   ⟹   XP_020930644
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11580,521,032 - 80,646,462 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_020930642   ⟸   XM_021074983
- UniProtKB: A0A4X1UPT5 (UniProtKB/TrEMBL),   I3L5A6 (UniProtKB/TrEMBL),   A0A480VEN5 (UniProtKB/TrEMBL),   A0A8D1TJ32 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020930644   ⟸   XM_021074985
- UniProtKB: A0A4X1UPT5 (UniProtKB/TrEMBL),   I3L5A6 (UniProtKB/TrEMBL),   A0A480VEN5 (UniProtKB/TrEMBL),   A0A8D1TJ32 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020930643   ⟸   XM_021074984
- UniProtKB: A0A4X1UPT5 (UniProtKB/TrEMBL),   I3L5A6 (UniProtKB/TrEMBL),   A0A480VEN5 (UniProtKB/TrEMBL),   A0A8D1TJ32 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013846045   ⟸   XM_013990591
- UniProtKB: A0A4X1UPT5 (UniProtKB/TrEMBL),   I3L5A6 (UniProtKB/TrEMBL),   A0A480VEN5 (UniProtKB/TrEMBL),   A0A8D1TJ32 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
WH2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000027348 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015007010 UniProtKB/TrEMBL
  ENSSSCG00025033638 UniProtKB/TrEMBL
  ENSSSCG00030059883 UniProtKB/TrEMBL
  ENSSSCG00035076350 UniProtKB/TrEMBL
  ENSSSCG00040072217 UniProtKB/TrEMBL
  ENSSSCG00045006801 UniProtKB/TrEMBL
  ENSSSCG00050053864 UniProtKB/TrEMBL
  ENSSSCG00055004995 UniProtKB/TrEMBL
  ENSSSCG00060069595 UniProtKB/TrEMBL
  ENSSSCG00070019007 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000028507 ENTREZGENE
  ENSSSCT00000028507.4 UniProtKB/TrEMBL
  ENSSSCT00000039472.2 UniProtKB/TrEMBL
  ENSSSCT00000062056 ENTREZGENE
  ENSSSCT00000062056.2 UniProtKB/TrEMBL
  ENSSSCT00015009564.1 UniProtKB/TrEMBL
  ENSSSCT00015009685.1 UniProtKB/TrEMBL
  ENSSSCT00015009806.1 UniProtKB/TrEMBL
  ENSSSCT00015009847.1 UniProtKB/TrEMBL
  ENSSSCT00015009929.1 UniProtKB/TrEMBL
  ENSSSCT00025045824.1 UniProtKB/TrEMBL
  ENSSSCT00025045886.1 UniProtKB/TrEMBL
  ENSSSCT00025045956.1 UniProtKB/TrEMBL
  ENSSSCT00030083688.1 UniProtKB/TrEMBL
  ENSSSCT00030083709.1 UniProtKB/TrEMBL
  ENSSSCT00030083729.1 UniProtKB/TrEMBL
  ENSSSCT00035104032.1 UniProtKB/TrEMBL
  ENSSSCT00035104055.1 UniProtKB/TrEMBL
  ENSSSCT00035104085.1 UniProtKB/TrEMBL
  ENSSSCT00040099444.1 UniProtKB/TrEMBL
  ENSSSCT00040099493.1 UniProtKB/TrEMBL
  ENSSSCT00040099548.1 UniProtKB/TrEMBL
  ENSSSCT00045011358.1 UniProtKB/TrEMBL
  ENSSSCT00045011382.1 UniProtKB/TrEMBL
  ENSSSCT00045011408.1 UniProtKB/TrEMBL
  ENSSSCT00050073433.1 UniProtKB/TrEMBL
  ENSSSCT00055009853.1 UniProtKB/TrEMBL
  ENSSSCT00055009873.1 UniProtKB/TrEMBL
  ENSSSCT00055009891.1 UniProtKB/TrEMBL
  ENSSSCT00060095088.1 UniProtKB/TrEMBL
  ENSSSCT00060095121.1 UniProtKB/TrEMBL
  ENSSSCT00060095150.1 UniProtKB/TrEMBL
  ENSSSCT00070037521.1 UniProtKB/TrEMBL
  ENSSSCT00070037529.1 UniProtKB/TrEMBL
  ENSSSCT00070037534.1 UniProtKB/TrEMBL
  ENSSSCT00070037542.1 UniProtKB/TrEMBL
  ENSSSCT00070037556.1 UniProtKB/TrEMBL
  ENSSSCT00070037563.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.29.30 UniProtKB/TrEMBL
InterPro PH-like_dom_sf UniProtKB/TrEMBL
  WH2_dom UniProtKB/TrEMBL
NCBI Gene WIPF1 ENTREZGENE
PANTHER OS06G0326200 PROTEIN UniProtKB/TrEMBL
  WAS/WASL-INTERACTING PROTEIN FAMILY MEMBER 1 UniProtKB/TrEMBL
Pfam WH2 UniProtKB/TrEMBL
PRINTS PRICHEXTENSN UniProtKB/TrEMBL
PROSITE WH2 UniProtKB/TrEMBL
SMART WH2 UniProtKB/TrEMBL
UniProt A0A287AFT4_PIG UniProtKB/TrEMBL
  A0A287B6P4_PIG UniProtKB/TrEMBL
  A0A480VEN5 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1UMY6_PIG UniProtKB/TrEMBL
  A0A4X1UPT5 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1UPV7_PIG UniProtKB/TrEMBL
  A0A4X1UPY1_PIG UniProtKB/TrEMBL
  A0A8D0MHW9_PIG UniProtKB/TrEMBL
  A0A8D0MKJ5_PIG UniProtKB/TrEMBL
  A0A8D0MKN4_PIG UniProtKB/TrEMBL
  A0A8D0MKZ6_PIG UniProtKB/TrEMBL
  A0A8D0XM36_PIG UniProtKB/TrEMBL
  A0A8D1GQK1_PIG UniProtKB/TrEMBL
  A0A8D1TJ32 ENTREZGENE, UniProtKB/TrEMBL
  I3L5A6 ENTREZGENE, UniProtKB/TrEMBL