ILF3 (interleukin enhancer binding factor 3) - Rat Genome Database

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Gene: ILF3 (interleukin enhancer binding factor 3) Sus scrofa
Analyze
Symbol: ILF3
Name: interleukin enhancer binding factor 3
RGD ID: 14219498
Description: ENCODES a protein that exhibits enzyme binding (ortholog); INVOLVED IN defense response to virus (inferred); negative regulation of DNA-templated transcription (inferred); negative regulation of translation (inferred); FOUND IN cytoplasm (inferred); mitochondrion (inferred); nucleolus (inferred); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: interleukin enhancer-binding factor 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl269,413,982 - 69,443,214 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1269,413,875 - 69,443,216 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2269,799,231 - 69,826,499 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ILF3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl269,413,982 - 69,443,214 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1269,413,875 - 69,443,216 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2269,799,231 - 69,826,499 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ILF3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381910,654,346 - 10,692,400 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1910,654,304 - 10,692,400 (+)EnsemblGRCh38hg38GRCh38
GRCh371910,765,022 - 10,803,076 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361910,625,988 - 10,664,095 (+)NCBINCBI36Build 36hg18NCBI36
Build 341910,625,987 - 10,657,443NCBI
Celera1910,659,687 - 10,697,851 (+)NCBICelera
Cytogenetic Map19p13.2NCBI
HuRef1910,342,365 - 10,380,213 (+)NCBIHuRef
CHM1_11910,766,190 - 10,804,342 (+)NCBICHM1_1
T2T-CHM13v2.01910,780,831 - 10,818,864 (+)NCBIT2T-CHM13v2.0
Ilf3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39921,278,964 - 21,316,659 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl921,279,167 - 21,316,657 (+)EnsemblGRCm39 Ensembl
GRCm38921,367,731 - 21,405,363 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl921,367,871 - 21,405,361 (+)EnsemblGRCm38mm10GRCm38
MGSCv37921,172,447 - 21,209,805 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36921,118,985 - 21,155,723 (+)NCBIMGSCv36mm8
Celera918,636,679 - 18,674,037 (+)NCBICelera
Cytogenetic Map9A3NCBI
cM Map97.78NCBI
Ilf3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8828,198,454 - 28,236,634 (+)NCBIGRCr8
mRatBN7.2819,922,409 - 19,960,495 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl819,922,460 - 19,960,350 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx823,964,289 - 23,991,881 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0822,262,127 - 22,289,719 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0820,162,536 - 20,189,833 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0822,402,877 - 22,440,984 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl822,402,890 - 22,440,885 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0822,467,473 - 22,494,771 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4820,481,746 - 20,508,850 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1820,481,745 - 20,508,850 (+)NCBI
Celera821,324,176 - 21,351,393 (+)NCBICelera
Cytogenetic Map8q13NCBI
Ilf3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554951,827,860 - 1,844,369 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554951,814,012 - 1,844,605 (+)NCBIChiLan1.0ChiLan1.0
ILF3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22015,572,450 - 15,611,357 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11914,571,774 - 14,607,397 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01910,206,636 - 10,244,779 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11910,867,143 - 10,905,965 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1910,867,143 - 10,905,953 (+)Ensemblpanpan1.1panPan2
ILF3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12050,511,915 - 50,544,234 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2050,515,334 - 50,544,184 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2050,384,533 - 50,416,978 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02051,034,719 - 51,067,176 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2051,037,994 - 51,067,139 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12050,242,969 - 50,275,171 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02050,670,295 - 50,702,494 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02050,911,363 - 50,943,802 (-)NCBIUU_Cfam_GSD_1.0
Ilf3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118209,414,682 - 209,451,022 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936659918,074 - 940,121 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936659903,690 - 940,024 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ILF3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.169,654,632 - 9,692,202 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl69,672,453 - 9,686,793 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607410,277,704 - 10,318,529 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ilf3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248282,683,868 - 2,715,702 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ILF3
440 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 10 2 3 5 1 21 2 3 3
Low 2 1 2
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000033206   ⟹   ENSSSCP00000029712
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl269,414,026 - 69,443,214 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000034746   ⟹   ENSSSCP00000028612
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl269,413,982 - 69,443,213 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000070286   ⟹   ENSSSCP00000070198
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl269,413,990 - 69,442,904 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000093431   ⟹   ENSSSCP00000077246
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl269,414,013 - 69,443,213 (+)Ensembl
RefSeq Acc Id: XM_021083793   ⟹   XP_020939452
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1269,413,952 - 69,443,216 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021083794   ⟹   XP_020939453
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1269,413,953 - 69,443,216 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021083795   ⟹   XP_020939454
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1269,413,953 - 69,443,216 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021083796   ⟹   XP_020939455
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1269,413,953 - 69,443,216 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021083797   ⟹   XP_020939456
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1269,413,875 - 69,443,216 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021083798   ⟹   XP_020939457
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1269,413,955 - 69,443,216 (+)NCBI
Sequence:
RefSeq Acc Id: XR_002341638
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1269,413,952 - 69,443,216 (+)NCBI
Sequence:
RefSeq Acc Id: XR_002341639
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1269,413,953 - 69,443,216 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020939456   ⟸   XM_021083797
- Peptide Label: isoform X4
- UniProtKB: A0A0B8RSR5 (UniProtKB/TrEMBL),   A0A4X1VE38 (UniProtKB/TrEMBL),   K7GL83 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020939452   ⟸   XM_021083793
- Peptide Label: isoform X1
- UniProtKB: K7GL83 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020939455   ⟸   XM_021083796
- Peptide Label: isoform X3
- UniProtKB: A0A8D0PST9 (UniProtKB/TrEMBL),   K7GL83 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020939454   ⟸   XM_021083795
- Peptide Label: isoform X2
- UniProtKB: A0A8D0V2B5 (UniProtKB/TrEMBL),   K7GL83 (UniProtKB/TrEMBL),   A0A8D1N1Q8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020939453   ⟸   XM_021083794
- Peptide Label: isoform X1
- UniProtKB: K7GL83 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020939457   ⟸   XM_021083798
- Peptide Label: isoform X4
- UniProtKB: A0A0B8RSR5 (UniProtKB/TrEMBL),   A0A4X1VE38 (UniProtKB/TrEMBL),   K7GL83 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000028612   ⟸   ENSSSCT00000034746
RefSeq Acc Id: ENSSSCP00000070198   ⟸   ENSSSCT00000070286
RefSeq Acc Id: ENSSSCP00000029712   ⟸   ENSSSCT00000033206
RefSeq Acc Id: ENSSSCP00000077246   ⟸   ENSSSCT00000093431
Protein Domains
DRBM   DZF


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000013638 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005038582 UniProtKB/TrEMBL
  ENSSSCG00015060868 UniProtKB/TrEMBL
  ENSSSCG00025076008 UniProtKB/TrEMBL
  ENSSSCG00030026176 UniProtKB/TrEMBL
  ENSSSCG00035027658 UniProtKB/TrEMBL
  ENSSSCG00040004284 UniProtKB/TrEMBL
  ENSSSCG00045025304 UniProtKB/TrEMBL
  ENSSSCG00050053148 UniProtKB/TrEMBL
  ENSSSCG00055025150 UniProtKB/TrEMBL
  ENSSSCG00060032966 UniProtKB/TrEMBL
  ENSSSCG00065077897 UniProtKB/TrEMBL
  ENSSSCG00070023300 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000033206 ENTREZGENE
  ENSSSCT00000033206.4 UniProtKB/TrEMBL
  ENSSSCT00000034746 ENTREZGENE
  ENSSSCT00000034746.4 UniProtKB/TrEMBL
  ENSSSCT00000070286.2 UniProtKB/TrEMBL
  ENSSSCT00000093431 ENTREZGENE
  ENSSSCT00000093431.1 UniProtKB/TrEMBL
  ENSSSCT00005064503.1 UniProtKB/TrEMBL
  ENSSSCT00005064739.1 UniProtKB/TrEMBL
  ENSSSCT00005064793.1 UniProtKB/TrEMBL
  ENSSSCT00015088939.1 UniProtKB/TrEMBL
  ENSSSCT00015089140.1 UniProtKB/TrEMBL
  ENSSSCT00015089415.1 UniProtKB/TrEMBL
  ENSSSCT00025105129.1 UniProtKB/TrEMBL
  ENSSSCT00025105157.1 UniProtKB/TrEMBL
  ENSSSCT00025105190.1 UniProtKB/TrEMBL
  ENSSSCT00030036577.1 UniProtKB/TrEMBL
  ENSSSCT00030036589.1 UniProtKB/TrEMBL
  ENSSSCT00030036599.1 UniProtKB/TrEMBL
  ENSSSCT00035036575.1 UniProtKB/TrEMBL
  ENSSSCT00035036595.1 UniProtKB/TrEMBL
  ENSSSCT00035036604.1 UniProtKB/TrEMBL
  ENSSSCT00035036619.1 UniProtKB/TrEMBL
  ENSSSCT00040005638.1 UniProtKB/TrEMBL
  ENSSSCT00040005645.1 UniProtKB/TrEMBL
  ENSSSCT00040005649.1 UniProtKB/TrEMBL
  ENSSSCT00045043182.1 UniProtKB/TrEMBL
  ENSSSCT00045043503.1 UniProtKB/TrEMBL
  ENSSSCT00045043810.1 UniProtKB/TrEMBL
  ENSSSCT00050072382.1 UniProtKB/TrEMBL
  ENSSSCT00050072386.1 UniProtKB/TrEMBL
  ENSSSCT00050072393.1 UniProtKB/TrEMBL
  ENSSSCT00055053259.1 UniProtKB/TrEMBL
  ENSSSCT00055053486.1 UniProtKB/TrEMBL
  ENSSSCT00055053688.1 UniProtKB/TrEMBL
  ENSSSCT00060044820.1 UniProtKB/TrEMBL
  ENSSSCT00060044829.1 UniProtKB/TrEMBL
  ENSSSCT00060044833.1 UniProtKB/TrEMBL
  ENSSSCT00065108684.1 UniProtKB/TrEMBL
  ENSSSCT00065108708.1 UniProtKB/TrEMBL
  ENSSSCT00065108716.1 UniProtKB/TrEMBL
  ENSSSCT00070047024.1 UniProtKB/TrEMBL
  ENSSSCT00070047037.1 UniProtKB/TrEMBL
  ENSSSCT00070047042.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1410.40 UniProtKB/TrEMBL
  3.30.160.20 UniProtKB/TrEMBL
  3.30.460.10 UniProtKB/TrEMBL
InterPro dsRBD_dom UniProtKB/TrEMBL
  DZF_dom UniProtKB/TrEMBL
  DZF_dom_C UniProtKB/TrEMBL
  DZF_dom_N UniProtKB/TrEMBL
  ILF3/NF90 UniProtKB/TrEMBL
  NT_sf UniProtKB/TrEMBL
NCBI Gene ILF3 ENTREZGENE
PANTHER PTHR45762:SF4 UniProtKB/TrEMBL
  ZINC FINGER RNA-BINDING PROTEIN UniProtKB/TrEMBL
Pfam dsrm UniProtKB/TrEMBL
  DZF UniProtKB/TrEMBL
  DZF_C UniProtKB/TrEMBL
PROSITE DS_RBD UniProtKB/TrEMBL
  DZF UniProtKB/TrEMBL
SMART DSRM UniProtKB/TrEMBL
  DZF UniProtKB/TrEMBL
Superfamily-SCOP dsRNA-binding domain-like UniProtKB/TrEMBL
UniProt A0A0B8RSR5 ENTREZGENE
  A0A4X1VDG2_PIG UniProtKB/TrEMBL
  A0A4X1VE38 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1VG09_PIG UniProtKB/TrEMBL
  A0A5G2QZ85_PIG UniProtKB/TrEMBL
  A0A8D0PNF0_PIG UniProtKB/TrEMBL
  A0A8D0PST9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0TNM4_PIG UniProtKB/TrEMBL
  A0A8D0V2B5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1N1Q8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1S4K7_PIG UniProtKB/TrEMBL
  K7GL83 ENTREZGENE, UniProtKB/TrEMBL
  K7GP99_PIG UniProtKB/TrEMBL
UniProt Secondary A0A8W4FEF8 UniProtKB/TrEMBL
VGNC ID VGNC:89120 ENTREZGENE