SLAMF6 (SLAM family member 6) - Rat Genome Database

Name: SLAMF6
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: SLAMF6 (SLAM family member 6) Sus scrofa

Analyze

Symbol:

SLAMF6

Name:

SLAM family member 6

RGD ID:

14211866

Description:

INVOLVED IN natural killer cell differentiation (ortholog); natural killer cell proliferation (ortholog); ASSOCIATED WITH autoimmune interstitial lung, joint, and kidney disease (ortholog); gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog); FOUND IN external side of plasma membrane (inferred); membrane (inferred); plasma membrane (inferred)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SLAMF6 (SLAM family member 6)	HGNC	EggNOG, Ensembl, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Slamf6 (SLAM family member 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Slamf6 (SLAM family member 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Slamf6 (SLAM family member 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SLAMF6 (SLAM family member 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SLAMF6 (SLAM family member 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Slamf6 (SLAM family member 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SLAMF6 (SLAM family member 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Slamf6 (SLAM family member 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	89,980,786 - 90,003,645 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	89,980,592 - 90,004,222 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	97,870,913 - 97,893,024 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autoimmune interstitial lung, joint, and kidney disease (ISO)

gastrointestinal stromal tumor (ISO)

parathyroid carcinoma (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

natural killer cell differentiation (ISO)

natural killer cell proliferation (ISO)

positive regulation of interleukin-17 production (IEA)

positive regulation of natural killer cell mediated cytotoxicity (IEA)

positive regulation of type II interferon production (IEA)

T cell activation (IEA)

T-helper 17 cell lineage commitment (IEA)

Cellular Component

external side of plasma membrane (IEA)

membrane (IEA)

plasma membrane (IEA)

Molecular Function

protein binding (ISO)

References

Additional References at PubMed

PMID:14681463	PMID:30032202

Genomics

Comparative Map Data

SLAMF6
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	89,980,786 - 90,003,645 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	89,980,592 - 90,004,222 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	97,870,913 - 97,893,024 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SLAMF6
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	160,485,036 - 160,523,255 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	160,485,030 - 160,523,262 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	160,454,826 - 160,493,045 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	158,721,444 - 158,759,666 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	157,267,892 - 157,306,115	NCBI
Celera	1	133,523,548 - 133,561,781 (-)	NCBI		Celera
Cytogenetic Map	1	q23.2-q23.3	NCBI
HuRef	1	131,811,030 - 131,849,265 (-)	NCBI		HuRef
CHM1_1	1	161,850,201 - 161,888,416 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	159,622,119 - 159,660,340 (-)	NCBI		T2T-CHM13v2.0

Slamf6
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	171,745,002 - 171,776,525 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	171,745,082 - 171,780,737 (+)	Ensembl		GRCm39 Ensembl
GRCm38	1	171,917,458 - 171,948,958 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	171,917,515 - 171,953,170 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	173,847,668 - 173,873,999 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	173,754,212 - 173,780,543 (+)	NCBI		MGSCv36	mm8
Celera	1	174,769,000 - 174,795,180 (+)	NCBI		Celera
Cytogenetic Map	1	H3	NCBI
cM Map	1	79.54	NCBI

Slamf6
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	86,916,956 - 86,937,697 (+)	NCBI		GRCr8
mRatBN7.2	13	84,384,561 - 84,405,300 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	84,383,742 - 84,405,300 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	13	86,887,900 - 86,908,642 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	88,288,179 - 88,308,918 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	85,473,001 - 85,493,730 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	90,300,160 - 90,321,781 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	90,301,006 - 90,322,457 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	13	94,823,716 - 94,844,891 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	13	87,883,459 - 87,904,207 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	13	83,996,895 - 84,017,638 (+)	NCBI		Celera
Cytogenetic Map	13	q24	NCBI

Slamf6
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955468	12,233,629 - 12,264,502 (-)	NCBI	ChiLan1.0	ChiLan1.0

SLAMF6
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	89,327,888 - 89,367,231 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	89,055,259 - 89,107,209 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	135,838,862 - 135,878,207 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	139,761,121 - 139,799,348 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	139,761,121 - 139,799,348 (-)	Ensembl	panpan1.1		panPan2

SLAMF6
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	38	21,742,228 - 21,769,521 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	38	21,742,301 - 21,764,494 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	38	21,816,924 - 21,844,184 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	38	21,859,417 - 21,886,676 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	38	21,746,431 - 21,774,320 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	38	22,160,475 - 22,187,731 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	38	22,570,244 - 22,597,519 (+)	NCBI		UU_Cfam_GSD_1.0

Slamf6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	6,587,657 - 6,598,479 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936740	155,268 - 165,536 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SLAMF6
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	3,426,868 - 3,465,553 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	3,453,370 - 3,463,901 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	2,483,320 - 2,522,363 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Slamf6
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624794	754,530 - 796,732 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in SLAMF6
610 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	hemolymphoid system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system
High
Medium	2	2		5					3
Low	7					1		2
Below cutoff	1	2	1		2	6	2	1

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_001928567	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021089571	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000022	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK230557	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK394425	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU179691	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBZA01000588	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01034034	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSSCT00000006995 ⟹ ENSSSCP00000006805

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	4	89,980,786 - 90,003,645 (+)	Ensembl

RefSeq Acc Id:

XM_001928567 ⟹ XP_001928602

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	4	89,980,612 - 90,004,222 (+)	NCBI

Sequence:

show sequence

GCGAAGTTCATTCTTCGGCTGCATGAACAAGAACCCGGATTCCGGTAACATCTTTCTGGCATCA
TTTTGCTCATAAAAAATAGATTAATAATAAAGTAAAACTATGACTGTTAGTATGAAGATGTTGC
CACGCCTCTGAGAAGAAGGAGGAAGTGTCAGAAAAAAAGCAGTTTCAGTTTATGAGAAATTGGC
AAGAACATTGACTGCCTTGAGGTCTCCAGCACCAATCTCCACTGCTAAGAGCATGATCTGGCTG
TTCCAGTCTCTCACCCTTGTCTTCTGCCTTGACCCAGGAAATACAGTTTCACAAACCAGCTCAA
CCCCACTGATTGTGAACGGGACCCTGGGGGAGTCAGTAACTCTACCCCTGAAGTTCCCTGAAGA
AGAGAAGATCATGTCCATCACCTGGCTTCACGATGGAAAATCTATCATCTTCATACGGCCAAAT
AAGGCACAAAGTCCACTAATACACGTAACTGATCCAAAACAGAGCAATCGATTGAACGTCACCA
AGTCCTACTCTCTGCAACTCAGCAACCTGACGATGGCAGACACAGGATCTTACACCGCCCAGAT
AACCACAACCTCCGTAGTGTTTTACAGTTATTATCTGAGGATCTTCAGACGGCTGGGGAACCTT
CAGGTTGTCACTCTCACTGAAAGGTCTAGGAATGAGACCTGTGTGATCCACCTGACCTGCTCCG
TGGAGGATCCAAATGATAACGTCTCATTCAGCTGGCAGGTCTCAGGAAGCATGCTTCCAAGTGA
AGCAAACCTCACTGTCTCCTGGGACCCCAAGAATTTCAGAGACGAGACCTACATGTGCATAGCT
GAGAATCCTGTCAGCAATGCCTCCTCCTCTGTCTCTGTCCAGAGCCTCTGCAAAGGTGTTATTA
ATGCAAAAAATGTACACCTGGACACCAGATGGATTATAATGGTGGTTCCTTTGATATGTATAGT
CATCTTTGCCTGCTTGTGTGTTCGGAGGAAAAAATTAGCAGATGTCTTTCATTTCCCTGCTCAG
CAAACCCAAGGAGCTGGTGCAGAGACCGTGAGGAACTTAGAATATGCTTCCTTCTCTTCTGGGA
ACACTGTCTATGCTCAGGTCACCCATGCAAATCAGGAAAGAGGAACCCTAACACCTTTGAAAAA
TAATGACTCCACCACAATTTACACTGAAGTTCATCAGTCTGGAGAGAAAGCCCTCTGAACCCAG
GCCAGCTGCCCTCCACAATGTCACGTAAGGTGCTAAAAGGCCTCCAAAGAATTCAGGAACGACA
CATCTTCTCCTGATCCCATGAGAAAGGACAGAGCTTGGTCTCTGCCTGGCAGCAGAATTTGAAT
ATCTAGGAGTATCGCTCCCACTCCTTCAGATTTGAACCTACTTACTGAGGTCAAATATGTAGGG
AATAACATCATTTCCAGCATATGACCCAGATAACATTTTCTAATCTGCTCCAGGACATACAGCA
GAAACCATGCCCAGATATTGACTTTCTCTTTGGTAACTCATCGAATGGAGTCACGATTGGCAGA
GAGATTACAATTCAGAAGACAACCACCTCTGTCCTTTTAGAAAGCAGCAGGATTGTGATTCTCC
TGGGAGAGAGTACTGTGTGTTGTTTACGTGTGTTTTCTCTGGAGTTAACCAGGCCCATGTTCAA
ATCCTCATACATCCTCGTGTGTCATTTACTAGACACGCCTCCTGGGACATGTTACTAACCTCTT
GGAGCTCTGGTCTCCTAGACTGAAAAAGGAGGGTAGTAGTACATCAGCCCTGTTATTCACACCG
GGAACCAAGGCTTCAACTTCTCTATAACCAAGCCCTTTGGACTCTACCTCCAACTAGTGGACCT
CTCCACTTTTCTGCACATCTTCAACCAAGTTGTATATACAGGCAGCATCCTCACAACCTGGACT
GCTACAATAAACGCCAAGCAACTCTCTACAACTTTTGCTCTTGGCTCCCTCCAATCAAGGCTCT
ACAATACAGCTAAAGTAATATTTTTAATATAAATCGGATCCTTGGAGTTCCTGTTGTGGCTCAG
AGGTAATGAACCTGACTAGTATCCATGAGGACACGGGTTCAATCCCTGGCCCTGATCAGTGGGT
CAGGGATCCAGTGCTACTGTGAGCTGTGGTGTAGGTTGCAGACGTGACTCAGATCCTGCATTGC
TGTGGCATAGGCTGGCAGTCACAGCTCCAATTCAACCCCTGGCCTGGGAGATTTCATACACCGT
GGGTGTGGCCCTAAAAAACAAAATTTAAAAAAAATTGAATCCTTCACTTGTCTGCTTAAAATTC
TGCAAGACTTCCCAGTACACTCAGATTAAAACTTGAGTCTACATAGTTCTGGAGGGTCTAGCCC
ATCTATCTCCAGCCCCAGCTAGTATCACTCCCCCCACCCTGCTTTTGTTTGTTTGTTTGTTTGT
TTGTTGTTTTAAGGGTTTTTTTTTGGGGGGGAGTTGTTTTTTGGACCATGCCTGGCATGGAAAA
GATCCTGGGCCAGAGATCAAACCAGTGCCAAAACAGTGACCCAAGTTACAGCAGTGGCCAAGCT
GGATCCTTAACCCAGGCCACAAGGAAACTCCACCCCCCACTATCCTTATTTAGACTCCCCAGTC
TCCTTTCAGCTCCCCTATTAGAGGAAATATTTTGCTATGTTAGGGTTATTTACGTCTTCCTCAA
GGCCCTTCTTTCTGCCTGTCCAGTTCCTATTCTTTAGGTCTCATCTTACATATGTCACCTTCTA
AGAGAGACCTTCCTAGACCTCTCTATCTGAAATGACTTTATCGTATGTCATTAAATATTTATTT
TTATTTGTTTAATGTCTCTTTCTCCTACTATACCGTAAGCTCTTTAGGAATAGAAAGCATGACA
ATTTTGTTTATCACTGTATCCCCAGCATCTAGCAGAGTATCTAACACATAGCGAATGTTCAGTA
ATTTTTTTTTTTTAATGGATACACCTTCGACATTTGGAAGTTCTTGGACCAGGGAGTGAATCTG
AGCCACAGCTGGGGCAACACTGGATCCTTTAACCCACTGTGCCAGGCTGGGGATGGAACCCGAG
CCCCCCTGCAACAACCTCAGCTGCTCGGATTCTTAAGCCACTGCACCACAGCAAGAACACCTCA
GTAAATATTTTTGATAAACAAATAAATAAATAAAATGTGTGTGTAATGGAGGGTTTTTTTTTTC
TTTTCTTTTTACAACCACACCAGCAACATAGGGAAGTTCCCAAGCTAAGGGTCACTGGATCCTC
AACCCACTGAGTGAGGCCAGGGATCTAACCTGAATCCTCATGGACACTATGGTGGGTTCTTAAC
CTACTGAGCCACAACAGGAAGTCCTTGAGAGTTAAGTAAAACACTTGGAATTAAGTAAACACTT
GGAGGAGTTCCCATCGTGGTGCAGCAGAAATGAATCCAACCAGTATACATGAGGATGCAGGTTG
GATCCCTGGCCTCGCTCTGTGAGTCAGGGATCTGGTATTGCATTGAGCTGTGGTGTAGGTTGCA
GACATGGCTTGGATCCACATGGCTTTGGCGTAGGCGGGCAGCTACAGCTCCGATTCGACCCCTA
TCCTGGGAACCTCCTGATGCCTCAGGTGTGGCCCTAAGAATAAGAAGAAAAAAGGAAAGTAAAG
AACTTGGACCCCTTAGCACAGTGCTTAGCACGTGAAAGAGCTCAGTGAATGTTAGCCATCATTG
TTGTTGTGTTCTCGTTGTTGTTATTATTATTAAATTATATTCTCTTGAA

hide sequence

RefSeq Acc Id:

XM_021089571 ⟹ XP_020945230

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	4	89,980,592 - 90,002,744 (+)	NCBI

Sequence:

show sequence

GCCTGCTGCCTGTGTTATTTGCGAAGTTCATTCTTCGGCTGCATGAACAAGAACCCGGATTCCG
GTAACATCTTTCTGGCATCATTTTGCTCATAAAAAATAGATTAATAATAAAGTAAAACTATGAC
TGTTAGTATGAAGATGTTGCCACGCCTCTGAGAAGAAGGAGGAAGTGTCAGAAAAAAAGCAGTT
TCAGTTTATGAGAAATTGGCAAGAACATTGACTGCCTTGAGGTCTCCAGCACCAATCTCCACTG
CTAAGAGCATGATCTGGCTGTTCCAGTCTCTCACCCTTGTCTTCTGCCTTGACCCAGGAAATAC
AGTTTCACAAACCAGCTCAACCCCACTGATTGTGAACGGGACCCTGGGGGAGTCAGTAACTCTA
CCCCTGAAGTTCCCTGAAGAAGAGAAGATCATGTCCATCACCTGGCTTCACGATGGAAAATCTA
TCATCTTCATACGGCCAAATAAGGCACAAAGTCCACTAATACACGTAACTGATCCAAAACAGAG
CAATCGATTGAACGTCACCAAGTCCTACTCTCTGCAACTCAGCAACCTGACGATGGCAGACACA
GGATCTTACACCGCCCAGATAACCACAACCTCCGTAGTGTTTTACAGTTATTATCTGAGGATCT
TCAGACGGCTGGGGAACCTTCAGGTTGTCACTCTCACTGAAAGGTCTAGGAATGAGACCTGTGT
GATCCACCTGACCTGCTCCGTGGAGGATCCAAATGATAACGTCTCATTCAGCTGGCAGGTCTCA
GGAAGCATGCTTCCAAGTGAAGCAAACCTCACTGTCTCCTGGGACCCCAAGAATTTCAGAGACG
AGACCTACATGTGCATAGCTGAGAATCCTGTCAGCAATGCCTCCTCCTCTGTCTCTGTCCAGAG
CCTCTGCAAAGGTGTTATTAATGCAAAAAATGTACACCTGGACACCAGATGGATTATAATGGTG
GTTCCTTTGATATGTATAGTCATCTTTGCCTGCTTGTGTGTTCGGAGGAAAAAATTAGCAGGTT
TCCTTTCTTCCTACTTGCTTCTTCTCCAAGATTCCAGAGACGTAGAGTCTGGGGCCTCCATAAG
ATGCTGTCTGGGAGTTCCCATCATGACTCAGCGATGTCTTTCATTTCCCTGCTCAGCAAACCCA
AGGAGCTGGTGCAGAGACCGTGAGGAACTTAGAATATGCTTCCTTCTCTTCTGGGAACACTGTC
TATGCTCAGGTCACCCATGCAAATCAGGAAAGAGGAACCCTAACACCTTTGAAAAATAATGACT
CCACCACAATTTACACTGAAGTTCATCAGTCTGGAGAGAAAGCCCTCTGAACCCAGGCCAGCTG
CCCTCCACAATGTCACGTAAGGTGCTAAAAGGCCTCCAAAGAATTCAGGAACGACACATCTTCT
CCTGATCCCATGAGAAAGGACAGAGCTTGGTCTCTGCCTGGCAGCAGAATTTGAATATCTAGGA
GTATCGCTCCCACTCCTTCAGATTTGAACCTACTTACTGAGGTCAAATATGTAGGGAATAACAT
CATTTCCAGCATATGACCCAGATAACATTTTCTAATCTGCTCCAGGACATACAGCAGAAACCAT
GCCCAGATATTGACTTTCTCTTTGGTAACTCATCGAATGGAGTCACGATTGGCAGAGAGATTAC
AATTCAGAAGACAACCACCTCTGTCCTTTTAGAAAGCAGCAGGATTGTGATTCTCCTGGGAGAG
AGTACTGTGTGTTGTTTACGTGTGTTTTCTCTGGAGTTAACCAGGCCCATGTTCAAATCCTCAT
ACATCCTCGTGTGTCATTTACTAGACACGCCTCCTGGGACATGTTACTAACCTCTTGGAGCTCT
GGTCTCCTAGACTGAAAAAGGAGGGTAGTAGTACATCAGCCCTGTTATTCACACCGGGAACCAA
GGCTTCAACTTCTCTATAACCAAGCCCTTTGGACTCTACCTCCAACTAGTGGACCTCTCCACTT
TTCTGCACATCTTCAACCAAGTTGTATATACAGGCAGCATCCTCACAACCTGGACTGCTACAAT
AAACGCCAAGCAACTCTCTACAACTTTTGCTCTTGGCTCCCTCCAATCAAGGCTCTACAATACA
GCTAAAGTAATATTTTTAATATAAATCGGATCCTTGGAGTTCCTGTTGTGGCTCAGAGGTAATG
AACCTGACTAGTATCCATGAGGACACGGGTTCAATCCCTGGCCCTGATCAGTGGGTCAGGGATC
CAGTGCTACTGTGAGCTGTGGTGTAGGTTGCAGACGTGACTCAGATCCTGCATTGCTGTGGCAT
AGGCTGGCAGTCACAGCTCCAATTCAACCCCTGGCCTGGGAGATTTCATACACCGTGGGTGTGG
CCCTAAAAAACAAAATTTAAAAAAAATTGAATCCT

hide sequence

Protein Sequences


Protein RefSeqs	XP_001928602	(Get FASTA)	NCBI Sequence Viewer
	XP_020945230	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000006805
	ENSSSCP00000006805.3
	ENSSSCP00005012697.1
	ENSSSCP00015029846.1
	ENSSSCP00025001041.1
	ENSSSCP00030019645.1
	ENSSSCP00035019380.1
	ENSSSCP00040021945.1
	ENSSSCP00045026743.1
	ENSSSCP00050007205.1
	ENSSSCP00055009781.1
	ENSSSCP00060043871.1
	ENSSSCP00065015470.1
	ENSSSCP00070045131.1
GenBank Protein	JAG69180	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_020945230 ⟸ XM_021089571

- Peptide Label:

isoform X1

- Sequence:

show sequence

MIWLFQSLTLVFCLDPGNTVSQTSSTPLIVNGTLGESVTLPLKFPEEEKIMSITWLHDGKSIIF
IRPNKAQSPLIHVTDPKQSNRLNVTKSYSLQLSNLTMADTGSYTAQITTTSVVFYSYYLRIFRR
LGNLQVVTLTERSRNETCVIHLTCSVEDPNDNVSFSWQVSGSMLPSEANLTVSWDPKNFRDETY
MCIAENPVSNASSSVSVQSLCKGVINAKNVHLDTRWIIMVVPLICIVIFACLCVRRKKLAGFLS
SYLLLLQDSRDVESGASIRCCLGVPIMTQRCLSFPCSANPRSWCRDREELRICFLLFWEHCLCS
GHPCKSGKRNPNTFEK

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RefSeq Acc Id:	XP_001928602 ⟸ XM_001928567
- Peptide Label:	isoform X2
- UniProtKB:	F1RJY4 (UniProtKB/TrEMBL), A0A0B8RT76 (UniProtKB/TrEMBL), A0A8D2C3U6 (UniProtKB/TrEMBL), A0A4X1VTE8 (UniProtKB/TrEMBL), A0A8D0PDC1 (UniProtKB/TrEMBL), A0A8D0IR63 (UniProtKB/TrEMBL)
- Sequence:	show sequence MIWLFQSLTLVFCLDPGNTVSQTSSTPLIVNGTLGESVTLPLKFPEEEKIMSITWLHDGKSIIF IRPNKAQSPLIHVTDPKQSNRLNVTKSYSLQLSNLTMADTGSYTAQITTTSVVFYSYYLRIFRR LGNLQVVTLTERSRNETCVIHLTCSVEDPNDNVSFSWQVSGSMLPSEANLTVSWDPKNFRDETY MCIAENPVSNASSSVSVQSLCKGVINAKNVHLDTRWIIMVVPLICIVIFACLCVRRKKLADVFH FPAQQTQGAGAETVRNLEYASFSSGNTVYAQVTHANQERGTLTPLKNNDSTTIYTEVHQSGEKA L hide sequence

RefSeq Acc Id:

ENSSSCP00000006805 ⟸ ENSSSCT00000006995

Protein Domains

Ig-like

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000006382	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00005013600	UniProtKB/TrEMBL
	ENSSSCG00015055830	UniProtKB/TrEMBL
	ENSSSCG00025002230	UniProtKB/TrEMBL
	ENSSSCG00030031314	UniProtKB/TrEMBL
	ENSSSCG00035036555	UniProtKB/TrEMBL
	ENSSSCG00040039457	UniProtKB/TrEMBL
	ENSSSCG00045022521	UniProtKB/TrEMBL
	ENSSSCG00050012955	UniProtKB/TrEMBL
	ENSSSCG00055006409	UniProtKB/TrEMBL
	ENSSSCG00060073875	UniProtKB/TrEMBL
	ENSSSCG00065027345	UniProtKB/TrEMBL
	ENSSSCG00070026579	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000006995	ENTREZGENE
	ENSSSCT00000006995.6	UniProtKB/TrEMBL
	ENSSSCT00005021208.1	UniProtKB/TrEMBL
	ENSSSCT00015074391.1	UniProtKB/TrEMBL
	ENSSSCT00025002877.1	UniProtKB/TrEMBL
	ENSSSCT00030043400.1	UniProtKB/TrEMBL
	ENSSSCT00035048451.1	UniProtKB/TrEMBL
	ENSSSCT00040052807.1	UniProtKB/TrEMBL
	ENSSSCT00045038471.1	UniProtKB/TrEMBL
	ENSSSCT00050017473.1	UniProtKB/TrEMBL
	ENSSSCT00055012416.1	UniProtKB/TrEMBL
	ENSSSCT00060100992.1	UniProtKB/TrEMBL
	ENSSSCT00065036829.1	UniProtKB/TrEMBL
	ENSSSCT00070053269.1	UniProtKB/TrEMBL
Gene3D-CATH	2.60.40.10	UniProtKB/TrEMBL
InterPro	Ig-like_dom	UniProtKB/TrEMBL
	Ig-like_dom_sf	UniProtKB/TrEMBL
	Ig-like_fold	UniProtKB/TrEMBL
	Ig_sub	UniProtKB/TrEMBL
	Ig_V-set	UniProtKB/TrEMBL
	Immunoglobulin	UniProtKB/TrEMBL
KEGG Report	ssc:100156912	UniProtKB/TrEMBL
NCBI Gene	SLAMF6	ENTREZGENE
PANTHER	SIGNALING LYMPHOCYTIC ACTIVATION MOLECULE	UniProtKB/TrEMBL
	SLAM FAMILY MEMBER 6	UniProtKB/TrEMBL
Pfam	PF00047	UniProtKB/TrEMBL
	V-set	UniProtKB/TrEMBL
PROSITE	IG_LIKE	UniProtKB/TrEMBL
SMART	SM00409	UniProtKB/TrEMBL
Superfamily-SCOP	SSF48726	UniProtKB/TrEMBL
UniProt	A0A0B8RT76	ENTREZGENE
	A0A4X1VTE8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D0IR63	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D0PDC1	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D2C3U6	ENTREZGENE, UniProtKB/TrEMBL
	F1RJY4	ENTREZGENE
UniProt Secondary	F1RJY4	UniProtKB/TrEMBL
VGNC ID	VGNC:92912	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar