H2BC2 (H2B clustered histone 2) - Rat Genome Database

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Gene: H2BC2 (H2B clustered histone 2) Sus scrofa
Analyze
Symbol: H2BC2
Name: H2B clustered histone 2
RGD ID: 14211155
Description: ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN antimicrobial humoral immune response mediated by antimicrobial peptide (ortholog); innate immune response in mucosa (ortholog); FOUND IN cytosol (ortholog); extracellular space (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: histone H2B type 1-A; LOC100152878
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1720,467,395 - 20,471,314 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2721,770,167 - 21,770,838 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
H2BC2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1720,467,395 - 20,471,314 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2721,770,167 - 21,770,838 (-)NCBISscrofa10.2Sscrofa10.2susScr3
H2BC6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38626,183,761 - 26,184,230 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl626,172,059 - 26,184,655 (+)EnsemblGRCh38hg38GRCh38
GRCh37626,183,989 - 26,184,458 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36626,292,003 - 26,292,437 (+)NCBINCBI36Build 36hg18NCBI36
Build 34626,292,002 - 26,292,437NCBI
Celera627,413,325 - 27,413,759 (+)NCBICelera
Cytogenetic Map6p22.2NCBI
HuRef626,127,029 - 26,127,463 (+)NCBIHuRef
CHM1_1626,186,226 - 26,186,660 (+)NCBICHM1_1
T2T-CHM13v2.0626,051,896 - 26,052,365 (+)NCBIT2T-CHM13v2.0
H2bc6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391323,767,653 - 23,805,091 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1323,767,653 - 23,805,107 (-)EnsemblGRCm39 Ensembl
GRCm381323,583,670 - 23,621,124 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1323,583,670 - 23,621,124 (-)EnsemblGRCm38mm10GRCm38
MGSCv371323,675,539 - 23,712,993 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361323,591,206 - 23,628,589 (-)NCBIMGSCv36mm8
Celera1323,815,585 - 23,852,605 (-)NCBICelera
Cytogenetic Map13A3.1NCBI
cM Map139.81NCBI
H2bc6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81741,948,813 - 41,949,276 (+)NCBIGRCr8
mRatBN7.21741,520,775 - 41,521,238 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.01743,764,654 - 43,765,101 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1744,737,950 - 44,738,330 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl1743,679,925 - 43,689,311 (-)EnsemblRnor6.0rn6Rnor6.0
Celera1741,151,671 - 41,152,146 (+)NCBICelera
Cytogenetic Map17p11NCBI
LOC100981885
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2540,826,684 - 40,831,937 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1636,828,603 - 36,833,894 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0626,017,776 - 26,019,904 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1626,679,314 - 26,679,824 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl626,679,372 - 26,679,752 (+)Ensemblpanpan1.1panPan2
H2BC6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13524,115,034 - 24,115,551 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3525,006,510 - 25,006,890 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3524,131,296 - 24,131,676 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3525,061,555 - 25,061,935 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3524,178,933 - 24,179,313 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3524,066,399 - 24,066,779 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3524,999,692 - 25,000,072 (-)EnsemblCanFam3.1canFam3CanFam3.1

Variants

.
Variants in H2BC2
144 total Variants

Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_021098415   ⟹   XP_020954074
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1720,467,395 - 20,471,314 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_020954074   ⟸   XM_021098415
- UniProtKB: A0A4X1VMT2 (UniProtKB/TrEMBL),   F2Z580 (UniProtKB/TrEMBL),   A0A8D0RHQ1 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
Histone H2A/H2B/H3


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000057021 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005036677 UniProtKB/TrEMBL
  ENSSSCG00015056405 UniProtKB/TrEMBL
  ENSSSCG00025021843 UniProtKB/TrEMBL
  ENSSSCG00030049296 UniProtKB/TrEMBL
  ENSSSCG00035078486 UniProtKB/TrEMBL
  ENSSSCG00040042592 UniProtKB/TrEMBL
  ENSSSCG00045007076 UniProtKB/TrEMBL
  ENSSSCG00050042388 UniProtKB/TrEMBL
  ENSSSCG00055027827 UniProtKB/TrEMBL
  ENSSSCG00060034611 UniProtKB/TrEMBL
  ENSSSCG00065045817 UniProtKB/TrEMBL
  ENSSSCG00070025036 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000001230 ENTREZGENE
  ENSSSCT00000001230.3 UniProtKB/TrEMBL
  ENSSSCT00005058567.1 UniProtKB/TrEMBL
  ENSSSCT00015075125.1 UniProtKB/TrEMBL
  ENSSSCT00025029711.1 UniProtKB/TrEMBL
  ENSSSCT00030068746.1 UniProtKB/TrEMBL
  ENSSSCT00035107091.1 UniProtKB/TrEMBL
  ENSSSCT00040056950.1 UniProtKB/TrEMBL
  ENSSSCT00045011717.1 UniProtKB/TrEMBL
  ENSSSCT00050057598.1 UniProtKB/TrEMBL
  ENSSSCT00055055044.1 UniProtKB/TrEMBL
  ENSSSCT00060046896.1 UniProtKB/TrEMBL
  ENSSSCT00065062672.1 UniProtKB/TrEMBL
  ENSSSCT00070050048.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.20.10 UniProtKB/TrEMBL
InterPro Histone-fold UniProtKB/TrEMBL
  Histone_H2A/H2B/H3 UniProtKB/TrEMBL
  Histone_H2B UniProtKB/TrEMBL
NCBI Gene LOC100152878 ENTREZGENE
PANTHER HISTONE H2B UniProtKB/TrEMBL
  HISTONE H2B TYPE 1-A UniProtKB/TrEMBL
Pfam Histone UniProtKB/TrEMBL
PRINTS HISTONEH2B UniProtKB/TrEMBL
PROSITE HISTONE_H2B UniProtKB/TrEMBL
SMART H2B UniProtKB/TrEMBL
Superfamily-SCOP Histone-fold UniProtKB/TrEMBL
UniProt A0A4X1VMT2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0RHQ1 ENTREZGENE, UniProtKB/TrEMBL
  F2Z580 ENTREZGENE
UniProt Secondary F2Z580 UniProtKB/TrEMBL
VGNC ID VGNC:109810 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-13 H2BC2  H2B clustered histone 2  LOC100152878  histone H2B type 1-A  Symbol and/or name change 19259463 PROVISIONAL