NCBP3 (nuclear cap binding subunit 3) - Rat Genome Database

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Gene: NCBP3 (nuclear cap binding subunit 3) Sus scrofa
Analyze
Symbol: NCBP3
Name: nuclear cap binding subunit 3
RGD ID: 14208440
Description: ENCODES a protein that exhibits mRNA binding (inferred); RNA 7-methylguanosine cap binding (inferred); RNA cap binding (inferred); INVOLVED IN defense response to virus (inferred); mRNA export from nucleus (inferred); snRNA export from nucleus (inferred); ASSOCIATED WITH Canavan disease (ortholog); FOUND IN nuclear cap binding complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: nuclear cap-binding protein subunit 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1249,882,087 - 49,918,744 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11249,882,076 - 49,918,759 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21251,813,971 - 51,850,668 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
NCBP3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1249,882,087 - 49,918,744 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11249,882,076 - 49,918,759 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21251,813,971 - 51,850,668 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NCBP3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38173,802,158 - 3,846,246 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl173,802,158 - 3,846,246 (-)EnsemblGRCh38hg38GRCh38
GRCh37173,705,452 - 3,749,540 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36173,661,566 - 3,675,071 (-)NCBINCBI36Build 36hg18NCBI36
Celera173,726,255 - 3,761,355 (-)NCBICelera
Cytogenetic Map17p13.2NCBI
HuRef173,600,385 - 3,639,782 (-)NCBIHuRef
CHM1_1173,719,371 - 3,757,796 (-)NCBICHM1_1
T2T-CHM13v2.0173,690,835 - 3,734,921 (-)NCBIT2T-CHM13v2.0
Ncbp3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391172,937,443 - 72,974,405 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1172,938,609 - 72,980,143 (+)EnsemblGRCm39 Ensembl
GRCm381173,047,867 - 73,083,579 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1173,047,783 - 73,089,317 (+)EnsemblGRCm38mm10GRCm38
MGSCv371172,861,369 - 72,897,081 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361172,864,075 - 72,896,411 (+)NCBIMGSCv36mm8
Celera1180,576,859 - 80,618,177 (+)NCBICelera
Cytogenetic Map11B4NCBI
cM Map1145.16NCBI
Ncbp3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81058,164,241 - 58,193,952 (+)NCBIGRCr8
mRatBN7.21057,665,716 - 57,695,432 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1057,665,716 - 57,695,432 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1062,326,321 - 62,356,017 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01061,814,795 - 61,844,493 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01057,313,872 - 57,343,580 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01059,613,398 - 59,643,111 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1059,613,398 - 59,643,111 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01059,352,867 - 59,382,579 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41059,937,507 - 59,967,324 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11059,951,131 - 59,980,889 (+)NCBI
Celera1056,790,025 - 56,819,735 (+)NCBICelera
Cytogenetic Map10q24NCBI
Ncbp3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546713,011,566 - 13,042,734 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546713,011,755 - 13,043,161 (+)NCBIChiLan1.0ChiLan1.0
NCBP3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21911,414,075 - 11,457,486 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11713,378,073 - 13,421,490 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0173,852,643 - 3,896,031 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1173,845,462 - 3,888,382 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl173,856,338 - 3,888,382 (-)Ensemblpanpan1.1panPan2
NCBP3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1947,597,282 - 47,635,725 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl947,605,728 - 47,635,689 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha946,762,018 - 46,797,645 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0948,445,165 - 48,480,778 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl948,445,595 - 48,480,756 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1947,222,675 - 47,258,280 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0947,511,648 - 47,547,169 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0947,568,057 - 47,603,597 (-)NCBIUU_Cfam_GSD_1.0
Ncbp3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560255,411,047 - 55,440,738 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936677462,868 - 488,212 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936677460,237 - 493,634 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NCBP3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1163,299,153 - 3,330,255 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl163,299,500 - 3,330,243 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605918,452,876 - 18,496,123 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ncbp3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247866,434,821 - 6,464,800 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247866,434,595 - 6,464,831 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in NCBP3
1214 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 10 4 3 5 2 23 2 3 3
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000019446   ⟹   ENSSSCP00000018929
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1249,882,087 - 49,918,744 (-)Ensembl
RefSeq Acc Id: XM_003131866   ⟹   XP_003131914
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11249,882,076 - 49,918,759 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_003131914   ⟸   XM_003131866
- UniProtKB: F1RGS3 (UniProtKB/TrEMBL),   A0A8D0WJB2 (UniProtKB/TrEMBL),   A0A8D1FFP9 (UniProtKB/TrEMBL),   A0A8D1WWU6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000018929   ⟸   ENSSSCT00000019446


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000017870 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005028674 UniProtKB/TrEMBL
  ENSSSCG00025023956 UniProtKB/TrEMBL
  ENSSSCG00030035257 UniProtKB/TrEMBL
  ENSSSCG00035067875 UniProtKB/TrEMBL
  ENSSSCG00040062287 UniProtKB/TrEMBL
  ENSSSCG00045028879 UniProtKB/TrEMBL
  ENSSSCG00050037343 UniProtKB/TrEMBL
  ENSSSCG00055030417 UniProtKB/TrEMBL
  ENSSSCG00060076742 UniProtKB/TrEMBL
  ENSSSCG00065043457 UniProtKB/TrEMBL
  ENSSSCG00070017222 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000019446 ENTREZGENE
  ENSSSCT00000019446.5 UniProtKB/TrEMBL
  ENSSSCT00005045610.1 UniProtKB/TrEMBL
  ENSSSCT00025032413.1 UniProtKB/TrEMBL
  ENSSSCT00030048845.1 UniProtKB/TrEMBL
  ENSSSCT00035091579.1 UniProtKB/TrEMBL
  ENSSSCT00040084804.1 UniProtKB/TrEMBL
  ENSSSCT00045049971.1 UniProtKB/TrEMBL
  ENSSSCT00045050363.1 UniProtKB/TrEMBL
  ENSSSCT00050050251.1 UniProtKB/TrEMBL
  ENSSSCT00055060546.1 UniProtKB/TrEMBL
  ENSSSCT00060105360.1 UniProtKB/TrEMBL
  ENSSSCT00065059446.1 UniProtKB/TrEMBL
  ENSSSCT00070033972.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
InterPro NCBP3 UniProtKB/TrEMBL
  Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
KEGG Report ssc:100519733 UniProtKB/TrEMBL
NCBI Gene NCBP3 ENTREZGENE
PANTHER NUCLEAR CAP-BINDING PROTEIN SUBUNIT 3 UniProtKB/TrEMBL
  PTHR16291 UniProtKB/TrEMBL
Pfam NCBP3 UniProtKB/TrEMBL
UniProt A0A480XBP8_PIG UniProtKB/TrEMBL
  A0A8D0WJB2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1AZ31_PIG UniProtKB/TrEMBL
  A0A8D1FFP9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1IHN1_PIG UniProtKB/TrEMBL
  A0A8D1WWU6 ENTREZGENE, UniProtKB/TrEMBL
  F1RGS3 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A4X1UED1 UniProtKB/TrEMBL
VGNC ID VGNC:90605 ENTREZGENE