CCDC124 (coiled-coil domain containing 124) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: CCDC124 (coiled-coil domain containing 124) Sus scrofa
Analyze
Symbol: CCDC124
Name: coiled-coil domain containing 124
RGD ID: 14196663
Description: ENCODES a protein that exhibits transcription coactivator activity (inferred); INVOLVED IN positive regulation of DNA-templated transcription (inferred); transcription by RNA polymerase II (inferred); ASSOCIATED WITH Megalencephaly-Polymicrogyria-Polydactyly-Hydrocephalus Syndrome 1 (ortholog); FOUND IN cytosol (inferred); midbody (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: coiled-coil domain-containing protein 124
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl259,821,561 - 59,829,403 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1259,821,557 - 59,831,561 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2259,390,287 - 59,400,283 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (IEA)
midbody  (IEA)
nucleus  (IEA)
plasma membrane  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:30032202  


Genomics

Comparative Map Data
CCDC124
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl259,821,561 - 59,829,403 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1259,821,557 - 59,831,561 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2259,390,287 - 59,400,283 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CCDC124
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381917,933,015 - 17,943,985 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1917,933,015 - 17,943,991 (+)EnsemblGRCh38hg38GRCh38
GRCh371918,043,824 - 18,054,794 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361917,906,905 - 17,915,783 (+)NCBINCBI36Build 36hg18NCBI36
Celera1917,945,548 - 17,956,518 (+)NCBICelera
Cytogenetic Map19p13.11NCBI
HuRef1917,608,966 - 17,619,929 (+)NCBIHuRef
CHM1_11918,043,548 - 18,054,513 (+)NCBICHM1_1
T2T-CHM13v2.01918,067,107 - 18,078,073 (+)NCBIT2T-CHM13v2.0
Ccdc124
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39871,320,870 - 71,326,134 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl871,320,871 - 71,326,579 (-)EnsemblGRCm39 Ensembl
GRCm38870,868,226 - 70,873,490 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl870,868,227 - 70,873,935 (-)EnsemblGRCm38mm10GRCm38
MGSCv37873,392,126 - 73,397,389 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36873,797,216 - 73,802,479 (-)NCBIMGSCv36mm8
Celera873,429,530 - 73,434,793 (-)NCBICelera
Cytogenetic Map8B3.3NCBI
cM Map834.33NCBI
Ccdc124
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81618,600,737 - 18,606,556 (+)NCBIGRCr8
mRatBN7.21618,566,745 - 18,572,564 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1618,566,745 - 18,572,564 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1618,608,927 - 18,614,749 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01619,741,605 - 19,747,427 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01618,661,868 - 18,667,690 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01620,317,446 - 20,323,265 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1620,317,446 - 20,323,265 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01620,174,990 - 20,180,809 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41619,074,584 - 19,080,343 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11619,075,011 - 19,080,084 (+)NCBI
Celera1618,759,366 - 18,765,185 (+)NCBICelera
Cytogenetic Map16p14NCBI
Ccdc124
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555243,349,653 - 3,353,122 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555243,349,444 - 3,355,748 (-)NCBIChiLan1.0ChiLan1.0
CCDC124
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22022,795,376 - 22,806,637 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11921,802,209 - 21,813,456 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01917,412,778 - 17,423,756 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11918,386,017 - 18,397,647 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1918,386,017 - 18,397,647 (+)Ensemblpanpan1.1panPan2
CCDC124
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12044,977,237 - 44,987,436 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2044,977,393 - 44,983,349 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2044,889,664 - 44,899,930 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02045,462,190 - 45,472,450 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2045,462,346 - 45,468,302 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12044,698,958 - 44,709,208 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02045,109,308 - 45,119,565 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02045,385,517 - 45,395,781 (-)NCBIUU_Cfam_GSD_1.0
Ccdc124
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118203,592,038 - 203,600,054 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365963,141,424 - 3,148,077 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365963,141,177 - 3,148,110 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCDC124
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1616,400,252 - 16,418,474 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl616,399,872 - 16,418,596 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660742,964,596 - 2,976,691 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ccdc124
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249081,422,408 - 1,427,392 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249081,422,392 - 1,427,392 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CCDC124
134 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1
Low 10 4 3 5 1 23 2 3 3
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000015177   ⟹   ENSSSCP00000014771
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl259,821,561 - 59,829,403 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000048131   ⟹   ENSSSCP00000041892
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl259,819,111 - 59,831,482 (-)Ensembl
RefSeq Acc Id: XM_005654904   ⟹   XP_005654961
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1259,821,557 - 59,831,561 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005654905   ⟹   XP_005654962
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1259,821,557 - 59,829,087 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_005654961   ⟸   XM_005654904
- UniProtKB: F1S924 (UniProtKB/TrEMBL),   A0A4X1UBM2 (UniProtKB/TrEMBL),   A0A8D0M5B9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005654962   ⟸   XM_005654905
- UniProtKB: F1S924 (UniProtKB/TrEMBL),   A0A4X1UBM2 (UniProtKB/TrEMBL),   A0A8D0M5B9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000014771   ⟸   ENSSSCT00000015177
RefSeq Acc Id: ENSSSCP00000041892   ⟸   ENSSSCT00000048131


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000013891 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005044966 UniProtKB/TrEMBL
  ENSSSCG00015053205 UniProtKB/TrEMBL
  ENSSSCG00025045245 UniProtKB/TrEMBL
  ENSSSCG00030056445 UniProtKB/TrEMBL
  ENSSSCG00035019703 UniProtKB/TrEMBL
  ENSSSCG00040050233 UniProtKB/TrEMBL
  ENSSSCG00045022868 UniProtKB/TrEMBL
  ENSSSCG00050072412 UniProtKB/TrEMBL
  ENSSSCG00055025895 UniProtKB/TrEMBL
  ENSSSCG00060029846 UniProtKB/TrEMBL
  ENSSSCG00065009625 UniProtKB/TrEMBL
  ENSSSCG00070015674 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000015177 ENTREZGENE
  ENSSSCT00000015177.4 UniProtKB/TrEMBL
  ENSSSCT00005072527.1 UniProtKB/TrEMBL
  ENSSSCT00005072535.1 UniProtKB/TrEMBL
  ENSSSCT00015070897.1 UniProtKB/TrEMBL
  ENSSSCT00015071023.1 UniProtKB/TrEMBL
  ENSSSCT00025061412.1 UniProtKB/TrEMBL
  ENSSSCT00025061485.1 UniProtKB/TrEMBL
  ENSSSCT00030078660.1 UniProtKB/TrEMBL
  ENSSSCT00030078670.1 UniProtKB/TrEMBL
  ENSSSCT00035025541.1 UniProtKB/TrEMBL
  ENSSSCT00035025546.1 UniProtKB/TrEMBL
  ENSSSCT00040067747.1 UniProtKB/TrEMBL
  ENSSSCT00040067791.1 UniProtKB/TrEMBL
  ENSSSCT00045039009.1 UniProtKB/TrEMBL
  ENSSSCT00045039048.1 UniProtKB/TrEMBL
  ENSSSCT00050098852.1 UniProtKB/TrEMBL
  ENSSSCT00050098857.1 UniProtKB/TrEMBL
  ENSSSCT00055051145.1 UniProtKB/TrEMBL
  ENSSSCT00055051228.1 UniProtKB/TrEMBL
  ENSSSCT00060040299.1 UniProtKB/TrEMBL
  ENSSSCT00060040302.1 UniProtKB/TrEMBL
  ENSSSCT00060040306.1 UniProtKB/TrEMBL
  ENSSSCT00065012808.1 UniProtKB/TrEMBL
  ENSSSCT00065012816.1 UniProtKB/TrEMBL
  ENSSSCT00070030757.1 UniProtKB/TrEMBL
  ENSSSCT00070030764.1 UniProtKB/TrEMBL
InterPro Ccdc124/Oxs1 UniProtKB/TrEMBL
KEGG Report ssc:100518956 UniProtKB/TrEMBL
NCBI Gene CCDC124 ENTREZGENE
PANTHER COILED-COIL DOMAIN-CONTAINING PROTEIN 124 UniProtKB/TrEMBL
  PTHR21680 UniProtKB/TrEMBL
Pfam Ccdc124 UniProtKB/TrEMBL
UniProt A0A4X1UBM2 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1UC85_PIG UniProtKB/TrEMBL
  A0A8D0M5B9 ENTREZGENE, UniProtKB/TrEMBL
  F1S924 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:86251 ENTREZGENE