ZMYND8 (zinc finger MYND-type containing 8) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: ZMYND8 (zinc finger MYND-type containing 8) Sus scrofa
Analyze
Symbol: ZMYND8
Name: zinc finger MYND-type containing 8
RGD ID: 14195282
Description: ENCODES a protein that exhibits kinase activity (inferred); lysine-acetylated histone binding (inferred); metal ion binding (inferred); INVOLVED IN modulation of excitatory postsynaptic potential (ortholog); positive regulation of dendritic spine development (ortholog); positive regulation of dendritic spine maintenance (ortholog); ASSOCIATED WITH focal epilepsy (ortholog); genetic disease (ortholog); intellectual disability (ortholog); FOUND IN dendritic shaft (ortholog); dendritic spine (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: RACK7
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1749,258,542 - 49,390,399 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11749,258,543 - 49,390,418 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21755,169,682 - 55,300,653 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:14681463   PMID:22301074  


Genomics

Comparative Map Data
ZMYND8
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1749,258,542 - 49,390,399 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11749,258,543 - 49,390,418 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21755,169,682 - 55,300,653 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZMYND8
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382047,209,214 - 47,356,699 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2047,209,214 - 47,356,889 (-)EnsemblGRCh38hg38GRCh38
GRCh372045,837,859 - 45,985,443 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362045,271,788 - 45,418,881 (-)NCBINCBI36Build 36hg18NCBI36
Build 342045,271,787 - 45,418,881NCBI
Celera2042,552,068 - 42,699,142 (-)NCBICelera
Cytogenetic Map20q13.12NCBI
HuRef2042,581,845 - 42,728,430 (-)NCBIHuRef
CHM1_12045,741,275 - 45,888,362 (-)NCBICHM1_1
T2T-CHM13v2.02048,947,314 - 49,094,980 (-)NCBIT2T-CHM13v2.0
Zmynd8
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392165,626,072 - 165,740,896 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2165,626,072 - 165,740,936 (-)EnsemblGRCm39 Ensembl
GRCm382165,784,152 - 165,898,981 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2165,784,152 - 165,899,016 (-)EnsemblGRCm38mm10GRCm38
MGSCv372165,609,654 - 165,710,188 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362165,476,506 - 165,588,155 (-)NCBIMGSCv36mm8
Celera2171,721,138 - 171,822,027 (-)NCBICelera
Cytogenetic Map2H3NCBI
cM Map285.98NCBI
Zmynd8
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83174,948,162 - 175,061,382 (-)NCBIGRCr8
mRatBN7.23154,528,917 - 154,629,532 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3154,529,043 - 154,628,463 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3158,334,100 - 158,431,277 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03166,833,091 - 166,930,269 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03164,574,727 - 164,671,904 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03162,480,766 - 162,594,145 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3162,480,804 - 162,581,610 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03168,658,022 - 168,771,422 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43156,860,459 - 156,957,748 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13156,766,803 - 156,865,056 (-)NCBI
Celera3153,120,868 - 153,217,849 (-)NCBICelera
Cytogenetic Map3q42NCBI
Zmynd8
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544510,229,902 - 10,363,350 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544510,226,031 - 10,361,371 (+)NCBIChiLan1.0ChiLan1.0
ZMYND8
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22152,943,925 - 53,104,459 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12052,937,030 - 53,097,569 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02043,540,819 - 43,701,322 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12044,624,487 - 44,784,920 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2044,624,487 - 44,772,032 (-)Ensemblpanpan1.1panPan2
ZMYND8
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12434,322,364 - 34,466,044 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2434,321,570 - 34,485,544 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2433,781,364 - 33,924,600 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02435,030,998 - 35,174,588 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2435,032,085 - 35,157,509 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12434,286,297 - 34,429,942 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02434,404,299 - 34,548,003 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02434,944,918 - 35,088,181 (-)NCBIUU_Cfam_GSD_1.0
Zmynd8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640190,662,525 - 190,760,665 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365146,116,676 - 6,212,996 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365146,116,789 - 6,214,383 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZMYND8
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1216,547,144 - 16,696,729 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl216,622,702 - 16,696,878 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605065,181,903 - 65,331,185 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zmynd8
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247907,493,066 - 7,611,485 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247907,473,739 - 7,611,612 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ZMYND8
5267 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 2 2 3 5 17 3 1
Low 8 2 2 6 2 2
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000008158   ⟹   ENSSSCP00000007942
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1749,258,551 - 49,381,369 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000058309   ⟹   ENSSSCP00000059472
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1749,320,614 - 49,381,262 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000067612   ⟹   ENSSSCP00000065264
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1749,258,553 - 49,389,287 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000070691   ⟹   ENSSSCP00000070432
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1749,258,553 - 49,382,364 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000077293   ⟹   ENSSSCP00000073992
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1749,258,545 - 49,390,210 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000077585   ⟹   ENSSSCP00000068459
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1749,258,801 - 49,390,325 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000078251   ⟹   ENSSSCP00000059688
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1749,258,551 - 49,389,450 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000081568   ⟹   ENSSSCP00000066205
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1749,258,553 - 49,389,287 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000082391   ⟹   ENSSSCP00000066315
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1749,258,560 - 49,390,399 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000086295   ⟹   ENSSSCP00000061205
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1749,258,542 - 49,389,900 (-)Ensembl
RefSeq Acc Id: XM_021078039   ⟹   XP_020933698
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11749,258,543 - 49,390,418 (-)NCBI
Sequence:
RefSeq Acc Id: XP_020933698   ⟸   XM_021078039
- UniProtKB: A0A480F0Z2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000059688   ⟸   ENSSSCT00000078251
RefSeq Acc Id: ENSSSCP00000059472   ⟸   ENSSSCT00000058309
RefSeq Acc Id: ENSSSCP00000070432   ⟸   ENSSSCT00000070691
RefSeq Acc Id: ENSSSCP00000061205   ⟸   ENSSSCT00000086295
RefSeq Acc Id: ENSSSCP00000066205   ⟸   ENSSSCT00000081568
RefSeq Acc Id: ENSSSCP00000065264   ⟸   ENSSSCT00000067612
RefSeq Acc Id: ENSSSCP00000073992   ⟸   ENSSSCT00000077293
RefSeq Acc Id: ENSSSCP00000068459   ⟸   ENSSSCT00000077585
RefSeq Acc Id: ENSSSCP00000007942   ⟸   ENSSSCT00000008158
RefSeq Acc Id: ENSSSCP00000066315   ⟸   ENSSSCT00000082391
Protein Domains
Bromo   MYND-type   PHD-type   PWWP


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000007454 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025008616 UniProtKB/TrEMBL
  ENSSSCG00030000721 UniProtKB/TrEMBL
  ENSSSCG00035078612 UniProtKB/TrEMBL
  ENSSSCG00040016797 UniProtKB/TrEMBL
  ENSSSCG00045016090 UniProtKB/TrEMBL
  ENSSSCG00055016857 UniProtKB/TrEMBL
  ENSSSCG00065032519 UniProtKB/TrEMBL
  ENSSSCG00070014876 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000008158.5 UniProtKB/TrEMBL
  ENSSSCT00000077293.2 UniProtKB/TrEMBL
  ENSSSCT00000077585.2 UniProtKB/TrEMBL
  ENSSSCT00000078251.2 UniProtKB/TrEMBL
  ENSSSCT00000082391 ENTREZGENE
  ENSSSCT00000082391.2 UniProtKB/TrEMBL
  ENSSSCT00000086295.2 UniProtKB/TrEMBL
  ENSSSCT00025011604.1 UniProtKB/TrEMBL
  ENSSSCT00025011624.1 UniProtKB/TrEMBL
  ENSSSCT00025011689.1 UniProtKB/TrEMBL
  ENSSSCT00025011909.1 UniProtKB/TrEMBL
  ENSSSCT00025011959.1 UniProtKB/TrEMBL
  ENSSSCT00030001061.1 UniProtKB/TrEMBL
  ENSSSCT00030001082.1 UniProtKB/TrEMBL
  ENSSSCT00030001110.1 UniProtKB/TrEMBL
  ENSSSCT00030001144.1 UniProtKB/TrEMBL
  ENSSSCT00030001205.1 UniProtKB/TrEMBL
  ENSSSCT00030001233.1 UniProtKB/TrEMBL
  ENSSSCT00030001308.1 UniProtKB/TrEMBL
  ENSSSCT00030001317.1 UniProtKB/TrEMBL
  ENSSSCT00030001358.1 UniProtKB/TrEMBL
  ENSSSCT00030001378.1 UniProtKB/TrEMBL
  ENSSSCT00035107471.1 UniProtKB/TrEMBL
  ENSSSCT00035107518.1 UniProtKB/TrEMBL
  ENSSSCT00035107603.1 UniProtKB/TrEMBL
  ENSSSCT00035107665.1 UniProtKB/TrEMBL
  ENSSSCT00035107754.1 UniProtKB/TrEMBL
  ENSSSCT00035107854.1 UniProtKB/TrEMBL
  ENSSSCT00035107966.1 UniProtKB/TrEMBL
  ENSSSCT00035108016.1 UniProtKB/TrEMBL
  ENSSSCT00035108049.1 UniProtKB/TrEMBL
  ENSSSCT00035108093.1 UniProtKB/TrEMBL
  ENSSSCT00040022712.1 UniProtKB/TrEMBL
  ENSSSCT00040022832.1 UniProtKB/TrEMBL
  ENSSSCT00040022893.1 UniProtKB/TrEMBL
  ENSSSCT00040022923.1 UniProtKB/TrEMBL
  ENSSSCT00040022941.1 UniProtKB/TrEMBL
  ENSSSCT00040022965.1 UniProtKB/TrEMBL
  ENSSSCT00040023007.1 UniProtKB/TrEMBL
  ENSSSCT00040023041.1 UniProtKB/TrEMBL
  ENSSSCT00040023045.1 UniProtKB/TrEMBL
  ENSSSCT00040023063.1 UniProtKB/TrEMBL
  ENSSSCT00045027471.1 UniProtKB/TrEMBL
  ENSSSCT00045027615.1 UniProtKB/TrEMBL
  ENSSSCT00045027752.1 UniProtKB/TrEMBL
  ENSSSCT00045027939.1 UniProtKB/TrEMBL
  ENSSSCT00045028114.1 UniProtKB/TrEMBL
  ENSSSCT00045028253.1 UniProtKB/TrEMBL
  ENSSSCT00045028407.1 UniProtKB/TrEMBL
  ENSSSCT00045028543.1 UniProtKB/TrEMBL
  ENSSSCT00045028641.1 UniProtKB/TrEMBL
  ENSSSCT00045028750.1 UniProtKB/TrEMBL
  ENSSSCT00055034965.1 UniProtKB/TrEMBL
  ENSSSCT00065044242.1 UniProtKB/TrEMBL
  ENSSSCT00070030885.1 UniProtKB/TrEMBL
  ENSSSCT00070030893.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.920.10 UniProtKB/TrEMBL
  2.30.30.140 UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/TrEMBL
  6.10.140.2220 UniProtKB/TrEMBL
InterPro Bromodomain UniProtKB/TrEMBL
  Bromodomain-like_sf UniProtKB/TrEMBL
  PRKCBP1_PHD UniProtKB/TrEMBL
  PWWP_dom UniProtKB/TrEMBL
  RACK7_Bromo_dom UniProtKB/TrEMBL
  Zinc_finger_PHD-type_CS UniProtKB/TrEMBL
  ZMYND8 UniProtKB/TrEMBL
  Znf_FYVE_PHD UniProtKB/TrEMBL
  Znf_MYND UniProtKB/TrEMBL
  Znf_PHD UniProtKB/TrEMBL
  Znf_PHD-finger UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
NCBI Gene ZMYND8 ENTREZGENE
PANTHER PROTEIN KINASE C-BINDING PROTEIN 1 UniProtKB/TrEMBL
  PROTEIN KINASE C-BINDING PROTEIN 1 UniProtKB/TrEMBL
Pfam Bromodomain UniProtKB/TrEMBL
  DUF3544 UniProtKB/TrEMBL
  PHD UniProtKB/TrEMBL
  PWWP UniProtKB/TrEMBL
PRINTS BROMODOMAIN UniProtKB/TrEMBL
PROSITE BROMODOMAIN_2 UniProtKB/TrEMBL
  PWWP UniProtKB/TrEMBL
  ZF_MYND_1 UniProtKB/TrEMBL
  ZF_MYND_2 UniProtKB/TrEMBL
  ZF_PHD_1 UniProtKB/TrEMBL
  ZF_PHD_2 UniProtKB/TrEMBL
SMART BROMO UniProtKB/TrEMBL
  PHD UniProtKB/TrEMBL
  PWWP UniProtKB/TrEMBL
Superfamily-SCOP HIT/MYND zinc finger-like UniProtKB/TrEMBL
  SSF47370 UniProtKB/TrEMBL
  SSF57903 UniProtKB/TrEMBL
  Tudor/PWWP/MBT UniProtKB/TrEMBL
UniProt A0A480F0Z2 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1UA38_PIG UniProtKB/TrEMBL
  A0A4X1UBV7_PIG UniProtKB/TrEMBL
  A0A5G2Q6Q2_PIG UniProtKB/TrEMBL
  A0A5G2QA26_PIG UniProtKB/TrEMBL
  A0A5G2R6T9_PIG UniProtKB/TrEMBL
  A0A5G2RAD3_PIG UniProtKB/TrEMBL
  A0A5G2RCR9_PIG UniProtKB/TrEMBL
  A0A8D0QPU9_PIG UniProtKB/TrEMBL
  A0A8D0QQ50_PIG UniProtKB/TrEMBL
  A0A8D0QQ59_PIG UniProtKB/TrEMBL
  A0A8D0QYN5_PIG UniProtKB/TrEMBL
  A0A8D0V4L6_PIG UniProtKB/TrEMBL
  A0A8D0V4L9_PIG UniProtKB/TrEMBL
  A0A8D0V4Q7_PIG UniProtKB/TrEMBL
  A0A8D0V4R7_PIG UniProtKB/TrEMBL
  A0A8D0V4S5_PIG UniProtKB/TrEMBL
  A0A8D0V4U2_PIG UniProtKB/TrEMBL
  A0A8D1BF10_PIG UniProtKB/TrEMBL
  A0A8D1BID2_PIG UniProtKB/TrEMBL
  A0A8D1BME3_PIG UniProtKB/TrEMBL
  A0A8D1D629_PIG UniProtKB/TrEMBL
  A0A8D1DME3_PIG UniProtKB/TrEMBL
  A0A8D1DMX2_PIG UniProtKB/TrEMBL
  A0A8D1DP10_PIG UniProtKB/TrEMBL
  A0A8D1DP83_PIG UniProtKB/TrEMBL
  A0A8D1DPB3_PIG UniProtKB/TrEMBL
  A0A8D1DPU1_PIG UniProtKB/TrEMBL
  A0A8D1HHJ7_PIG UniProtKB/TrEMBL
  A0A8D1HI77_PIG UniProtKB/TrEMBL
  A0A8D1HK64_PIG UniProtKB/TrEMBL
  A0A8D1HN39_PIG UniProtKB/TrEMBL
  F1SBF4_PIG UniProtKB/TrEMBL
VGNC ID VGNC:108744 ENTREZGENE