TAGLN (transgelin) - Rat Genome Database

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Gene: TAGLN (transgelin) Sus scrofa
Analyze
Symbol: TAGLN
Name: transgelin
RGD ID: 14188176
Description: ENCODES a protein that exhibits actin filament binding (inferred); INVOLVED IN cellular response to platelet-derived growth factor stimulus (ortholog); cytoskeleton organization (ortholog); PARTICIPATES IN platelet-derived growth factor signaling pathway; ASSOCIATED WITH aortic dissection (ortholog); Carotid Artery Injuries (ortholog); CD3epsilon deficiency (ortholog); FOUND IN actin cytoskeleton (inferred); cytoplasm (inferred)
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: SM22A; smooth muscle protein 22-alpha
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl944,560,785 - 44,567,385 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1944,561,756 - 44,567,385 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2949,631,082 - 49,636,704 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:14681463   PMID:15679890   PMID:17145712   PMID:22301074  


Genomics

Comparative Map Data
TAGLN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl944,560,785 - 44,567,385 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1944,561,756 - 44,567,385 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2949,631,082 - 49,636,704 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TAGLN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811117,199,294 - 117,207,465 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11117,199,370 - 117,207,464 (+)EnsemblGRCh38hg38GRCh38
GRCh3711117,070,010 - 117,078,181 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3611116,575,250 - 116,580,718 (+)NCBINCBI36Build 36hg18NCBI36
Build 3411116,575,249 - 116,580,717NCBI
Celera11114,227,663 - 114,233,128 (+)NCBICelera
Cytogenetic Map11q23.3NCBI
HuRef11113,002,838 - 113,008,303 (+)NCBIHuRef
CHM1_111116,954,875 - 116,960,340 (+)NCBICHM1_1
T2T-CHM13v2.011117,214,594 - 117,222,762 (+)NCBIT2T-CHM13v2.0
Tagln
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39945,840,926 - 45,847,356 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl945,840,917 - 45,847,356 (-)EnsemblGRCm39 Ensembl
GRCm38945,929,628 - 45,936,058 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl945,929,619 - 45,936,058 (-)EnsemblGRCm38mm10GRCm38
MGSCv37945,737,711 - 45,744,141 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36945,680,623 - 45,686,893 (-)NCBIMGSCv36mm8
Celera943,212,780 - 43,219,212 (-)NCBICelera
Cytogenetic Map9A5.2NCBI
cM Map925.36NCBI
Tagln
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8855,121,647 - 55,127,121 (-)NCBIGRCr8
mRatBN7.2846,224,939 - 46,230,413 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl846,222,472 - 46,230,668 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx851,725,392 - 51,730,788 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0850,004,159 - 50,009,555 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0847,868,429 - 47,873,827 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0850,222,895 - 50,228,369 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl850,222,896 - 50,231,357 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0848,847,354 - 48,853,081 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4848,902,208 - 48,907,682 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1848,910,973 - 48,916,459 (-)NCBI
Celera845,807,491 - 45,812,962 (-)NCBICelera
Cytogenetic Map8q22NCBI
Tagln
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541218,523,469 - 18,529,285 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541218,523,469 - 18,529,285 (+)NCBIChiLan1.0ChiLan1.0
TAGLN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29117,898,850 - 117,904,387 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111119,004,900 - 119,010,407 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011112,033,257 - 112,038,749 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111115,966,516 - 115,972,129 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11115,966,516 - 115,972,129 (+)Ensemblpanpan1.1panPan2
TAGLN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1516,390,259 - 16,395,471 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl516,390,573 - 16,397,207 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha516,442,731 - 16,447,933 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0516,334,629 - 16,339,831 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1516,472,895 - 16,478,074 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0516,375,367 - 16,380,560 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0516,417,555 - 16,422,762 (-)NCBIUU_Cfam_GSD_1.0
Tagln
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494799,524,359 - 99,529,792 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365422,445,659 - 2,451,216 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365422,445,825 - 2,451,216 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TAGLN
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11108,570,342 - 108,575,789 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1108,574,007 - 108,575,348 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604317,478,701 - 17,484,300 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tagln
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478412,647,071 - 12,663,863 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478412,653,591 - 12,659,373 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TAGLN
215 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 10 1 3 3
Low 3 3 2 2 22 2 1
Below cutoff 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001244150 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005667370 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005667371 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000070 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF053629 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK231706 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK231867 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK234135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK236759 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK238084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK345464 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK393811 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK393849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK396609 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK397718 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK397931 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK398562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK398814 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK399019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK400885 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY610393 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU633260 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GFLN01031806 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSSSCT00000042087   ⟹   ENSSSCP00000034673
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl944,560,785 - 44,567,356 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000055649   ⟹   ENSSSCP00000049288
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl944,564,666 - 44,567,385 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000104351   ⟹   ENSSSCP00000077063
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl944,565,104 - 44,567,385 (+)Ensembl
RefSeq Acc Id: NM_001244150   ⟹   NP_001231079
RefSeq Status: VALIDATED
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1944,561,760 - 44,567,385 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005667370   ⟹   XP_005667427
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1944,563,910 - 44,567,385 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005667371   ⟹   XP_005667428
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1944,561,756 - 44,567,380 (+)NCBI
Sequence:
RefSeq Acc Id: XP_005667428   ⟸   XM_005667371
- Peptide Label: isoform X2
- UniProtKB: A0A8W4FCD3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001231079   ⟸   NM_001244150
- UniProtKB: A0A4X1SX44 (UniProtKB/TrEMBL),   A0A8W4FCD3 (UniProtKB/TrEMBL),   A0A8D0Q335 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005667427   ⟸   XM_005667370
- Peptide Label: isoform X1
- UniProtKB: A0A4X1SX44 (UniProtKB/TrEMBL),   A0A8W4FCD3 (UniProtKB/TrEMBL),   A0A8D0Q335 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000049288   ⟸   ENSSSCT00000055649
RefSeq Acc Id: ENSSSCP00000034673   ⟸   ENSSSCT00000042087
RefSeq Acc Id: ENSSSCP00000077063   ⟸   ENSSSCT00000104351
Protein Domains
Calponin-homology (CH)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000015073 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005032034 UniProtKB/TrEMBL
  ENSSSCG00015075747 UniProtKB/TrEMBL
  ENSSSCG00025007163 UniProtKB/TrEMBL
  ENSSSCG00030062896 UniProtKB/TrEMBL
  ENSSSCG00035027272 UniProtKB/TrEMBL
  ENSSSCG00040049477 UniProtKB/TrEMBL
  ENSSSCG00045015968 UniProtKB/TrEMBL
  ENSSSCG00050068349 UniProtKB/TrEMBL
  ENSSSCG00055015026 UniProtKB/TrEMBL
  ENSSSCG00060017016 UniProtKB/TrEMBL
  ENSSSCG00065010496 UniProtKB/TrEMBL
  ENSSSCG00070004842 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000042087.3 UniProtKB/TrEMBL
  ENSSSCT00000055649.3 UniProtKB/TrEMBL
  ENSSSCT00000104351 ENTREZGENE
  ENSSSCT00000104351.1 UniProtKB/TrEMBL
  ENSSSCT00005051222.1 UniProtKB/TrEMBL
  ENSSSCT00005051237.1 UniProtKB/TrEMBL
  ENSSSCT00015102062.1 UniProtKB/TrEMBL
  ENSSSCT00015102100.1 UniProtKB/TrEMBL
  ENSSSCT00015102261.1 UniProtKB/TrEMBL
  ENSSSCT00015102346.1 UniProtKB/TrEMBL
  ENSSSCT00015102410.1 UniProtKB/TrEMBL
  ENSSSCT00015102480.1 UniProtKB/TrEMBL
  ENSSSCT00025009504.1 UniProtKB/TrEMBL
  ENSSSCT00025009515.1 UniProtKB/TrEMBL
  ENSSSCT00030088029.1 UniProtKB/TrEMBL
  ENSSSCT00035036053.1 UniProtKB/TrEMBL
  ENSSSCT00040066749.1 UniProtKB/TrEMBL
  ENSSSCT00045027162.1 UniProtKB/TrEMBL
  ENSSSCT00045027223.1 UniProtKB/TrEMBL
  ENSSSCT00045027266.1 UniProtKB/TrEMBL
  ENSSSCT00045027302.1 UniProtKB/TrEMBL
  ENSSSCT00050093274.1 UniProtKB/TrEMBL
  ENSSSCT00050093276.1 UniProtKB/TrEMBL
  ENSSSCT00055029611.1 UniProtKB/TrEMBL
  ENSSSCT00055029672.1 UniProtKB/TrEMBL
  ENSSSCT00055029716.1 UniProtKB/TrEMBL
  ENSSSCT00055029760.1 UniProtKB/TrEMBL
  ENSSSCT00060022734.1 UniProtKB/TrEMBL
  ENSSSCT00060022747.1 UniProtKB/TrEMBL
  ENSSSCT00060022755.1 UniProtKB/TrEMBL
  ENSSSCT00065013952.1 UniProtKB/TrEMBL
  ENSSSCT00070009140.1 UniProtKB/TrEMBL
  ENSSSCT00070009152.1 UniProtKB/TrEMBL
  ENSSSCT00070009159.1 UniProtKB/TrEMBL
  ENSSSCT00070009171.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.418.10 UniProtKB/TrEMBL
InterPro Calponin_repeat UniProtKB/TrEMBL
  CH-domain UniProtKB/TrEMBL
  CH_dom_sf UniProtKB/TrEMBL
  SM22_calponin UniProtKB/TrEMBL
KEGG Report ssc:397021 UniProtKB/TrEMBL
NCBI Gene TAGLN ENTREZGENE
PANTHER CALPONIN UniProtKB/TrEMBL
  TRANSGELIN UniProtKB/TrEMBL
Pfam Calponin UniProtKB/TrEMBL
  PF00307 UniProtKB/TrEMBL
PRINTS SM22CALPONIN UniProtKB/TrEMBL
  TRANSGELIN UniProtKB/TrEMBL
PROSITE CALPONIN_1 UniProtKB/TrEMBL
  CALPONIN_2 UniProtKB/TrEMBL
  PS50021 UniProtKB/TrEMBL
SMART SM00033 UniProtKB/TrEMBL
Superfamily-SCOP SSF47576 UniProtKB/TrEMBL
UniProt A0A286ZT82_PIG UniProtKB/TrEMBL
  A0A4X1SX44 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1SYU3_PIG UniProtKB/TrEMBL
  A0A8D0K2G7_PIG UniProtKB/TrEMBL
  A0A8D0Q335 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0UD77_PIG UniProtKB/TrEMBL
  A0A8D1QVP3_PIG UniProtKB/TrEMBL
  A0A8W4FCD3 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A287AZK2 UniProtKB/TrEMBL
VGNC ID VGNC:93730 ENTREZGENE