| Gene: LRRC66 (leucine rich repeat containing 66) Sus scrofa |
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Analyze |
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| Symbol: |
LRRC66 |
| Name: |
leucine rich repeat containing 66 |
| RGD ID: |
14181091 |
| Description: |
FOUND IN extracellular matrix (inferred); extracellular space (inferred); membrane (inferred) |
| Type: |
protein-coding
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| RefSeq Status: |
MODEL |
| Previously known as: |
leucine-rich repeat-containing protein 66 |
| RGD Orthologs |
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| Alliance Orthologs |
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| More Info |
more info ...
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| More Info |
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| Latest Assembly: |
Sscrofa11.1 - Pig Sscrofa11.1 Assembly |
| Position: |
| Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
Sscrofa11.1 Ensembl | 8 | 39,106,912 - 39,148,747 (-) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 8 | 39,104,727 - 39,127,021 (-) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 8 | 41,282,878 - 41,305,693 (-) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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| JBrowse: |
View Region in Genome Browser (JBrowse)
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| Model |
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References
Additional References at PubMed
Genomics
Comparative Map Data
LRRC66
(Sus scrofa - pig) |
| Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
Sscrofa11.1 Ensembl | 8 | 39,106,912 - 39,148,747 (-) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 8 | 39,104,727 - 39,127,021 (-) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 8 | 41,282,878 - 41,305,693 (-) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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LRRC66
(Homo sapiens - human) |
| Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
GRCh38 | 4 | 51,993,652 - 52,020,363 (-) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 4 | 51,993,652 - 52,020,363 (-) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 4 | 52,859,818 - 52,886,529 (-) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 4 | 52,554,621 - 52,581,234 (-) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Celera | 4 | 50,354,945 - 50,381,556 (-) | NCBI | | Celera | | | Cytogenetic Map | 4 | q12 | NCBI | | | | | HuRef | 4 | 48,801,374 - 48,827,987 (-) | NCBI | | HuRef | | | CHM1_1 | 4 | 52,895,473 - 52,922,085 (-) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 4 | 55,479,597 - 55,506,301 (-) | NCBI | | T2T-CHM13v2.0 | | |
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Lrrc66
(Mus musculus - house mouse) |
| Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
|---|
GRCm39 | 5 | 73,763,985 - 73,789,771 (-) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 5 | 73,763,985 - 73,789,869 (-) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 5 | 73,606,642 - 73,632,421 (-) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 5 | 73,606,642 - 73,632,526 (-) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 5 | 73,997,881 - 74,023,660 (-) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 5 | 73,885,777 - 73,911,556 (-) | NCBI | | MGSCv36 | mm8 | | Celera | 5 | 70,863,078 - 70,888,819 (-) | NCBI | | Celera | | | Cytogenetic Map | 5 | C3.3 | NCBI | | | | | cM Map | 5 | 38.89 | NCBI | | | | |
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Lrrc66
(Rattus norvegicus - Norway rat) |
| Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
GRCr8 | 14 | 34,932,814 - 34,959,046 (+) | NCBI | | GRCr8 | | | mRatBN7.2 | 14 | 34,578,934 - 34,604,977 (+) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 14 | 34,581,240 - 34,604,541 (+) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 14 | 34,941,187 - 34,964,820 (+) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 14 | 36,248,800 - 36,272,433 (+) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 14 | 34,734,257 - 34,757,894 (+) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 14 | 37,128,715 - 37,153,890 (+) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 14 | 37,130,743 - 37,153,898 (+) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 14 | 36,951,604 - 36,976,796 (+) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 14 | 36,977,618 - 37,001,071 (+) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | RGSC_v3.1 | 14 | 36,980,052 - 37,003,506 (+) | NCBI | | | | | Celera | 14 | 33,843,871 - 33,866,826 (+) | NCBI | | Celera | | | Cytogenetic Map | 14 | p11 | NCBI | | | | |
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Lrrc66
(Chinchilla lanigera - long-tailed chinchilla) |
| Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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ChiLan1.0 | NW_004955447 | 18,493,752 - 18,497,789 (+) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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LRRC66
(Pan paniscus - bonobo/pygmy chimpanzee) |
| Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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NHGRI_mPanPan1-v2 | 3 | 77,796,528 - 77,822,311 (+) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 4 | 78,000,475 - 78,026,422 (+) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 4 | 71,943,241 - 71,968,520 (+) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 4 | 78,497,523 - 78,521,457 (+) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 4 | 78,497,523 - 78,521,445 (+) | Ensembl | panpan1.1 | | panPan2 | |
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LRRC66
(Canis lupus familiaris - dog) |
| Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
CanFam3.1 | 13 | 44,943,556 - 44,969,350 (-) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 13 | 44,942,441 - 44,966,861 (-) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 13 | 44,893,538 - 44,922,231 (-) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 13 | 45,551,987 - 45,577,717 (-) | NCBI | | ROS_Cfam_1.0 | | | UMICH_Zoey_3.1 | 13 | 45,217,572 - 45,246,126 (-) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 13 | 44,752,598 - 44,781,229 (-) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 13 | 45,632,593 - 45,658,381 (-) | NCBI | | UU_Cfam_GSD_1.0 | | |
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Lrrc66
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
| Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
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HiC_Itri_2 | NW_024405285 | 31,150,170 - 31,187,917 (+) | NCBI | | HiC_Itri_2 | | | SpeTri2.0 Ensembl | NW_004936482 | 15,112,877 - 15,148,006 (-) | Ensembl | SpeTri2.0 | SpeTri2.0 Ensembl | | | SpeTri2.0 | NW_004936482 | 15,112,189 - 15,148,015 (-) | NCBI | SpeTri2.0 | SpeTri2.0 | | SpeTri2.0 |
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LRRC66
(Chlorocebus sabaeus - green monkey) |
| Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
|---|
ChlSab1.1 | 7 | 16,420,697 - 16,453,510 (+) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 7 | 16,422,008 - 16,452,139 (+) | Ensembl | ChlSab1.1 | ChlSab1.1 Ensembl | chlSab2 | | Vero_WHO_p1.0 | NW_023666066 | 17,490,738 - 17,522,936 (+) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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Lrrc66
(Heterocephalus glaber - naked mole-rat) |
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Expression
RNA-SEQ Expression
High: > 1000 TPM value
Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM
Below Cutoff: < 0.5 TPM
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alimentary part of gastrointestinal system |
circulatory system |
endocrine system |
hemolymphoid system |
musculoskeletal system |
nervous system |
renal system |
reproductive system |
respiratory system |
| High |
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| Medium |
1
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| Low |
7
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2
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3
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4
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2
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7
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2
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2
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1
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| Below cutoff |
1
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2
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1
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15
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1
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Sequence
| RefSeq Acc Id: |
ENSSSCT00000009667 ⟹ ENSSSCP00000009418 |
| Type: |
CODING |
| Position: |
| Pig Assembly | Chr | Position (strand) | Source |
|---|
Sscrofa11.1 Ensembl | 8 | 39,106,927 - 39,126,800 (-) | Ensembl |
|
| RefSeq Acc Id: |
XM_003128972 ⟹ XP_003129020 |
| Type: |
CODING |
| Position: |
| Pig Assembly | Chr | Position (strand) | Source |
|---|
Sscrofa11.1 | 8 | 39,105,931 - 39,127,021 (-) | NCBI |
|
| Sequence: |
GTTAGAAATTGTACAGCCCCCGTCTGGCAAGCCTCTCTCCAGTGGCTTTTCCCCCAGTATCCCA
GGGGAATGTGCATCTCACTGTCCTTGTCACCCCTGTCAAGCTGCAAGAGGCCAGATCCTGGAGG
CGAGCGAGTTGGTTTGCCATAGGGCAGGCTCTGGGCCAGATGGGTGGAGCTTCAAAGACTCAGG
TCTAAAATCCCCACCTGGCATGATTCAGAGAGAGAGCCGCTTGAAAACTCCCTAAGGAGCAAAG
GCATGATGAAAAACCTGTGTTTCAGAATCCTCACCATGATTATAGGTCTTTGTTTGACTGGTAC
AATGACAAACCCATCAAGACAAAGCAGTAATTTATTCAATTCTGAGCGCCAATGGAACAGATAT
CTTCTGACAGATCATTCTGCTGCTGGAAAGCATGCGACACCCATGGATACACAGGTAGCAGCCA
CAGTGGATACAAGTTCCAATTTCTTTAGGGGTCTCTTACAAACGCACATGAGAAAAGAAGAATG
GAATATAAAACATCTGGACCTCAGTAACAGTCTCATACCAAAAATCACCTTCAGCTCTCTTGCA
CATTTTCACAGCTTGGAAGTACTGAACCTCAGCAATAACACCATCCACTCCGTGTCATTGGACC
TACCCAGTGTTAAGTCGTCATGGGTGAAGTGCCACCAAGGCAGCTTGAGAAACGGGCTTCCATT
TCTAAAGTTGCTCATTCTCAAAGGAAATAAACTCGGCAACATTCCCAAGGGGCTATGGAAACTG
AAGTCATTACAGAGTTTGGATCTATCATTCAATGGGATATCAGAAATTGGTATATCTGATTTAC
ATAGCTGCCTGCAACTGGAAAACCTCCACTTAAAAAGCAACAAGATATTCAGAATCCATCCAGC
AGCCTTCAAGGACCTAAAAAAATTACAGGTTGTAGACCTCAGCAACAATGCTCTGACCACCATC
CTGCCGATGATGATCGTGGCTCTAGAACTTCCCCACCTACAGGCCAACTTGGCTGATAACCAGT
GGCAGTGTGACAACAGCGTGGCAGTCTTCCAAAATTTTATTTCAGAATCCTGGAGGGAAAAGTG
GAACACAATTTGCAACAAGTCCACAGGGAAGGAAGAGGCATACCAGTGGGCCCCCAAAAGCAGA
ACATCAGGAGAGACCCGCATCCCTCGCATTAACCTGAACCACACGAAAAGCCTCAGAAGGAGCA
ACGCTGAGAGCCCCGGAGAGGCTGGCTTGTCCTCTCTGGGGAAGACAGATCCTGCCCGCCCTGA
GGCCGGTGAGCAGCAGAGACGGCTGCACAGACGGGTTAGGAGCACCCAGGATGGGCAAACTGCT
GGCAGAAAGGAAGCAGCTTCCGCTTCCCAGGACCTCACCCTGGCCGTCTGCCTGGCCGTCTTCA
TCACATTCCTCGTGGCTTTCTGCCTGGGGGCTTTTGCCAGGCCTTATGTTGACAGACTGTGGCA
ACAGAGATGCCAGAAAAAAAGTCCAGGCTCCGGAGTGGTGTACTCCAACCAGGGCTTCTACGAT
GAAATTGACACTGTGGGGAACACACAGCAGCCAAGGACAGATCAACACCAAACTTTCCAGGATG
TAAACCTCTATGAGAACCAAGCCCCCGGCTGGAGGACAGAGGCCAGCCCACGCACGGATGTCGC
TCTTAAGGGCACACTGCGACAGAGCAGAAAGGAGCCTGGTAGCCAGCAGGGAAGGGGACAATGC
AGGGACCCCAGTGGGTCAGGAAGTAGAAGGGATGAGAAGCTCCCAAATCACAGCGTGGTCTGGC
CCGATCTCCGAGCCCAGCCCGATGCTGAGGATACCCAAGTCCCATGGGCAGGACAGGACCGTCT
CCACAGGGATGACATTCCTACAGAAGGAAACTATGACCCCAGGGCCGGGGAAGTCTCCCCTAAT
GAGCGCTCAGTGGGCATCGCTGCCGAAGCTGTGGGATTGCAAAACGGCCCTGGCTCAATCCAGA
AGGATTTCAATGAGTCGGGCCCACCAGTCCCCAGGAAAATGATGGCTCCTCTCTCGGAAATGCC
AACGCACACAGAAGCTCCGAGGCCTGGTGAGAATGAGGGAAGATGGGCTTCTGGACACTTACCT
TCTGGGTTTTTTAAGGAGAACTTGCTGAGCGCACAGCAGCAAAGGCTCAAGGGCTCGGGGACAG
AGGCAGAGCTTCCTGCCCACCACACTGCAGCCACACTCAGTGACCCAGGACACATGGACCCGTC
CCCGCCTGCTCTCCCTCCAGGGTGGGGCCGGGACCCGCATGTCACTCCTGCTAACAAGGAACCA
GAGCAAAAGCATGCTTCTGAGGCTTGGTATGAGTTAGACTCCAACTCTGATTCTGACGAAGGGT
CTTTATTTACTCTAAGTTCAAGTTCAGAGGATTGGAGACACATGGCTGAGGAGGAAGAAGCCCC
TGGCGAGGAGAGCGGGACAGCCCCCGGGCCCCTGGAGGACAAGGGCTCAGGGGAGAGGAGAGAC
AATGTCATGTCATTAGAGAGCCTTGGGCACAAATGTGAGACTCAGGAAGATCGTTCTGAAAAAA
CTCTCATCTCCAATCCAGTCTCCGGTTTGTTTGAGACTCACCTAGAAAGCGCCTCTAACATCAG
TAAATTTGAGGATCCATTGTCCTCGCCAGGGTCCGTGGGCCACAGTCCGTGCAGTCATGAGATC
CCTGGCATGTCCATTTACGACTACATCTCAGCTCTTCAGCCCCAGCCAGTAGAGTGGCATTGCT
CACTTAGAGACTTGGAATTTTCAAATGTGGATATTTTACCTCCAACACCAGCATGTTCAGCCGA
AGTTCCCTCAGATCCTGAAGACAGAGCTGTTCACGAAGGAGATGTGGACATTTATAACTAGGAA
CCTTAGGTTCAGGGAATAGACACAGCTCAAAACAACCTTCCTTCCAAGATCACTGCAGGGGAAA
AACTGAAGATCTTCAGAACAAGATGCAGAAGGAGTTCCCATTGTGGTGCAGTGGAAACGAATTC
AACTAGTAACCATAAGGTTGCAGGTTCGATCCTTGGCCTCGCCCTGTGCTTTAAGGATCCAGCA
TTGCCATGAACTGTGGTGTAGGTCGCAGATGCAGCTCGGATCCTACGTTGCTGTGACTGTGGTG
TAGGCCAGCAGCTATGGCTCCGATTAGACCCCTAGCCTAGGAACCTCCATATGCTGTGGGCGTG
GCCCTAAAAAGATGGAAAAAAAAAAAGAATAAGATTCAGAGGAAGACAACGTAAATGGACACCA
ATGCTAATGAGGAATTCATACGTCCTCTTAAGGATGATGATTCCAGAAATGTTATAAGCCTAAC
ACAGCTGCTACAATCCTCTGGTGAGGAACCAGCTCTTTGCTGTGAAACGGGGTGGGGTCAGGGG
GATATTCTGAAGACAGTTCCTCAAGCCAAGTTCAATTATTAAAGTGCTTCCAAATAAAACCAGC
TCACTAAGAACACAGGAGGACTTCAGTGTAAAGACTGGGGTCAGCATTCAGAGGGGACTCTGCT
GCAGTTAGAAAAAGCTGATTCTGACTTTTATACTCAAATGCTGACCCAGAGAAACCTGATGGGC
ACTGGCTCTCTAGCTGAGGATGAGCTCTAGATAGAAATGAGAACCTTCAACTTGAAAATCAAAG
AGGGTGAAACCACTGTGGAAAACAGTATGGAGATGCCTCAGAAAACTAAAAATAGAACTCCCAT
TTGATCCAGCAATCCCACTCCTGGGCATCTATCCAGAGAAAACCATGACTTGCAAAGACACATG
TACTCCAATGTTCCCTGTAGCACTCTTTACAATAGCCAAGACATGGAAACAACCTAAATGTCCA
TTGACAGAGGAGTGGATCAAGAAGATGTGGTACATACACACATGGAATATTACTCAGCCATTAA
AAAGAACGAAATACCAGCACTTTTTGGAACATGGATGGACCTAGAAATTATCATACTAAGTGAA
GTCAGCCATACAATGAGACACCAACATCAAACACTTTCACTGACATATGGAATCTGAAAAAAGG
ACAGACTGAACCTCTTTGCAGAACAGACGCTGACTCACAGACATTAAAAAACTTATGGTCTCCA
GAGAGTTTCGGGGGTGGGGGTGTGTGCTTGGATTATGGGATAGAAATCCTGTGAAACTGGATTG
TGATGATCATTATACAACTACAGATGTGATAAAATCATTTGAGTAAT
hide sequence
|
| RefSeq Acc Id: |
XM_021101207 ⟹ XP_020956866 |
| Type: |
CODING |
| Position: |
| Pig Assembly | Chr | Position (strand) | Source |
|---|
Sscrofa11.1 | 8 | 39,105,913 - 39,127,021 (-) | NCBI |
|
| Sequence: |
GTTAGAAATTGTACAGCCCCCGTCTGGCAAGCCTCTCTCCAGTGGCTTTTCCCCCAGTATCCCA
GGGGAATGTGCATCTCACTGTCCTTGTCACCCCTGTCAAGCTGCAAGAGGCCAGATCCTGGAGG
CGAGCGAGTTGGTTTGCCATAGGGCAGGCTCTGGGCCAGATGGGTGGAGCTTCAAAGACTCAGG
TCTAAAATCCCCACCTGGCATGATTCAGAGAGAGAGCCGCTTGAAAACTCCCTAAGGAGCAAAG
GCATGATGAAAAACCTGTGTTTCAGAATCCTCACCATGATTATAGGTCTTTGTTTGACTGGTAC
AATGACAAACCCATCAAGACAAAGCAGTAATTTATTCAATTCTGAGCGCCAATGGAACAGATAT
CTTCTGACAGATCATTCTGCTGCTGGAAAGCATGCGACACCCATGGATACACAGCTTGGAAGTA
CTGAACCTCAGCAATAACACCATCCACTCCGTGTCATTGGACCTACCCAGTGTTAAGTCGTCAT
GGGTGAAGTGCCACCAAGGCAGCTTGAGAAACGGGCTTCCATTTCTAAAGTTGCTCATTCTCAA
AGGAAATAAACTCGGCAACATTCCCAAGGGGCTATGGAAACTGAAGTCATTACAGAGTTTGGAT
CTATCATTCAATGGGATATCAGAAATTGGTATATCTGATTTACATAGCTGCCTGCAACTGGAAA
ACCTCCACTTAAAAAGCAACAAGATATTCAGAATCCATCCAGCAGCCTTCAAGGACCTAAAAAA
ATTACAGGTTGTAGACCTCAGCAACAATGCTCTGACCACCATCCTGCCGATGATGATCGTGGCT
CTAGAACTTCCCCACCTACAGGCCAACTTGGCTGATAACCAGTGGCAGTGTGACAACAGCGTGG
CAGTCTTCCAAAATTTTATTTCAGAATCCTGGAGGGAAAAGTGGAACACAATTTGCAACAAGTC
CACAGGGAAGGAAGAGGCATACCAGTGGGCCCCCAAAAGCAGAACATCAGGAGAGACCCGCATC
CCTCGCATTAACCTGAACCACACGAAAAGCCTCAGAAGGAGCAACGCTGAGAGCCCCGGAGAGG
CTGGCTTGTCCTCTCTGGGGAAGACAGATCCTGCCCGCCCTGAGGCCGGTGAGCAGCAGAGACG
GCTGCACAGACGGGTTAGGAGCACCCAGGATGGGCAAACTGCTGGCAGAAAGGAAGCAGCTTCC
GCTTCCCAGGACCTCACCCTGGCCGTCTGCCTGGCCGTCTTCATCACATTCCTCGTGGCTTTCT
GCCTGGGGGCTTTTGCCAGGCCTTATGTTGACAGACTGTGGCAACAGAGATGCCAGAAAAAAAG
TCCAGGCTCCGGAGTGGTGTACTCCAACCAGGGCTTCTACGATGAAATTGACACTGTGGGGAAC
ACACAGCAGCCAAGGACAGATCAACACCAAACTTTCCAGGATGTAAACCTCTATGAGAACCAAG
CCCCCGGCTGGAGGACAGAGGCCAGCCCACGCACGGATGTCGCTCTTAAGGGCACACTGCGACA
GAGCAGAAAGGAGCCTGGTAGCCAGCAGGGAAGGGGACAATGCAGGGACCCCAGTGGGTCAGGA
AGTAGAAGGGATGAGAAGCTCCCAAATCACAGCGTGGTCTGGCCCGATCTCCGAGCCCAGCCCG
ATGCTGAGGATACCCAAGTCCCATGGGCAGGACAGGACCGTCTCCACAGGGATGACATTCCTAC
AGAAGGAAACTATGACCCCAGGGCCGGGGAAGTCTCCCCTAATGAGCGCTCAGTGGGCATCGCT
GCCGAAGCTGTGGGATTGCAAAACGGCCCTGGCTCAATCCAGAAGGATTTCAATGAGTCGGGCC
CACCAGTCCCCAGGAAAATGATGGCTCCTCTCTCGGAAATGCCAACGCACACAGAAGCTCCGAG
GCCTGGTGAGAATGAGGGAAGATGGGCTTCTGGACACTTACCTTCTGGGTTTTTTAAGGAGAAC
TTGCTGAGCGCACAGCAGCAAAGGCTCAAGGGCTCGGGGACAGAGGCAGAGCTTCCTGCCCACC
ACACTGCAGCCACACTCAGTGACCCAGGACACATGGACCCGTCCCCGCCTGCTCTCCCTCCAGG
GTGGGGCCGGGACCCGCATGTCACTCCTGCTAACAAGGAACCAGAGCAAAAGCATGCTTCTGAG
GCTTGGTATGAGTTAGACTCCAACTCTGATTCTGACGAAGGGTCTTTATTTACTCTAAGTTCAA
GTTCAGAGGATTGGAGACACATGGCTGAGGAGGAAGAAGCCCCTGGCGAGGAGAGCGGGACAGC
CCCCGGGCCCCTGGAGGACAAGGGCTCAGGGGAGAGGAGAGACAATGTCATGTCATTAGAGAGC
CTTGGGCACAAATGTGAGACTCAGGAAGATCGTTCTGAAAAAACTCTCATCTCCAATCCAGTCT
CCGGTTTGTTTGAGACTCACCTAGAAAGCGCCTCTAACATCAGTAAATTTGAGGATCCATTGTC
CTCGCCAGGGTCCGTGGGCCACAGTCCGTGCAGTCATGAGATCCCTGGCATGTCCATTTACGAC
TACATCTCAGCTCTTCAGCCCCAGCCAGTAGAGTGGCATTGCTCACTTAGAGACTTGGAATTTT
CAAATGTGGATATTTTACCTCCAACACCAGCATGTTCAGCCGAAGTTCCCTCAGATCCTGAAGA
CAGAGCTGTTCACGAAGGAGATGTGGACATTTATAACTAGGAACCTTAGGTTCAGGGAATAGAC
ACAGCTCAAAACAACCTTCCTTCCAAGATCACTGCAGGGGAAAAACTGAAGATCTTCAGAACAA
GATGCAGAAGGAGTTCCCATTGTGGTGCAGTGGAAACGAATTCAACTAGTAACCATAAGGTTGC
AGGTTCGATCCTTGGCCTCGCCCTGTGCTTTAAGGATCCAGCATTGCCATGAACTGTGGTGTAG
GTCGCAGATGCAGCTCGGATCCTACGTTGCTGTGACTGTGGTGTAGGCCAGCAGCTATGGCTCC
GATTAGACCCCTAGCCTAGGAACCTCCATATGCTGTGGGCGTGGCCCTAAAAAGATGGAAAAAA
AAAAAGAATAAGATTCAGAGGAAGACAACGTAAATGGACACCAATGCTAATGAGGAATTCATAC
GTCCTCTTAAGGATGATGATTCCAGAAATGTTATAAGCCTAACACAGCTGCTACAATCCTCTGG
TGAGGAACCAGCTCTTTGCTGTGAAACGGGGTGGGGTCAGGGGGATATTCTGAAGACAGTTCCT
CAAGCCAAGTTCAATTATTAAAGTGCTTCCAAATAAAACCAGCTCACTAAGAACACAGGAGGAC
TTCAGTGTAAAGACTGGGGTCAGCATTCAGAGGGGACTCTGCTGCAGTTAGAAAAAGCTGATTC
TGACTTTTATACTCAAATGCTGACCCAGAGAAACCTGATGGGCACTGGCTCTCTAGCTGAGGAT
GAGCTCTAGATAGAAATGAGAACCTTCAACTTGAAAATCAAAGAGGGTGAAACCACTGTGGAAA
ACAGTATGGAGATGCCTCAGAAAACTAAAAATAGAACTCCCATTTGATCCAGCAATCCCACTCC
TGGGCATCTATCCAGAGAAAACCATGACTTGCAAAGACACATGTACTCCAATGTTCCCTGTAGC
ACTCTTTACAATAGCCAAGACATGGAAACAACCTAAATGTCCATTGACAGAGGAGTGGATCAAG
AAGATGTGGTACATACACACATGGAATATTACTCAGCCATTAAAAAGAACGAAATACCAGCACT
TTTTGGAACATGGATGGACCTAGAAATTATCATACTAAGTGAAGTCAGCCATACAATGAGACAC
CAACATCAAACACTTTCACTGACATATGGAATCTGAAAAAAGGACAGACTGAACCTCTTTGCAG
AACAGACGCTGACTCACAGACATTAAAAAACTTATGGTCTCCAGAGAGTTTCGGGGGTGGGGGT
GTGTGCTTGGATTATGGGATAGAAATCCTGTGAAACTGGATTGTGATGATCATTATACAACTAC
AGATGTGATAAAATCATTTGAGTAATTAAAAAAAAGAAAAAATC
hide sequence
|
| RefSeq Acc Id: |
XM_021101208 ⟹ XP_020956867 |
| Type: |
CODING |
| Position: |
| Pig Assembly | Chr | Position (strand) | Source |
|---|
Sscrofa11.1 | 8 | 39,104,727 - 39,123,923 (-) | NCBI |
|
| Sequence: |
CACCATCCACTCCGTGTCATTGGACCTACCCAGTGTTAAGTCGTCATGGGTGAAGTGCCACCAA
GGCAGCTTGAGAAACGGGCTTCCATTTCTAAAGTTGCTCATTCTCAAAGGAAATAAACTCGGCA
ACATTCCCAAGGTTTCTGGTCCGGTTTTAAGCATAATTTTGACAGTAATAGCTTGGCAAGTAAA
GGGGCAATTATTCCAGTCACCGCATCAGCAGAATTGTGTGAGAAGGGGCTATGGAAACTGAAGT
CATTACAGAGTTTGGATCTATCATTCAATGGGATATCAGAAATTGGTATATCTGATTTACATAG
CTGCCTGCAACTGGAAAACCTCCACTTAAAAAGCAACAAGATATTCAGAATCCATCCAGCAGCC
TTCAAGGACCTAAAAAAATTACAGGTTGTAGACCTCAGCAACAATGCTCTGACCACCATCCTGC
CGATGATGATCGTGGCTCTAGAACTTCCCCACCTACAGGCCAACTTGGCTGATAACCAGTGGCA
GTGTGACAACAGCGTGGCAGTCTTCCAAAATTTTATTTCAGAATCCTGGAGGGAAAAGTGGAAC
ACAATTTGCAACAAGTCCACAGGGAAGGAAGAGGCATACCAGTGGGCCCCCAAAAGCAGAACAT
CAGGAGAGACCCGCATCCCTCGCATTAACCTGAACCACACGAAAAGCCTCAGAAGGAGCAACGC
TGAGAGCCCCGGAGAGGCTGGCTTGTCCTCTCTGGGGAAGACAGATCCTGCCCGCCCTGAGGCC
GGTGAGCAGCAGAGACGGCTGCACAGACGGGTTAGGAGCACCCAGGATGGGCAAACTGCTGGCA
GAAAGGAAGCAGCTTCCGCTTCCCAGGACCTCACCCTGGCCGTCTGCCTGGCCGTCTTCATCAC
ATTCCTCGTGGCTTTCTGCCTGGGGGCTTTTGCCAGGCCTTATGTTGACAGACTGTGGCAACAG
AGATGCCAGAAAAAAAGTCCAGGCTCCGGAGTGGTGTACTCCAACCAGGGCTTCTACGATGAAA
TTGACACTGTGGGGAACACACAGCAGCCAAGGACAGATCAACACCAAACTTTCCAGGATGTAAA
CCTCTATGAGAACCAAGCCCCCGGCTGGAGGACAGAGGCCAGCCCACGCACGGATGTCGCTCTT
AAGGGCACACTGCGACAGAGCAGAAAGGAGCCTGGTAGCCAGCAGGGAAGGGGACAATGCAGGG
ACCCCAGTGGGTCAGGAAGTAGAAGGGATGAGAAGCTCCCAAATCACAGCGTGGTCTGGCCCGA
TCTCCGAGCCCAGCCCGATGCTGAGGATACCCAAGTCCCATGGGCAGGACAGGACCGTCTCCAC
AGGGATGACATTCCTACAGAAGGAAACTATGACCCCAGGGCCGGGGAAGTCTCCCCTAATGAGC
GCTCAGTGGGCATCGCTGCCGAAGCTGTGGGATTGCAAAACGGCCCTGGCTCAATCCAGAAGGA
TTTCAATGAGTCGGGCCCACCAGTCCCCAGGAAAATGATGGCTCCTCTCTCGGAAATGCCAACG
CACACAGAAGCTCCGAGGCCTGGTGAGAATGAGGGAAGATGGGCTTCTGGACACTTACCTTCTG
GGTTTTTTAAGGAGAACTTGCTGAGCGCACAGCAGCAAAGGCTCAAGGGCTCGGGGACAGAGGC
AGAGCTTCCTGCCCACCACACTGCAGCCACACTCAGTGACCCAGGACACATGGACCCGTCCCCG
CCTGCTCTCCCTCCAGGGTGGGGCCGGGACCCGCATGTCACTCCTGCTAACAAGGAACCAGAGC
AAAAGCATGCTTCTGAGGCTTGGTATGAGTTAGACTCCAACTCTGATTCTGACGAAGGGTCTTT
ATTTACTCTAAGTTCAAGTTCAGAGGATTGGAGACACATGGCTGAGGAGGAAGAAGCCCCTGGC
GAGGAGAGCGGGACAGCCCCCGGGCCCCTGGAGGACAAGGGCTCAGGGGAGAGGAGAGACAATG
TCATGTCATTAGAGAGCCTTGGGCACAAATGTGAGACTCAGGAAGATCGTTCTGAAAAAACTCT
CATCTCCAATCCAGTCTCCGGTTTGTTTGAGACTCACCTAGAAAGCGCCTCTAACATCAGTAAA
TTTGAGGATCCATTGTCCTCGCCAGGGTCCGTGGGCCACAGTCCGTGCAGTCATGAGATCCCTG
GCATGTCCATTTACGACTACATCTCAGCTCTTCAGCCCCAGCCAGTAGAGTGGCATTGCTCACT
TAGAGACTTGGAATTTTCAAATGTGGATATTTTACCTCCAACACCAGCATGTTCAGCCGAAGTT
CCCTCAGATCCTGAAGACAGAGCTGTTCACGAAGGAGATGTGGACATTTATAACTAGGAACCTT
AGGTTCAGGGAATAGACACAGCTCAAAACAACCTTCCTTCCAAGATCACTGCAGGGGAAAAACT
GAAGATCTTCAGAACAAGATGCAGAAGGAGTTCCCATTGTGGTGCAGTGGAAACGAATTCAACT
AGTAACCATAAGGTTGCAGGTTCGATCCTTGGCCTCGCCCTGTGCTTTAAGGATCCAGCATTGC
CATGAACTGTGGTGTAGGTCGCAGATGCAGCTCGGATCCTACGTTGCTGTGACTGTGGTGTAGG
CCAGCAGCTATGGCTCCGATTAGACCCCTAGCCTAGGAACCTCCATATGCTGTGGGCGTGGCCC
TAAAAAGATGGAAAAAAAAAAAGAATAAGATTCAGAGGAAGACAACGTAAATGGACACCAATGC
TAATGAGGAATTCATACGTCCTCTTAAGGATGATGATTCCAGAAATGTTATAAGCCTAACACAG
CTGCTACAATCCTCTGGTGAGGAACCAGCTCTTTGCTGTGAAACGGGGTGGGGTCAGGGGGATA
TTCTGAAGACAGTTCCTCAAGCCAAGTTCAATTATTAAAGTGCTTCCAAATAAAACCAGCTCAC
TAAGAACACAGGAGGACTTCAGTGTAAAGACTGGGGTCAGCATTCAGAGGGGACTCTGCTGCAG
TTAGAAAAAGCTGATTCTGACTTTTATACTCAAATGCTGACCCAGAGAAACCTGATGGGCACTG
GCTCTCTAGCTGAGGATGAGCTCTAGATAGAAATGAGAACCTTCAACTTGAAAATCAAAGAGGG
TGAAACCACTGTGGAAAACAGTATGGAGATGCCTCAGAAAACTAAAAATAGAACTCCCATTTGA
TCCAGCAATCCCACTCCTGGGCATCTATCCAGAGAAAACCATGACTTGCAAAGACACATGTACT
CCAATGTTCCCTGTAGCACTCTTTACAATAGCCAAGACATGGAAACAACCTAAATGTCCATTGA
CAGAGGAGTGGATCAAGAAGATGTGGTACATACACACATGGAATATTACTCAGCCATTAAAAAG
AACGAAATACCAGCACTTTTTGGAACATGGATGGACCTAGAAATTATCATACTAAGTGAAGTCA
GCCATACAATGAGACACCAACATCAAACACTTTCACTGACATATGGAATCTGAAAAAAGGACAG
ACTGAACCTCTTTGCAGAACAGACGCTGACTCACAGACATTAAAAAACTTATGGTCTCCAGAGA
GTTTCGGGGGTGGGGGTGTGTGCTTGGATTATGGGATAGAAATCCTGTGAAACTGGATTGTGAT
GATCATTATACAACTACAGATGTGATAAAATCATTTGAGTAATTAAAAAAAAGAAAAAATCAAA
GAGAACTCAAGTAACATTTTTAGTGCCTATTGAAGCCCTTAGATGGAGCTGCTGAATAGACTTT
AACAAACTCTGCACAGAGACCAGTGCAGCTTTTTGGAGGTTGATTAGGGAACTACAAAATTGGA
GGGATTCTGAGCGATTCTAAATATTTGTTAAAAAGTAATGTTAAGGGAGGGACCATTTTGTAGA
ACAAAATGTAAATGAAAAATCAATGTTCAGTAGTTCCCTGGTGGCCTAGTGGTTAAAGATCCAG
GCAGTATTTATATCCTTGGGGCCCTACCTCATTCCACAGTGACAGACACATCAGACTATGGCAC
CTGCCATACCTTACCCGCCCTGCTCCCCATCTTCTGGGTTGTACCACTGGCCTCTCCACTAAGC
CTGGCCTCATCTGCCCCAAAAATATCCATGCTGTTTTTCAAGACACCGTTTATTTTTTTATTTT
GTTTTTGTTTTGTTTCGTTTTTTCTTTTCAGGGCCGCACCCACAGCATATGGAGGTTCCCAGGC
TAGGGGGCAAATTGGAGCTGCAGCTGCCGGCCTATACCAGAGCCACAACAATGCCGGATCCTTA
ACCCACCGAGTGAGGCCAGGGATGGAACCCGCATCCCGATGGATACTGGTTGGGTTCGTAACCC
ACTGAGCCACAACAGGAACTCCCAAGACAGTGTTTAAGGGTCAGCTCCTCCATGAGCCTGTCTC
AGCTCATTCCATCCAAGTAGAATGGACCACTGCCTTCCTCCCTTGGGCCCCGCCTTGTGCATTA
TGGAGAAAACAAGGTTTCACGTTACTTGATTGAAATCTACTGGATACTCTCCTGTGGGCCAGCA
TCTGGCTGCTGGGTGAAGTTCAGTTCCAGCAGAGTCTACGAAGCTGAAAATCATCTCAGCTTTG
GCAGTTACTTTATGAAGGGAAAAACTGCTCTCTAGTCCATCAGCACTGAGAGAAAAGTATATAC
AGTGTTGACTGGTTTTGTTTGTTTTTGTTCACACTTCCAAAAAAAAAAAAAAAGGCTTCAGGTA
ATGTGGCATAAACAGCACACATCACAGGCATGGCAGTTAGGTAGCTCTGTGTCTCAGCAAGCAC
TCAAAAAACAAGGTTTTTCTGTTTGTTTTTTTGTTTTTTGTTTTTTTTGCTCTTTAGGGCTGTA
CCCACGGCATATGGAGTTTCCCAAGCTAGGA
hide sequence
|
| RefSeq Acc Id: |
XP_020956867 ⟸ XM_021101208 |
| - Peptide Label: |
isoform X3 |
| - UniProtKB: |
A0A8D1XEV7 (UniProtKB/TrEMBL) |
| - Sequence: |
MMIVALELPHLQANLADNQWQCDNSVAVFQNFISESWREKWNTICNKSTGKEEAYQWAPKSRTS
GETRIPRINLNHTKSLRRSNAESPGEAGLSSLGKTDPARPEAGEQQRRLHRRVRSTQDGQTAGR
KEAASASQDLTLAVCLAVFITFLVAFCLGAFARPYVDRLWQQRCQKKSPGSGVVYSNQGFYDEI
DTVGNTQQPRTDQHQTFQDVNLYENQAPGWRTEASPRTDVALKGTLRQSRKEPGSQQGRGQCRD
PSGSGSRRDEKLPNHSVVWPDLRAQPDAEDTQVPWAGQDRLHRDDIPTEGNYDPRAGEVSPNER
SVGIAAEAVGLQNGPGSIQKDFNESGPPVPRKMMAPLSEMPTHTEAPRPGENEGRWASGHLPSG
FFKENLLSAQQQRLKGSGTEAELPAHHTAATLSDPGHMDPSPPALPPGWGRDPHVTPANKEPEQ
KHASEAWYELDSNSDSDEGSLFTLSSSSEDWRHMAEEEEAPGEESGTAPGPLEDKGSGERRDNV
MSLESLGHKCETQEDRSEKTLISNPVSGLFETHLESASNISKFEDPLSSPGSVGHSPCSHEIPG
MSIYDYISALQPQPVEWHCSLRDLEFSNVDILPPTPACSAEVPSDPEDRAVHEGDVDIYN
hide sequence
|
| RefSeq Acc Id: |
XP_020956866 ⟸ XM_021101207 |
| - Peptide Label: |
isoform X2 |
| - UniProtKB: |
F1SE78 (UniProtKB/TrEMBL), A0A8D1XEV7 (UniProtKB/TrEMBL) |
| - Sequence: |
MRHPWIHSLEVLNLSNNTIHSVSLDLPSVKSSWVKCHQGSLRNGLPFLKLLILKGNKLGNIPKG
LWKLKSLQSLDLSFNGISEIGISDLHSCLQLENLHLKSNKIFRIHPAAFKDLKKLQVVDLSNNA
LTTILPMMIVALELPHLQANLADNQWQCDNSVAVFQNFISESWREKWNTICNKSTGKEEAYQWA
PKSRTSGETRIPRINLNHTKSLRRSNAESPGEAGLSSLGKTDPARPEAGEQQRRLHRRVRSTQD
GQTAGRKEAASASQDLTLAVCLAVFITFLVAFCLGAFARPYVDRLWQQRCQKKSPGSGVVYSNQ
GFYDEIDTVGNTQQPRTDQHQTFQDVNLYENQAPGWRTEASPRTDVALKGTLRQSRKEPGSQQG
RGQCRDPSGSGSRRDEKLPNHSVVWPDLRAQPDAEDTQVPWAGQDRLHRDDIPTEGNYDPRAGE
VSPNERSVGIAAEAVGLQNGPGSIQKDFNESGPPVPRKMMAPLSEMPTHTEAPRPGENEGRWAS
GHLPSGFFKENLLSAQQQRLKGSGTEAELPAHHTAATLSDPGHMDPSPPALPPGWGRDPHVTPA
NKEPEQKHASEAWYELDSNSDSDEGSLFTLSSSSEDWRHMAEEEEAPGEESGTAPGPLEDKGSG
ERRDNVMSLESLGHKCETQEDRSEKTLISNPVSGLFETHLESASNISKFEDPLSSPGSVGHSPC
SHEIPGMSIYDYISALQPQPVEWHCSLRDLEFSNVDILPPTPACSAEVPSDPEDRAVHEGDVDI
YN
hide sequence
|
| RefSeq Acc Id: |
XP_003129020 ⟸ XM_003128972 |
| - Peptide Label: |
isoform X1 |
| - UniProtKB: |
A0A4X1UG09 (UniProtKB/TrEMBL), A0A8D0QE60 (UniProtKB/TrEMBL) |
| - Sequence: |
MMKNLCFRILTMIIGLCLTGTMTNPSRQSSNLFNSERQWNRYLLTDHSAAGKHATPMDTQVAAT
VDTSSNFFRGLLQTHMRKEEWNIKHLDLSNSLIPKITFSSLAHFHSLEVLNLSNNTIHSVSLDL
PSVKSSWVKCHQGSLRNGLPFLKLLILKGNKLGNIPKGLWKLKSLQSLDLSFNGISEIGISDLH
SCLQLENLHLKSNKIFRIHPAAFKDLKKLQVVDLSNNALTTILPMMIVALELPHLQANLADNQW
QCDNSVAVFQNFISESWREKWNTICNKSTGKEEAYQWAPKSRTSGETRIPRINLNHTKSLRRSN
AESPGEAGLSSLGKTDPARPEAGEQQRRLHRRVRSTQDGQTAGRKEAASASQDLTLAVCLAVFI
TFLVAFCLGAFARPYVDRLWQQRCQKKSPGSGVVYSNQGFYDEIDTVGNTQQPRTDQHQTFQDV
NLYENQAPGWRTEASPRTDVALKGTLRQSRKEPGSQQGRGQCRDPSGSGSRRDEKLPNHSVVWP
DLRAQPDAEDTQVPWAGQDRLHRDDIPTEGNYDPRAGEVSPNERSVGIAAEAVGLQNGPGSIQK
DFNESGPPVPRKMMAPLSEMPTHTEAPRPGENEGRWASGHLPSGFFKENLLSAQQQRLKGSGTE
AELPAHHTAATLSDPGHMDPSPPALPPGWGRDPHVTPANKEPEQKHASEAWYELDSNSDSDEGS
LFTLSSSSEDWRHMAEEEEAPGEESGTAPGPLEDKGSGERRDNVMSLESLGHKCETQEDRSEKT
LISNPVSGLFETHLESASNISKFEDPLSSPGSVGHSPCSHEIPGMSIYDYISALQPQPVEWHCS
LRDLEFSNVDILPPTPACSAEVPSDPEDRAVHEGDVDIYN
hide sequence
|
| RefSeq Acc Id: |
ENSSSCP00000009418 ⟸ ENSSSCT00000009667 |
Additional Information
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