LOC100516628 (UDP-glucuronosyltransferase 2B18-like)

Gene: LOC100516628 (UDP-glucuronosyltransferase 2B18-like) Sus scrofa

Analyze

Symbol:

LOC100516628

Name:

UDP-glucuronosyltransferase 2B18-like

RGD ID:

14180617

Description:

ENCODES a protein that exhibits glucuronosyltransferase activity (inferred); glycosyltransferase activity (inferred); UDP-glycosyltransferase activity (inferred); INVOLVED IN bile acid metabolic process (ortholog); FOUND IN membrane (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

RGD Orthologs

Human

Mouse

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	8	66,377,171 - 66,395,323 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	8	70,821,924 - 70,840,082 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

bile acid metabolic process (ISO)

cellular glucuronidation (IEA)

estrogen metabolic process (IEA)

Cellular Component

membrane (IEA)

Molecular Function

glucuronosyltransferase activity (IEA)

glycosyltransferase activity (IEA)

UDP-glycosyltransferase activity (IEA)

References

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

LOC100516628
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	8	66,377,171 - 66,395,323 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	8	70,821,924 - 70,840,082 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

UGT2A2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	69,588,417 - 69,639,642 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	4	69,588,417 - 69,639,642 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	4	70,454,135 - 70,505,360 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	70,489,679 - 70,539,923 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	4	67,801,132 - 67,858,275 (-)	NCBI		Celera
Cytogenetic Map	4	q13.3	NCBI
HuRef	4	66,252,679 - 66,303,221 (-)	NCBI		HuRef
CHM1_1	4	70,490,004 - 70,541,192 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	4	72,923,224 - 72,974,440 (-)	NCBI		T2T-CHM13v2.0

Ugt2a2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	87,607,352 - 87,630,117 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	87,607,349 - 87,630,119 (-)	Ensembl		GRCm39 Ensembl
GRCm38	5	87,459,493 - 87,482,258 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	87,459,490 - 87,482,260 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	87,888,518 - 87,911,283 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	88,534,054 - 88,556,819 (-)	NCBI		MGSCv36	mm8
Celera	5	84,675,884 - 84,698,650 (-)	NCBI		Celera
Cytogenetic Map	5	E1	NCBI
cM Map	5	43.56	NCBI

Variants

Variants in LOC100516628
362 total Variants

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003129071	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021101408	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000067	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_003129071 ⟹ XP_003129119

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	8	66,377,171 - 66,395,322 (-)	NCBI

Sequence:

show sequence

TTTAAATTTCAGAAAGTTTGTGAAGAAGGTTTAGATTTTACCAAAATGTCTAAGACAAGGGATT
CCCTTCTTTTGCTTTTTTTTTATTTCAGTTGTGCCTCCGGTGGACACCTGCTGGTTTGGCCCAT
GGAATACAGCCACTGGATCAATTTAAAGACAATATTGAATGAACTTGCTCAGAGGGGCCATGAA
GTAACCGTGCTAGCATCTTCAGCTTCCATCCTTGTAGATCCCAATGAACCATCTGCCTTCAAAT
TTGAGGTTTATCCTACATCATTTACTAAGAAGGAGCTTGATATGCACTTTATGAAATGGGTCAA
GACATGGACATATGATTTACCAAAGAGTACATTATGGGCATATGATTCAAAGATGCAAAAAATA
TACCACGAATATTCTGATACTGTTCAAAAGCTTTGTGAGGATGTAGTTTTGAACCAGAAACTTA
TGAAGAAACTGCAAGGATCAAGATATGACGTTGTTCTTGGAGATGCCATTTCTCCCTGTGCTGA
GTTGCTGTCTGAACTACTTAACCTACCTTTGGTCTACAGTCTTCGATTTACCACTGGCAAAACA
TATGAAAAACTCTGTGGAGGGCTTATATTACCTCCTTCCTATGTACCTGTTATCATATCAGAAC
TTAGTGACAAAATGACATTTATGGAGAGGGTGACAAACATGTTGTATTACCTATATTTTGACTA
CGCATTTGAGACTTTCAACAAGAAAAAGTGGGATAAATTTTACAGTGAAGTATTAGGAAGACCC
ACTACATTGTGTGAATTGATGGGGAAAGCAGATATTTGGCTGATAAGAAACTATTGGGATTTTG
AATTTCCTCACCCATTCTTACCAAATTTTGAATTTGTTGGAGGCCTCCACTGCAAACCTGCCAA
ACCCCTGCCTAAGGAAATTGAAGAATTTGTCCAGAGCTCTGGAGAAGATGGCATCGTAGTATTT
AGTTTGGGGTCAATGGTTCAAAACCTTACAGAAGAAAGGTCTAACACAATTGCATCAGCCCTTG
CCCAGATTCCACAGAAGGTTATCTGGAGATTCAATGGGAAGAAACCTGAGAAGTTGGGAAGCAA
TACTCAGCTCCTTAAGTGGATCCCACAGAATGATCTTCTTGGTCATCCCAAAACCAAAGCTTTT
ATCACCCATGGTGGTGGCAATGGCATCTATGAAGCCATTTACCATGGGATTCCCATGGTAGGAC
TCCCCATGTTTGTTGACCAACCTGATAATATTGCTCACATGATGGCCAAGGGAGCAGCTGTTAG
ATTGGACTTGAACACAATGTCAAGTACAGATTTGTTCAATGCACTGAGGACTGTCATTAATGAC
CCTTCATATAAAGAGAATGCTATGAGGTTATCAAGGATCCACCACGATCAACCTGTAAAGCCCC
TGGATCGCGCAGTATTCTGGATCGAGTTTGTCATGCGTCACAAAGGAGCTAAGCACTTGCGGGC
AGCAGCCCACGACCTCACCTGGTACCAGTACCACTCTCTGGATGTGATTGGGTTCCTGCTGGCC
TGTGTGGCAACAGCTATATATGTCACCACAAGATGTTGTCTGTTTTGTTGCTGGAAGTTGGCTA
AAACAGGAAAGAAGGGGAAGAGGGAGTAGCTGTATCTGAGACCTGAAGCAGTTATGCTTTATAG
ATGGAACTCATCAGTTTATTCCAAAAGGAGGGAGGTGTGATTAGGTGCCCATCCTCTTGTGACA
AAATGACTTCTCATAATTTAGCATCTCAGATCAAAGTTTTTTTCAAGAGATTTTCTACCTATGA
GTTAGAAATATGTTAGGCCAAGAGAAAAACTGGTAAAAATTAAATAAAAATAAAACTATATG

hide sequence

RefSeq Acc Id:

XM_021101408 ⟹ XP_020957067

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	8	66,377,280 - 66,395,323 (-)	NCBI

Sequence:

show sequence

ATTTAAATTTCAGAAAGTTTGTGAAGAAGGTTTAGATTTTACCAAAATGTCTAAGACAAGGGAT
TCCCTTCTTTTGCTTTTTTTTTATTTCAGTTGTGCCTCCGGTGGACACCTGCTGGTTTGGCCCA
TGGAATACAGCCACTGGATCAATTTAAAGACAATATTGAATGAACTTGCTCAGAGGGGCCATGA
AGTAACCGTGCTAGCATCTTCAGCTTCCATCCTTGTAGATCCCAATGAACCATCTGCCTTCAAA
TTTGAGGTTTATCCTACATCATTTACTAAGAAGGAGCTTGATATGCACTTTATGAAATGGGTCA
AGACATGGACATATGATTTACCAAAGAGTACATTATGGGCATATGATTCAAAGATGCAAAAAAT
ATACCACGAATATTCTGATACTGTTCAAAAGCTTTGTGAGGATGTAGTTTTGAACCAGAAACTT
ATGAAGAAACTGCAAGGATCAAGATATGACGTTGTTCTTGGAGATGCCATTTCTCCCTGTGCTG
AGTTGCTGTCTGAACTACTTAACCTACCTTTGGTCTACAGTCTTCGATTTACCACTGGCAAAAC
ATATGAAAAACTCTGTGGAGGGCTTATATTACCTCCTTCCTATGTACCTGTTATCATATCAGAA
CTTAGTGACAAAATGACATTTATGGAGAGGGTGACAAACATGTTGTATTACCTATATTTTGACT
ACGCATTTGAGACTTTCAACAAGAAAAAGTGGGATAAATTTTACAGTGAAGTATTAGGAAGACC
CACTACATTGTGTGAATTGATGGGGAAAGCAGATATTTGGCTGATAAGAAACTATTGGGATTTT
GAATTTCCTCACCCATTCTTACCAAATTTTGAATTTGTTGGAGGCCTCCACTGCAAACCTGCCA
AACCCCTGCCTAAGGTTATCTGGAGATTCAATGGGAAGAAACCTGAGAAGTTGGGAAGCAATAC
TCAGCTCCTTAAGTGGATCCCACAGAATGATCTTCTTGGTCATCCCAAAACCAAAGCTTTTATC
ACCCATGGTGGTGGCAATGGCATCTATGAAGCCATTTACCATGGGATTCCCATGGTAGGACTCC
CCATGTTTGTTGACCAACCTGATAATATTGCTCACATGATGGCCAAGGGAGCAGCTGTTAGATT
GGACTTGAACACAATGTCAAGTACAGATTTGTTCAATGCACTGAGGACTGTCATTAATGACCCT
TCATATAAAGAGAATGCTATGAGGTTATCAAGGATCCACCACGATCAACCTGTAAAGCCCCTGG
ATCGCGCAGTATTCTGGATCGAGTTTGTCATGCGTCACAAAGGAGCTAAGCACTTGCGGGCAGC
AGCCCACGACCTCACCTGGTACCAGTACCACTCTCTGGATGTGATTGGGTTCCTGCTGGCCTGT
GTGGCAACAGCTATATATGTCACCACAAGATGTTGTCTGTTTTGTTGCTGGAAGTTGGCTAAAA
CAGGAAAGAAGGGGAAGAGGGAGTAGCTGTATCTGAGACCTGAAGCAGTTATGCTTTATAGATG
GAACTCATCAGTTTATTCCAAAAGGAGGGAGGTGTGATTAGGTGCCCATCCTCTTGTGACAAAA
TGACTTCTCATAAT

hide sequence

Protein Sequences


Protein RefSeqs	XP_003129119	(Get FASTA)	NCBI Sequence Viewer
	XP_020957067	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000077899
	ENSSSCP00000077899.1
	ENSSSCP00005005378.1
	ENSSSCP00015019858.1
	ENSSSCP00030028826.1
	ENSSSCP00040032623.1
	ENSSSCP00060004606.1

RefSeq Acc Id:	XP_003129119 ⟸ XM_003129071
- Peptide Label:	isoform X1
- UniProtKB:	A0A8D1UHF6 (UniProtKB/TrEMBL), A0A480QK70 (UniProtKB/TrEMBL), A0A8D0X336 (UniProtKB/TrEMBL), A0A8D0NIX8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSKTRDSLLLLFFYFSCASGGHLLVWPMEYSHWINLKTILNELAQRGHEVTVLASSASILVDPN EPSAFKFEVYPTSFTKKELDMHFMKWVKTWTYDLPKSTLWAYDSKMQKIYHEYSDTVQKLCEDV VLNQKLMKKLQGSRYDVVLGDAISPCAELLSELLNLPLVYSLRFTTGKTYEKLCGGLILPPSYV PVIISELSDKMTFMERVTNMLYYLYFDYAFETFNKKKWDKFYSEVLGRPTTLCELMGKADIWLI RNYWDFEFPHPFLPNFEFVGGLHCKPAKPLPKEIEEFVQSSGEDGIVVFSLGSMVQNLTEERSN TIASALAQIPQKVIWRFNGKKPEKLGSNTQLLKWIPQNDLLGHPKTKAFITHGGGNGIYEAIYH GIPMVGLPMFVDQPDNIAHMMAKGAAVRLDLNTMSSTDLFNALRTVINDPSYKENAMRLSRIHH DQPVKPLDRAVFWIEFVMRHKGAKHLRAAAHDLTWYQYHSLDVIGFLLACVATAIYVTTRCCLF CCWKLAKTGKKGKRE hide sequence

RefSeq Acc Id:	XP_020957067 ⟸ XM_021101408
- Peptide Label:	isoform X2
- UniProtKB:	A0A8D0X336 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSKTRDSLLLLFFYFSCASGGHLLVWPMEYSHWINLKTILNELAQRGHEVTVLASSASILVDPN EPSAFKFEVYPTSFTKKELDMHFMKWVKTWTYDLPKSTLWAYDSKMQKIYHEYSDTVQKLCEDV VLNQKLMKKLQGSRYDVVLGDAISPCAELLSELLNLPLVYSLRFTTGKTYEKLCGGLILPPSYV PVIISELSDKMTFMERVTNMLYYLYFDYAFETFNKKKWDKFYSEVLGRPTTLCELMGKADIWLI RNYWDFEFPHPFLPNFEFVGGLHCKPAKPLPKVIWRFNGKKPEKLGSNTQLLKWIPQNDLLGHP KTKAFITHGGGNGIYEAIYHGIPMVGLPMFVDQPDNIAHMMAKGAAVRLDLNTMSSTDLFNALR TVINDPSYKENAMRLSRIHHDQPVKPLDRAVFWIEFVMRHKGAKHLRAAAHDLTWYQYHSLDVI GFLLACVATAIYVTTRCCLFCCWKLAKTGKKGKRE hide sequence

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000053507	ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00005005961	UniProtKB/TrEMBL
	ENSSSCG00015037210	UniProtKB/TrEMBL
	ENSSSCG00030045176	UniProtKB/TrEMBL
	ENSSSCG00040056034	UniProtKB/TrEMBL
	ENSSSCG00060009490	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000100992	ENTREZGENE
	ENSSSCT00000100992.1	UniProtKB/TrEMBL
	ENSSSCT00005009096.1	UniProtKB/TrEMBL
	ENSSSCT00015049786.1	UniProtKB/TrEMBL
	ENSSSCT00030063023.1	UniProtKB/TrEMBL
	ENSSSCT00040075929.1	UniProtKB/TrEMBL
	ENSSSCT00060012249.1	UniProtKB/TrEMBL
Gene3D-CATH	Glycogen Phosphorylase B	UniProtKB/TrEMBL
InterPro	UDP_glucos_trans	UniProtKB/TrEMBL
	UDP_glycos_trans_CS	UniProtKB/TrEMBL
KEGG Report	ssc:100516628	UniProtKB/TrEMBL
NCBI Gene	LOC100516628	ENTREZGENE
PANTHER	EG:EG0003.4 PROTEIN-RELATED	UniProtKB/TrEMBL
	UDP-GLUCURONOSYLTRANSFERASE 2B17-RELATED	UniProtKB/TrEMBL
Pfam	UDPGT	UniProtKB/TrEMBL
PROSITE	UDPGT	UniProtKB/TrEMBL
Superfamily-SCOP	UDP-Glycosyltransferase/glycogen phosphorylase	UniProtKB/TrEMBL
UniProt	A0A480QK70	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D0NIX8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D0X336	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1UHF6	ENTREZGENE
UniProt Secondary	A0A8D1UHF6	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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