CRLF3 (cytokine receptor like factor 3)

Gene: CRLF3 (cytokine receptor like factor 3) Sus scrofa

Analyze

Symbol:

CRLF3

Name:

cytokine receptor like factor 3

RGD ID:

14175580

Description:

ENCODES a protein that exhibits identical protein binding (inferred); INVOLVED IN negative regulation of cell growth (inferred); negative regulation of G1/S transition of mitotic cell cycle (inferred); positive regulation of DNA-templated transcription (inferred); ASSOCIATED WITH cerebral palsy (ortholog); Developmental Disabilities (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (inferred); cytosol (inferred); plasma membrane (inferred)

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

cytokine receptor-like factor 3

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	42,933,445 - 42,976,348 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	42,933,417 - 42,991,395 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	44,722,179 - 44,777,988 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

cerebral palsy (ISO)

Developmental Disabilities (ISO)

genetic disease (ISO)

neurofibromatosis 1 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

negative regulation of cell growth (IEA)

negative regulation of G1/S transition of mitotic cell cycle (IEA)

positive regulation of DNA-templated transcription (IEA)

positive regulation of receptor signaling pathway via JAK-STAT (IEA)

positive regulation of transcription by RNA polymerase II (IEA)

Cellular Component

cytoplasm (IEA)

cytosol (IEA)

nucleus (IBA)

plasma membrane (IEA)

Molecular Function

DNA binding (IBA)

identical protein binding (IEA)

protein binding (ISO)

References

Additional References at PubMed

PMID:14681463	PMID:17145712	PMID:22301074

Genomics

Comparative Map Data

CRLF3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	42,933,445 - 42,976,348 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	42,933,417 - 42,991,395 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	44,722,179 - 44,777,988 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CRLF3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	30,782,684 - 30,824,692 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	30,769,388 - 30,824,692 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	29,109,702 - 29,151,710 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	26,133,828 - 26,175,904 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	17	26,133,827 - 26,175,817	NCBI
Celera	17	26,031,854 - 26,073,912 (-)	NCBI		Celera
Cytogenetic Map	17	q11.2	NCBI
HuRef	17	25,319,439 - 25,362,228 (-)	NCBI		HuRef
CHM1_1	17	29,172,304 - 29,214,372 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	17	31,727,662 - 31,770,401 (-)	NCBI		T2T-CHM13v2.0

Crlf3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	79,937,319 - 79,971,976 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	79,937,319 - 79,971,817 (-)	Ensembl		GRCm39 Ensembl
GRCm38	11	80,046,493 - 80,081,153 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	80,046,493 - 80,080,991 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	79,860,001 - 79,894,457 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	79,862,694 - 79,897,152 (-)	NCBI		MGSCv36	mm8
Celera	11	89,682,654 - 89,717,062 (-)	NCBI		Celera
Cytogenetic Map	11	B5	NCBI
cM Map	11	47.43	NCBI

Crlf3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	65,521,296 - 65,559,162 (-)	NCBI		GRCr8
mRatBN7.2	10	65,024,228 - 65,060,746 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	65,023,388 - 65,060,670 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	69,652,664 - 69,688,999 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	69,158,007 - 69,194,333 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	64,621,744 - 64,657,888 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	67,383,664 - 67,401,836 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	67,383,900 - 67,401,836 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	67,041,460 - 67,060,706 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.1	13	87,889,612 - 87,889,724 (-)	NCBI
Celera	10	63,990,583 - 64,026,881 (-)	NCBI		Celera
Cytogenetic Map	10	q25	NCBI

Crlf3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955481	6,928,549 - 6,955,733 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955481	6,928,549 - 6,955,371 (-)	NCBI	ChiLan1.0	ChiLan1.0

CRLF3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	33,696,368 - 33,750,787 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	35,576,993 - 35,629,875 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	26,015,224 - 26,057,668 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	25,523,472 - 25,545,460 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	25,523,472 - 25,545,460 (+)	Ensembl	panpan1.1		panPan2

CRLF3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	40,933,398 - 40,977,819 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	40,933,417 - 40,989,550 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	40,092,067 - 40,137,736 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	41,750,324 - 41,796,063 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	41,750,283 - 41,796,058 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	40,535,736 - 40,581,812 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	40,830,568 - 40,875,813 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	40,905,508 - 40,950,991 (+)	NCBI		UU_Cfam_GSD_1.0

Crlf3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	39,997,165 - 40,039,007 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936538	2,877,564 - 2,916,925 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936538	2,877,564 - 2,916,952 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CRLF3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	25,485,440 - 25,533,769 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666075	4,530,840 - 4,584,224 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Crlf3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624875	4,489,767 - 4,530,794 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in CRLF3
2689 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	hemolymphoid system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system
High
Medium	8	2		5		4		1	3
Low	2	2	3		2	19	2	2
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001244329	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005669062	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021066135	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000080	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK235863	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK343440	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK347563	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK351417	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CJ019492	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU915522	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DB787462	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FP089481	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GACC01000420	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01051821	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSSCT00000019311 ⟹ ENSSSCP00000018798

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	12	42,933,467 - 42,976,348 (+)	Ensembl

RefSeq Acc Id:

ENSSSCT00000065086 ⟹ ENSSSCP00000050203

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	12	42,933,394 - 42,983,158 (+)	Ensembl

RefSeq Acc Id:

ENSSSCT00000090486 ⟹ ENSSSCP00000062239

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	12	42,933,445 - 42,975,150 (+)	Ensembl

RefSeq Acc Id:

NM_001244329 ⟹ NP_001231258

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	12	42,933,445 - 42,976,358 (+)	NCBI

Sequence:

show sequence

CACAGCCGACTGCTCGGCGGCGCCCCGGACCGTCGGGAACCGCGCCCGCAGCCGCCGGCCGCGC
GGCCGGATTAGAGGGCGATGGATCTGGAACCCGAGCTGCTGCTGCAGGAGGCCCGCGAGAACGT
GGAGGCGGCGCAGAGCTACCGGCGGGAGCTGGGCCATAGGCTGCAGGGACTGCAGGAGGCGCGG
AGGCAGATCAAAGAGAGTGCATCCCAGACAAGAGATGTCCTCAAACAGCATTTTAATGATTTAA
AGGGAACCCTGGGGAAGCTCCTGGATGAGCGATTGGTGACCCTTTTGCAAGAGGTGGACGCCAT
TGAACAGGAGACCATTAAGCCACTAGATGACTGCCAGAAGCTGATAGAGCATGGAGTTAACACT
GCAGAGGACCTCGTCCAAGAAGGTGAGATCGCCATTCTGGGTGGTGTAGGAGAACAAAATGAAA
AACTCTGGAACTTTACCAAAAAAGCCTCCCACATCCAGCTGGACAGCTTACCAGAAGTGCCTTT
ACTGGTTGATGTGCCTTGTTTATCTGCCCAGTTGGATGATTCAATTCTTAACATAGTGAAAGAC
CACATTTTCAAGCATGGAACAGTAGCATCTCGCCCACCAGTACAGATAGAAGAATTAGTAGAAA
AACCTGGAGGCATCATCGTACGATGGTGTAAGGTGGACGACGACTTTACAGCCCAAGATTACAG
GCTCCAGTTCCGGAAATGTACTTCCAGTCACTTTGAGGATGTGTACGTGGGCTCGGAAACTGAG
TTCATCGTGTTGCACATAGACCCCAACGTGGACTACCAGTTCCGGGTCTGCGCCCGAGGGGACG
GCCGGCAGGAGTGGAGCCCTTGGAGCGTCCCCCAGACAGGCCATTCCACGCTGGTGCCGCACGA
GTGGACAGCTGGCTTCGAGGGGTACAGTCTGAGCAGCCGAAGAAACATAGCGCTCCGCAACGAT
GCCGAGTCCTCGGGCGTCCTCTACTCCAGCGCCCCCACTTACTTCTGTGGGCAGACGCTGACCT
TCAGGGTTGAAACTGTGGGACAACCAGACAGAAGAGACAGTCTGGGAGTGTGTGCAGAAAAGCA
GAATGGGTATGACTCTCTGCAGCGGGATCAAGCCGTGTGCATTAGCACAAATGGTGCAGTTTTT
GTAAATGGAAAAGAAATGACTAATCAGTTGCCCGCAGTTACTTCTGGGTCCACTGTCACATTTG
ACATTGAAGCTGTGACTCTAGGATCCACCAATAATAACGAAGGCGGAAACTTCAAGCTTCGAGT
AACTATTAGCTCAAATAACAGAGAAGTGGTGTTTGATTGGTTGCTCGATCAGTCTTGTGGTTCT
CTTTACTTTGGATGCTCATTTTTCTACCCTGGGTGGAAAGTGTTGGTGTTCTAGATTTTCCGAC
GATTGGTTTCGGTTTGCAGGGGTTTTGTAAAGCTGGCCTCAGTCCCATGTAGTTGTCATTGATT
TTAAAAATGGATAGATTCATCTCTCACTTAAGCCATTGGAAACAAATTATTTACTGGATTTATT
TTAGACTGTCTTAGCAGTGAGAGGCTTGAATGTTGTGGATAAAACATCTTATTTTTAGCGTCGT
GTTCATTGGAATATCCCATTACAATAAAAACCAAATTGCCTTTTAAAGTGTGAGGAGATACAGA
GCGCTCTCTGTGTACCCTTCCCCTGTATTTCTTTTTAAAGTTGGTTATGGGAACAGGTAACGTA
ACATCGTTGTATTAAATCTCCATCTTTTAAAGATCCAAGACTCTAGAAAGAAACCGCAGGAAGA
GACCAGGTAGGAGGTGGCTACCGTGTCCGCTGTATTATACGCTCACTTGTGTGTTCTCCACAGG
AGTGTTGAATTTGCTCTCCATATTCAGGGATTTGTAAGCAGTATTGAATTTTAGCTCTTGGTCA
GGAATCTTGAAGTCCCCAAAGCATGGTGATGTTTGCATTTTTAGAAATGACTGAGCAGATGTCT
ACAGTAGGCAGAGTCTTTTCTTTTGTGCTTTCCTTGCAATTTGATTCATGATGGGCTAGAGGGT
TTTGCCAGGGTTAAACTCCTTCTGGAGGAGGTATGCCCAGCGGTGTTAGCCATTTCCCGGCTGT
GAAAGGTGCGCAGGTGCGTCTCCCGCCTCAGCCGGGTGCGCGTTGCCCTTGGCAGGGGCTGAGC
TGCAGTCCTGTTTTACGTCAGTTTCGTAAGTGGTCTTTCCCTGGACCAAACACACAGAGGGTAA
CTACTTGACCTATTTTGGGGGAAACTTAAATTTGTTGAAAATATTTATTTGAAGGGCTTAACTT
CGTATGTGAAAATGATTATCTGAACTTGCTATATACCAGCCTAAGATCTTTCTCTTTAATGTGA
ATGTTTTTTTTTTTTTTTTCATTTTTAACAGTAGAAAAGTGGAAAAGCAAGTTTGATATTTTTG
TAAGATAATTTATTGGGGGATTTCAGATTCCCTGTTAGACAATCATGACCTTCCTCCCCTTGCC
TTTTGATAAATACGTAAACTGTTTGTCACTTGTTTAGTGATTAAGAAGATGTGCTAGAATTTAG
ATGCCTTGTCCAGCTGTCTGAAACCAAATAAAAAACTAAACGTTATA

hide sequence

RefSeq Acc Id:

XM_005669062 ⟹ XP_005669119

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	12	42,933,420 - 42,991,395 (+)	NCBI

Sequence:

show sequence

GGCGGTGCTTCCGCCTGCGCGTGGCCACAGCCGACTGCTCGGCGGCGCCCCGGACCGTCGGGAA
CCGCGCCCGCAGCCGCCGGCCGCGCGGCCGGATTAGAGGGCGATGGATCTGGAACCCGAGCTGC
TGCTGCAGGAGGCCCGCGAGAACGTGGAGGCGGCGCAGAGCTACCGGCGGGAGCTGGGCCATAG
GCTGAAGGGACTGCAGGAGGCGCGGAGGCAGATCAAAGAGAGTGCATCCCAGACAAGAGATGTC
CTCAAACAGCATTTTAATGATTTAAAGGGAACCCTGGGGAAGCTCCTGGATGAGCGATTGGTGA
CCCTTTTGCAAGAGGTGGACGCCATTGAACAGGAGACCATTAAGCCACTAGATGACTGCCAGAA
GCTGATAGAGCATGGAGTTAACACTGCAGAGGACCTCGTCCAAGAAGGTGAGATCGCCATTCTG
GGTGGTGTAGGAGAACAAAATGAAAAACTCTGGAACTTTACCAAAAAAGCCTCCCACATCCAGC
TGGACAGCTTACCAGAAGTGCCTTTACTGGTTGATGTGCCTTGTTTATCTGCCCAGTTGGATGA
TTCAATTCTTAACATAGTGAAAGACCACATTTTCAAGCATGGAACAGTAGCATCTCGCCCACCA
GTACAGATAGAAGAATTAGTAGAAAAACCTGGAGGCATCATCGTACGATGGTGTAAGGTGGACG
ACGACTTTACAGCCCAAGATTACAGGCTCCAGTTCCGGAAATGTACTTCCAGTCACTTTGAGGA
TGTGTACGTGGGCTCGGAAACTGAGTTCATCGTGTTGCACATAGACCCCAACGTGGACTACCAG
TTCCGGGTCTGCGCCCGAGGGGACGGCCGGCAGGAGTGGAGCCCTTGGAGCGTCCCCCAGACAG
GCCATTCCACGCTGGTGCCGCACGAGTGGACAGCTGGCTTCGAGGGGTACAGTCTGAGCAGCCG
AAGAAACATAGCGCTCCGCAACGATGCCGAGTCCTCGGGCGTCCTCTACTCCAGCGCCCCCACT
TACTTCTGTGGGCAGACGCTGACCTTCAGGGTTGAAACTGTGGGACAACCAGACAGAAGAGACA
GTCTGGGAGTGTGTGCAGAAAAGCAGAATGGGTATGACTCTCTGCAGCGGGATCAAGCCGTGTG
CATTAGCACAAATGGAAAAGTCTGCAGCTGTTCTGATGCCTATTCATTTGTATGAGCCATTCAG
GATCTTTTTCATCTTCACTATCTACTTCCATTTCTTGTGGACGGAGAGGTAAACAAGTATCACT
ATGGAAATACAGACGATTGTGTCCACTACTGTATGTTCGTTGCTGTTCCACTTCTCCATCTTCG
GATTCAAGAAATTCAGACATGCTTGCTTTTGTTCGTTTTGGCCTAATGGAAAGAAATGCTGACG
TAATGTTAAGTAACACAGAGAAGGCTCTTTATATTTCACATCCGTCAAATGGAGTACATTCTTT
CCTTACAGGTTTCTACCTAGGTATGCACAAAACTTCCACTGGGAGACTTCTTTAATCCTCCTGT
CTATAAGCACTAGGGCAGGAGCGACGTTAACAACACAGAAAAAAGCTGAAAGGAGAAGTGAGAA
AACTTCTATAGAAATAGGAGTCAGGGAGGGTTATAAGGCAGTATACCACTCCCAAGACTTAGCT
AATACTGAAAGAAGGGGTCCCACCTAGAGAGTAGCCTTGTCTGGCTTCCCTTTATTCCTCCAAC
ATCAGTACAAGTCAGAGAATAAACTTGTTGTGTGACCTTTTTACCTACCTGCACACTAGAATGT
GTGTGATAGGTGTTCTCTTTACTGGTCCATTGCGACTAAAAGCAAATCCAGGTTGGCGATGAAT
ATCCTGAGGATTTCCTGCATAGGAGCCATCATAACACTCGTTGATAGATACATCTATCCTAGCA
CCTTTTGGATGATACTGAAACAAAAAATAGCAAGGTGTTTAGGAAAAGAAAATATTAATTATCC
TACTCTAAATACCTACCCCTCCAATTTAATTAATTAAAAAGTATTTGTGGGTTCTTAATGTTTG
GAAAACTAAAGTAAGCCAGGAATACCAGCATGGTGAACAGGAAGTCAGGAGACCTGAGGTCAAA
AAGATTTGTGTATTTAAAATCCTGGCTGTGCCATTTATTAGCTCGGTAACTTCGTAAGCTTAAT
TCCTGTCTGAGCAAGGATAAGGAAATTAATTATCACTTAATTAATCACTTAATTCAAAGAACTG
GTGTGAGGATTATGTGAATCAATATAGGTACACTATGCAAATATATGTAAATCCTGAATCATTC
ATTGTAATTCATGAACACAGCATTCCAAATGGAAAAATTTTGGTATATTCTGCACAAAGTACAA
TTTCTCTTTCCTTTCCTTTTTGGCTGCACCTACAGCATATGGGAATTCCTAGGTCAGAGATCAA
ACCTGCACACTGCAGTAACCAAAGCCATAGCAGTGGCAATACCAGATCCTTAACCAACTGAGGC
ACAAGGGAACTCCCAAAGTACAATTTATGAAAGTCAAATTGTTTTATAATGTATGAGTTCAAAA
GACTGAAGTTACTTACAACATAATTGAAGATAAATCTGCTATGGCAGAGTTTAAGATGCTTGAG
TAAGCTATAAAGTTTGCGGCAATTCAGAGTGCACCAAGGGCAATGTAGGTCATCTCTTGCTTCA
GTTTGTTGTCTTGTGTTGTTGTTATAAAGGAACTTTAAAAGTAACAGAAAACAAAAACAGCAAA
TCTCCAACTTGCATATCTCAAGATATTTTGTTTCAATATCACCTTTAAAAATAGTTAAAACAAT
TTAAAAGAAAAATCAAGCCAGAGGCATTCTTTTTAATTAAATATGCCAAAACATTTTAGATATA
ACATGCAAAACAAAGGCATCTCATGATTATGTAAAAACAAGAATCAGTCATGTTTACCTGATAA
AATATTCTTAATTTTTGTCGGTTTTCATTAGAAGTATCTTTTCTTGTTTGTAGGTCTGTAGTCA
ATGATTCTTTAACAGCTGAAAACATATACTTTAATGAAAATATTTGCTTTTAAAAGTGAAATAA
CTATCTTGTGAAAATAATTAAACAATAAAGGTTTCTCAAAATTCTTCTTGTGTTTTTAACACTC
TCAATCCCCTAAATCAGCAACCCTAATGAGCTATTAAGGTCCTTATTGGCAGGAGCCATATTTT
CCCTTTAACAACCAGAGTCTATGTCCTAAAACATTATAAAAATAGCCAATTATATGTAGTCACG
GTAATTTTTATAATGTTTTAATTTTAAGCACTTTGAGGTCAGAGTGTGGGTTTTTTTTTTTTTT
TTATTAATTTATCACACCTGTAGTTGTACAATGATCAGAGTGTGGTTTTGATTGGTCTTTGTAT
TCCCACTGTACAGCAGTGAAGAAGACATCAAAATGCTGGCTTAACAGAAATAAAAATGATTATA
TTAACAATCACTCCAA

hide sequence

RefSeq Acc Id:

XM_021066135 ⟹ XP_020921794

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	12	42,933,417 - 42,976,356 (+)	NCBI

Sequence:

show sequence

CGGGGCGGTGCTTCCGCCTGCGCGTGGCCACAGCCGACTGCTCGGCGGCGCCCCGGACCGTCGG
GAACCGCGCCCGCAGCCGCCGGCCGCGCGGCCGGATTAGAGGGCGATGGATCTGGAACCCGAGC
TGCTGCTGCAGGAGGCCCGCGAGAACGTGGAGGCGGCGCAGAGCTACCGGCGGGAGCTGGGCCA
TAGGCTGAAGGGACTGCAGGAGGCGCGGAGGCAGATCAAAGAGAGTGCATCCCAGACAAGAGAT
GTCCTCAAACAGCATTTTAATGATTTAAAGGGAACCCTGGGGAAGCTCCTGGATGAGCGATTGG
TGACCCTTTTGCAAGAGGTGGACGCCATTGAACAGGAGACCATTAAGCCACTAGATGACTGCCA
GAAGCTGATAGAGCATGGAGTTAACACTGCAGAGGACCTCGTCCAAGAAGGTGAGATCGCCATT
CTGGGTGGTGTAGGAGAACAAAATGAAAAACTCTGGAACTTTACCAAAAAAGCCTCCCACATCC
AGCTGGACAGCTTACCAGAAGTGCCTTTACTGGTTGATGTGCCTTGTTTATCTGCCCAGTTGGA
TGATTCAATTCTTAACATAGTGAAAGACCACATTTTCAAGCATGGAACAGTAGCATCTCGCCCA
CCAGTACAGATAGAAGAATTAGTAGAAAAACCTGGAGGCATCATCGTACGATGGTGTAAGGTGG
ACGACGACTTTACAGCCCAAGATTACAGGCTCCAGTTCCGGAAATGTACTTCCAGTCACTTTGA
GGATGTGTACGTGGGCTCGGAAACTGAGTTCATCGTGTTGCACATAGACCCCAACGTGGACTAC
CAGTTCCGGGTCTGCGCCCGAGGGGACGGCCGGCAGGAGTGGAGCCCTTGGAGCGTCCCCCAGA
CAGGCCATTCCACGCTGGTGCCGCACGAGTGGACAGCTGGCTTCGAGGGGTACAGTCTGAGCAG
CCGAAGAAACATAGCGCTCCGCAACGATGCCGAGTCCTCGGGCGTCCTCTACTCCAGCGCCCCC
ACTTACTTCTGTGGGCAGACGCTGACCTTCAGGGTTGAAACTGTGGGACAACCAGACAGAAGAG
ACAGTCTGGGAGTGTGTGCAGAAAAGCAGAATGGGTATGACTCTCTGCAGCGGGATCAAGCCGT
GTGCATTAGCACAAATGGTGCAGTTTTTGTAAATGGAAAAGAAATGACTAATCAGTTGCCCGCA
GTTACTTCTGGGTCCACTGTCACATTTGACATTGAAGCTGTGACTCTAGGATCCACCAATAATA
ACGAAGGCGGAAACTTCAAGCTTCGAGTAACTATTAGCTCAAATAACAGAGAAGTGGTGTTTGA
TTGGTTGCTCGATCAGTCTTGTGGTTCTCTTTACTTTGGATGCTCATTTTTCTACCCGGGTGGA
AAGTGTTGGTGTTCTAGATTTTCCGACGATTGGTTTCGGTTTGCAGGGGTTTTGTAAAGCTGGC
CTCAGTCCCATGTAGTTGTCATTGATTTTAAAAATGGATAGATTCATCTCTCACTTAAGCCATG
GAAACAAATTATTTACTGGATTTATTTTAGACTGTCTTAGCAGTGAGAGGCTTGAATGTTGTGG
ATAAAACATCTTATTTTTAGCGTCGTGTTCATTGGAATATCCCATTACAATAAAAACCAAATTG
CCTTTTAAAGTGTGAGGAGATACAGAGCGCTCTCTGTGTACCCTTCCCCTGTATTTCTTTTTAA
AGTTGGTTATGGGAACAGGTAACGTAACATCGTTGTATTAAATCTCCATCTTTTAAAGATCCAA
GACTCTAGAAAGAAACCGCAGGAAGAGACCAGGTAGGAGGTGGCTACCGTGTCCGCTGTATTAT
ACGCTCACTTGTGTGTTCTCCACAGGAGTGTTGAATTTGCTCTCCATATTCAGGGATTTGTAAG
CAGTATTGAATTTTAGCTCTTGGTCAGGAATCTTGAAGTCCCCAAAGCATGGTGATGTTTGCAT
TTTTAGAAATGACTGAGCAGATGTCTACAGTAGGCAGAGTCTTTTCTTTTGTGCTTTCCTTGCA
ATTTGATTCATGATGGGCTAGAGGGTTTTGCCAGGGTTAAACTCCTTCTGGAGGAGGTATGCCC
AGCGGTGTTAGCCATTTCCCGGCTGTGAAAGGTGCGCAGGTGCGTCTCCCGCCTCAGCCGGGTG
CGCGTTGCCCTTGGCAGGGGCTGAGCTGCAGTCCTGTTTTACGTCAGTTTCGTAAGTGGTCTTT
CCCTGGACCAAACACACAGAGGGTAACTACTTGACCTATTTTGGGGGAAACTTAAATTTGTTGA
AAATATTTATTTGAAGGGCTTAACTTCGTATGTGAAAATGATTATCTGAACTTGCTATATACCA
GCCTAAGATCTTTCTCTTTAATGTGAATGTTTTTTTTTTTTTTTTCATTTTTAACAGTAGAAAA
GTGGAAAAGCAAGTTTGATATTTTTGTAAGATAATTTATTGGGGGATTTCAGATTCCCTGTTAG
ACAATCATGACCTTCCTCCCCTTGCCTTTTGATAAATACGTAAACTGTTTGTCACTTGTTTAGT
GATTAAGAAGATGTGCTAGAATTTAGATGCCTTGTCCAGCTGTCTGAAACCAAATAAAAAACTA
AACGTTA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001231258	(Get FASTA)	NCBI Sequence Viewer
	XP_005669119	(Get FASTA)	NCBI Sequence Viewer
	XP_020921794	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000018798
	ENSSSCP00000018798.4
	ENSSSCP00000062239
	ENSSSCP00000062239.1
	ENSSSCP00015003899.1
	ENSSSCP00025036882.1
	ENSSSCP00025036943.1
	ENSSSCP00025037016.1
	ENSSSCP00025037081.1
	ENSSSCP00025037179.1
	ENSSSCP00025037229.1
	ENSSSCP00025037297.1
	ENSSSCP00030039951.1
	ENSSSCP00030039967.1
	ENSSSCP00030039985.1
	ENSSSCP00030040000.1
	ENSSSCP00030040019.1
	ENSSSCP00030040025.1
	ENSSSCP00030040033.1
	ENSSSCP00035040472.1
	ENSSSCP00035040481.1
	ENSSSCP00035040493.1
	ENSSSCP00035040509.1
	ENSSSCP00035040516.1
	ENSSSCP00035040532.1
	ENSSSCP00040037605.1
	ENSSSCP00040037667.1
	ENSSSCP00040037739.1
	ENSSSCP00040037782.1
	ENSSSCP00040037829.1
	ENSSSCP00045028854.1
	ENSSSCP00045028955.1
	ENSSSCP00045029097.1
	ENSSSCP00050029185.1
	ENSSSCP00050029190.1
	ENSSSCP00050029197.1
	ENSSSCP00050029199.1
	ENSSSCP00050029204.1
	ENSSSCP00050029205.1
	ENSSSCP00050029207.1
	ENSSSCP00055009304.1
	ENSSSCP00055009345.1
	ENSSSCP00055009384.1
	ENSSSCP00055009402.1
	ENSSSCP00055009429.1
	ENSSSCP00065034302.1
	ENSSSCP00065034305.1
	ENSSSCP00065034307.1
	ENSSSCP00065034313.1
	ENSSSCP00065034315.1
	ENSSSCP00070015515.1
	ENSSSCP00070015527.1
	ENSSSCP00070015536.1
	ENSSSCP00070015544.1
GenBank Protein	JAA74164	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_020921794 ⟸ XM_021066135
- Peptide Label:	isoform X1
- UniProtKB:	F1RKV7 (UniProtKB/TrEMBL), A0A4X1THZ8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDLEPELLLQEARENVEAAQSYRRELGHRLKGLQEARRQIKESASQTRDVLKQHFNDLKGTLGK LLDERLVTLLQEVDAIEQETIKPLDDCQKLIEHGVNTAEDLVQEGEIAILGGVGEQNEKLWNFT KKASHIQLDSLPEVPLLVDVPCLSAQLDDSILNIVKDHIFKHGTVASRPPVQIEELVEKPGGII VRWCKVDDDFTAQDYRLQFRKCTSSHFEDVYVGSETEFIVLHIDPNVDYQFRVCARGDGRQEWS PWSVPQTGHSTLVPHEWTAGFEGYSLSSRRNIALRNDAESSGVLYSSAPTYFCGQTLTFRVETV GQPDRRDSLGVCAEKQNGYDSLQRDQAVCISTNGAVFVNGKEMTNQLPAVTSGSTVTFDIEAVT LGSTNNNEGGNFKLRVTISSNNREVVFDWLLDQSCGSLYFGCSFFYPGGKCWCSRFSDDWFRFA GVL hide sequence

RefSeq Acc Id:	XP_005669119 ⟸ XM_005669062
- Peptide Label:	isoform X2
- UniProtKB:	A0A480WLG1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDLEPELLLQEARENVEAAQSYRRELGHRLKGLQEARRQIKESASQTRDVLKQHFNDLKGTLGK LLDERLVTLLQEVDAIEQETIKPLDDCQKLIEHGVNTAEDLVQEGEIAILGGVGEQNEKLWNFT KKASHIQLDSLPEVPLLVDVPCLSAQLDDSILNIVKDHIFKHGTVASRPPVQIEELVEKPGGII VRWCKVDDDFTAQDYRLQFRKCTSSHFEDVYVGSETEFIVLHIDPNVDYQFRVCARGDGRQEWS PWSVPQTGHSTLVPHEWTAGFEGYSLSSRRNIALRNDAESSGVLYSSAPTYFCGQTLTFRVETV GQPDRRDSLGVCAEKQNGYDSLQRDQAVCISTNGKVCSCSDAYSFV hide sequence

RefSeq Acc Id:

NP_001231258 ⟸ NM_001244329

- UniProtKB:

M3VK18 (UniProtKB/TrEMBL), A0A8D1FN68 (UniProtKB/TrEMBL), A0A480UF13 (UniProtKB/TrEMBL), A0A4X1TK44 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MDLEPELLLQEARENVEAAQSYRRELGHRLQGLQEARRQIKESASQTRDVLKQHFNDLKGTLGK
LLDERLVTLLQEVDAIEQETIKPLDDCQKLIEHGVNTAEDLVQEGEIAILGGVGEQNEKLWNFT
KKASHIQLDSLPEVPLLVDVPCLSAQLDDSILNIVKDHIFKHGTVASRPPVQIEELVEKPGGII
VRWCKVDDDFTAQDYRLQFRKCTSSHFEDVYVGSETEFIVLHIDPNVDYQFRVCARGDGRQEWS
PWSVPQTGHSTLVPHEWTAGFEGYSLSSRRNIALRNDAESSGVLYSSAPTYFCGQTLTFRVETV
GQPDRRDSLGVCAEKQNGYDSLQRDQAVCISTNGAVFVNGKEMTNQLPAVTSGSTVTFDIEAVT
LGSTNNNEGGNFKLRVTISSNNREVVFDWLLDQSCGSLYFGCSFFYPGWKVLVF

hide sequence

RefSeq Acc Id:

ENSSSCP00000018798 ⟸ ENSSSCT00000019311

RefSeq Acc Id:

ENSSSCP00000050203 ⟸ ENSSSCT00000065086

RefSeq Acc Id:

ENSSSCP00000062239 ⟸ ENSSSCT00000090486

Protein Domains

Fibronectin type-III

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000017743	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00015007127	UniProtKB/TrEMBL
	ENSSSCG00025061924	UniProtKB/TrEMBL
	ENSSSCG00030061948	UniProtKB/TrEMBL
	ENSSSCG00035071209	UniProtKB/TrEMBL
	ENSSSCG00040062964	UniProtKB/TrEMBL
	ENSSSCG00045024405	UniProtKB/TrEMBL
	ENSSSCG00050050015	UniProtKB/TrEMBL
	ENSSSCG00055006054	UniProtKB/TrEMBL
	ENSSSCG00065057700	UniProtKB/TrEMBL
	ENSSSCG00070009630	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000019311	ENTREZGENE
	ENSSSCT00000019311.4	UniProtKB/TrEMBL
	ENSSSCT00000090486	ENTREZGENE
	ENSSSCT00000090486.2	UniProtKB/TrEMBL
	ENSSSCT00015009818.1	UniProtKB/TrEMBL
	ENSSSCT00025084799.1	UniProtKB/TrEMBL
	ENSSSCT00025084983.1	UniProtKB/TrEMBL
	ENSSSCT00025085181.1	UniProtKB/TrEMBL
	ENSSSCT00025085335.1	UniProtKB/TrEMBL
	ENSSSCT00025085531.1	UniProtKB/TrEMBL
	ENSSSCT00025085646.1	UniProtKB/TrEMBL
	ENSSSCT00025085797.1	UniProtKB/TrEMBL
	ENSSSCT00030086621.1	UniProtKB/TrEMBL
	ENSSSCT00030086657.1	UniProtKB/TrEMBL
	ENSSSCT00030086697.1	UniProtKB/TrEMBL
	ENSSSCT00030086720.1	UniProtKB/TrEMBL
	ENSSSCT00030086761.1	UniProtKB/TrEMBL
	ENSSSCT00030086775.1	UniProtKB/TrEMBL
	ENSSSCT00030086793.1	UniProtKB/TrEMBL
	ENSSSCT00035096214.1	UniProtKB/TrEMBL
	ENSSSCT00035096228.1	UniProtKB/TrEMBL
	ENSSSCT00035096250.1	UniProtKB/TrEMBL
	ENSSSCT00035096279.1	UniProtKB/TrEMBL
	ENSSSCT00035096290.1	UniProtKB/TrEMBL
	ENSSSCT00035096319.1	UniProtKB/TrEMBL
	ENSSSCT00040085861.1	UniProtKB/TrEMBL
	ENSSSCT00040085996.1	UniProtKB/TrEMBL
	ENSSSCT00040086114.1	UniProtKB/TrEMBL
	ENSSSCT00040086191.1	UniProtKB/TrEMBL
	ENSSSCT00040086284.1	UniProtKB/TrEMBL
	ENSSSCT00045041590.1	UniProtKB/TrEMBL
	ENSSSCT00045041735.1	UniProtKB/TrEMBL
	ENSSSCT00045041907.1	UniProtKB/TrEMBL
	ENSSSCT00050068049.1	UniProtKB/TrEMBL
	ENSSSCT00050068059.1	UniProtKB/TrEMBL
	ENSSSCT00050068071.1	UniProtKB/TrEMBL
	ENSSSCT00050068078.1	UniProtKB/TrEMBL
	ENSSSCT00050068093.1	UniProtKB/TrEMBL
	ENSSSCT00050068095.1	UniProtKB/TrEMBL
	ENSSSCT00050068105.1	UniProtKB/TrEMBL
	ENSSSCT00055011755.1	UniProtKB/TrEMBL
	ENSSSCT00055011812.1	UniProtKB/TrEMBL
	ENSSSCT00055011870.1	UniProtKB/TrEMBL
	ENSSSCT00055011895.1	UniProtKB/TrEMBL
	ENSSSCT00055011932.1	UniProtKB/TrEMBL
	ENSSSCT00065078940.1	UniProtKB/TrEMBL
	ENSSSCT00065078948.1	UniProtKB/TrEMBL
	ENSSSCT00065078951.1	UniProtKB/TrEMBL
	ENSSSCT00065078958.1	UniProtKB/TrEMBL
	ENSSSCT00065078961.1	UniProtKB/TrEMBL
	ENSSSCT00070018673.1	UniProtKB/TrEMBL
	ENSSSCT00070018686.1	UniProtKB/TrEMBL
	ENSSSCT00070018698.1	UniProtKB/TrEMBL
	ENSSSCT00070018705.1	UniProtKB/TrEMBL
Gene3D-CATH	2.60.40.10	UniProtKB/TrEMBL
InterPro	FN3_dom	UniProtKB/TrEMBL
	FN3_sf	UniProtKB/TrEMBL
	Ig-like_fold	UniProtKB/TrEMBL
KEGG Report	ssc:100525951	UniProtKB/TrEMBL
NCBI Gene	CRLF3	ENTREZGENE
PROSITE	FN3	UniProtKB/TrEMBL
Superfamily-SCOP	Apolipoprotein A-I	UniProtKB/TrEMBL
	SSF49265	UniProtKB/TrEMBL
UniProt	A0A480UF13	ENTREZGENE, UniProtKB/TrEMBL
	A0A480WLG1	ENTREZGENE, UniProtKB/TrEMBL
	A0A4X1THZ8	ENTREZGENE, UniProtKB/TrEMBL
	A0A4X1TK44	ENTREZGENE, UniProtKB/TrEMBL
	A0A4X1TK64_PIG	UniProtKB/TrEMBL
	A0A4X1TK93_PIG	UniProtKB/TrEMBL
	A0A5G2QVN6_PIG	UniProtKB/TrEMBL
	A0A8D0STZ0_PIG	UniProtKB/TrEMBL
	A0A8D0TUZ4_PIG	UniProtKB/TrEMBL
	A0A8D0XQQ9_PIG	UniProtKB/TrEMBL
	A0A8D1FN68	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1MSU3_PIG	UniProtKB/TrEMBL
	F1RKV7	ENTREZGENE, UniProtKB/TrEMBL
	M3VK18	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:86999	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar