LOC100624891 (UDP-glucuronosyltransferase 2C1) - Rat Genome Database

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Gene: LOC100624891 (UDP-glucuronosyltransferase 2C1) Sus scrofa
Analyze
Symbol: LOC100624891
Name: UDP-glucuronosyltransferase 2C1
RGD ID: 14172305
Description: ENCODES a protein that exhibits glucuronosyltransferase activity (inferred); glycosyltransferase activity (inferred); UDP-glycosyltransferase activity (inferred); INVOLVED IN steroid metabolic process (ortholog); xenobiotic glucuronidation (ortholog); FOUND IN endoplasmic reticulum (ortholog); nuclear outer membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1866,571,838 - 66,599,191 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2871,105,989 - 71,111,895 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074  


Genomics

Comparative Map Data
LOC100624891
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1866,571,838 - 66,599,191 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2871,105,989 - 71,111,895 (+)NCBISscrofa10.2Sscrofa10.2susScr3
UGT2B28
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38469,280,475 - 69,295,050 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl469,280,475 - 69,295,050 (+)EnsemblGRCh38hg38GRCh38
GRCh37470,146,193 - 70,160,768 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36470,180,806 - 70,195,357 (+)NCBINCBI36Build 36hg18NCBI36
Build 34470,326,976 - 70,341,527NCBI
Celera467,489,536 - 67,504,128 (+)NCBICelera
Cytogenetic Map4q13.2NCBI
HuRef465,944,695 - 65,959,246 (+)NCBIHuRef

Variants

.
Variants in LOC100624891
557 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system renal system
High
Medium 1
Low 2 1
Below cutoff 1

Sequence


Reference Sequences
RefSeq Acc Id: XM_021101409   ⟹   XP_020957068
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1866,571,838 - 66,599,191 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020957068 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000063941.2
  ENSSSCP00000077100
  ENSSSCP00000077100.1
  ENSSSCP00000080480.1
Reference Protein Sequences
RefSeq Acc Id: XP_020957068   ⟸   XM_021101409
- UniProtKB: A0A8W4FE19 (UniProtKB/TrEMBL),   A0A480I073 (UniProtKB/TrEMBL)
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000054715 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000081961.2 UniProtKB/TrEMBL
  ENSSSCT00000098439 ENTREZGENE
  ENSSSCT00000098439.1 UniProtKB/TrEMBL
  ENSSSCT00000101449.1 UniProtKB/TrEMBL
Gene3D-CATH Glycogen Phosphorylase B UniProtKB/TrEMBL
InterPro UDP_glucos_trans UniProtKB/TrEMBL
  UDP_glycos_trans_CS UniProtKB/TrEMBL
NCBI Gene LOC100624891 ENTREZGENE
PANTHER EG:EG0003.4 PROTEIN-RELATED UniProtKB/TrEMBL
  UDP-GLUCURONOSYLTRANSFERASE 2A1-LIKE UniProtKB/TrEMBL
Pfam UDPGT UniProtKB/TrEMBL
PROSITE UDPGT UniProtKB/TrEMBL
Superfamily-SCOP UDP-Glycosyltransferase/glycogen phosphorylase UniProtKB/TrEMBL
UniProt A0A480I073 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2QJ39_PIG UniProtKB/TrEMBL
  A0A8W4FE19 ENTREZGENE, UniProtKB/TrEMBL
  A0A8W4FMA4_PIG UniProtKB/TrEMBL