NUP210L (nucleoporin 210 like) - Rat Genome Database

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Gene: NUP210L (nucleoporin 210 like) Sus scrofa
Analyze
Symbol: NUP210L
Name: nucleoporin 210 like
RGD ID: 14169738
Description: INVOLVED IN Sertoli cell development (ortholog); spermatid development (ortholog); ASSOCIATED WITH GAND syndrome (ortholog); gastrointestinal stromal tumor (ortholog); immunodeficiency 42 (ortholog); FOUND IN membrane (inferred); nuclear pore (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: nuclear pore membrane glycoprotein 210-like; nucleoporin 210kDa-like
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl495,574,108 - 95,698,197 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1495,573,974 - 95,697,196 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24104,491,481 - 104,598,654 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IEA)
nuclear pore  (IBA,IEA)

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
NUP210L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl495,574,108 - 95,698,197 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1495,573,974 - 95,697,196 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24104,491,481 - 104,598,654 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NUP210L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381153,992,690 - 154,155,116 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1153,992,690 - 154,155,116 (-)EnsemblGRCh38hg38GRCh38
GRCh371153,965,166 - 154,127,592 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361152,231,790 - 152,394,216 (-)NCBINCBI36Build 36hg18NCBI36
Build 341150,778,233 - 150,925,401NCBI
Celera1127,036,912 - 127,199,334 (-)NCBICelera
Cytogenetic Map1q21.3NCBI
HuRef1125,327,720 - 125,490,936 (-)NCBIHuRef
CHM1_11155,361,483 - 155,523,936 (-)NCBICHM1_1
T2T-CHM13v2.01153,129,953 - 153,292,344 (-)NCBIT2T-CHM13v2.0
Nup210l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39390,011,445 - 90,119,458 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl390,011,439 - 90,119,355 (+)EnsemblGRCm39 Ensembl
GRCm38390,101,007 - 90,212,151 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl390,104,132 - 90,212,048 (+)EnsemblGRCm38mm10GRCm38
MGSCv37389,908,054 - 90,015,939 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36390,190,094 - 90,297,944 (+)NCBIMGSCv36mm8
Celera390,141,258 - 90,248,934 (+)NCBICelera
Cytogenetic Map3F1NCBI
cM Map339.2NCBI
Nup210l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82177,843,647 - 177,962,975 (+)NCBIGRCr8
mRatBN7.22175,545,999 - 175,665,332 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2175,547,988 - 175,665,332 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2182,694,369 - 182,805,138 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02180,716,758 - 180,827,524 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02175,317,375 - 175,427,719 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02189,453,932 - 189,571,918 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2189,454,340 - 189,571,529 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02208,887,355 - 209,004,828 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42182,328,293 - 182,450,883 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12182,278,398 - 182,400,989 (+)NCBI
Celera2169,486,931 - 169,601,257 (+)NCBICelera
Cytogenetic Map2q34NCBI
Nup210l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955545601,900 - 714,135 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955545601,727 - 714,225 (-)NCBIChiLan1.0ChiLan1.0
NUP210L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2195,678,392 - 95,839,479 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1195,413,629 - 95,574,734 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01129,349,468 - 129,510,688 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11132,977,742 - 133,125,416 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1132,977,876 - 133,125,344 (-)Ensemblpanpan1.1panPan2
NUP210L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1743,068,259 - 43,149,202 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl743,068,341 - 43,161,853 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha742,558,385 - 42,639,551 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0742,938,572 - 43,019,578 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl742,938,907 - 43,019,575 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1742,717,262 - 42,798,244 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0742,770,568 - 42,851,414 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0743,054,663 - 43,135,759 (+)NCBIUU_Cfam_GSD_1.0
Nup210l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505824,711,210 - 24,828,224 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365803,741,725 - 3,858,563 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365803,741,428 - 3,858,563 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NUP210L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1209,671,203 - 9,821,257 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl209,671,482 - 9,815,252 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660389,029,226 - 9,188,852 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nup210l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248853,140,355 - 3,234,360 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in NUP210L
2445 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 1 3 3 4 1 1
Below cutoff 9 3 2 2 18 2 1 2

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000052241   ⟹   ENSSSCP00000033858
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl495,574,108 - 95,698,197 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000088496   ⟹   ENSSSCP00000071623
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl495,574,108 - 95,698,197 (+)Ensembl
RefSeq Acc Id: XM_021089795   ⟹   XP_020945454
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1495,573,974 - 95,697,196 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020945454 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000033858
  ENSSSCP00000033858.3
  ENSSSCP00000071623.2
  ENSSSCP00070047659.1
  ENSSSCP00070047660.1
Reference Protein Sequences
RefSeq Acc Id: XP_020945454   ⟸   XM_021089795
- UniProtKB: A0A4X1W165 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000071623   ⟸   ENSSSCT00000088496
RefSeq Acc Id: ENSSSCP00000033858   ⟸   ENSSSCT00000052241
Protein Domains
BIG2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000038125 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070027951 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000052241 ENTREZGENE
  ENSSSCT00000052241.3 UniProtKB/TrEMBL
  ENSSSCT00000088496.2 UniProtKB/TrEMBL
  ENSSSCT00070056097.1 UniProtKB/TrEMBL
  ENSSSCT00070056098.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.1080 UniProtKB/TrEMBL
InterPro Big_2 UniProtKB/TrEMBL
  Invasin/intimin_cell_adhesion UniProtKB/TrEMBL
  NUP210-like UniProtKB/TrEMBL
NCBI Gene NUP210L ENTREZGENE
PANTHER NUCLEAR PORE MEMBRANE GLYCOPROTEIN 210-LIKE UniProtKB/TrEMBL
  PTHR23019 UniProtKB/TrEMBL
Pfam Big_2 UniProtKB/TrEMBL
SMART BID_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF49373 UniProtKB/TrEMBL
UniProt A0A286ZQW4_PIG UniProtKB/TrEMBL
  A0A4X1W0I4_PIG UniProtKB/TrEMBL
  A0A4X1W165 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2R363_PIG UniProtKB/TrEMBL
VGNC ID VGNC:90978 ENTREZGENE