MIR339-1 (microRNA mir-339-1) - Rat Genome Database

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Gene: MIR339-1 (microRNA mir-339-1) Sus scrofa
Analyze
No known orthologs.
Symbol: MIR339-1 (Ensembl: ssc-mir-339-1)
Name: microRNA mir-339-1 (Ensembl:ssc-mir-339-1)
RGD ID: 14169351
Description: microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: microRNA 339-1; MIR339; ssc-mir-339; ssc-mir-339-1
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3666,918 - 666,997 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13666,918 - 666,997 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23726,710 - 726,789 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
RISC complex  (IEA)

References
Additional References at PubMed
PMID:16381832   PMID:19917043   PMID:20180025   PMID:20433717   PMID:21312241   PMID:24499489   PMID:32757169  


Genomics

Variants

.
Variants in MIR339-1
2 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system hemolymphoid system musculoskeletal system nervous system reproductive system respiratory system
High
Medium 1
Low 6 1 3 1 10 1 2
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000020307
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl3666,918 - 666,997 (-)Ensembl
RefSeq Acc Id: NR_038564
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.13666,918 - 666,997 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000018712 Ensembl, ENTREZGENE
Ensembl Transcript ENSSSCT00000020307 ENTREZGENE
miRBase MI0013149 ENTREZGENE
NCBI Gene MIR339-1 ENTREZGENE
RNAcentral URS00000BEB26 RNACentral
  URS000075B465 RNACentral
  URS000075B5F2 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-02 MIR339-1  microRNA mir-339-1    microRNA 339-1  Symbol and/or name change 5135510 APPROVED