HOXA7 (homeobox A7) - Rat Genome Database

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Gene: HOXA7 (homeobox A7) Sus scrofa
Analyze
Symbol: HOXA7
Name: homeobox A7
RGD ID: 14133964
Description: ENCODES a protein that exhibits DNA binding (inferred); DNA-binding transcription activator activity, RNA polymerase II-specific (inferred); DNA-binding transcription factor activity (inferred); INVOLVED IN anterior/posterior pattern specification (ortholog); embryonic skeletal system morphogenesis (ortholog); negative regulation of keratinocyte differentiation (ortholog); ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog); FOUND IN nuclear membrane (inferred); nucleoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: homeobox protein Hox-A7
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1845,417,203 - 45,419,101 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11845,417,137 - 45,419,113 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21850,047,209 - 50,052,308 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nuclear membrane  (IEA)
nucleoplasm  (IEA)
nucleus  (IBA,IEA)

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
HOXA7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1845,417,203 - 45,419,101 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11845,417,137 - 45,419,113 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21850,047,209 - 50,052,308 (+)NCBISscrofa10.2Sscrofa10.2susScr3
HOXA7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38727,153,716 - 27,156,675 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl727,153,716 - 27,157,936 (-)EnsemblGRCh38hg38GRCh38
GRCh37727,193,335 - 27,196,294 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36727,159,860 - 27,162,821 (-)NCBINCBI36Build 36hg18NCBI36
Build 34726,967,529 - 26,969,536NCBI
Celera727,182,274 - 27,185,235 (-)NCBICelera
Cytogenetic Map7p15.2NCBI
HuRef727,073,747 - 27,076,708 (-)NCBIHuRef
CHM1_1727,193,051 - 27,196,012 (-)NCBICHM1_1
T2T-CHM13v2.0727,289,707 - 27,297,085 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2727,244,510 - 27,247,471 (-)NCBI
Hoxa7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39652,191,471 - 52,198,757 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl652,191,471 - 52,198,834 (-)EnsemblGRCm39 Ensembl
GRCm38652,215,623 - 52,218,573 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl652,214,491 - 52,221,854 (-)EnsemblGRCm38mm10GRCm38
MGSCv37652,165,622 - 52,168,572 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36652,145,206 - 52,148,156 (-)NCBIMGSCv36mm8
Celera652,737,261 - 52,740,211 (-)NCBICelera
Cytogenetic Map6B3NCBI
cM Map625.4NCBI
Hoxa7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8482,646,342 - 82,652,449 (-)NCBIGRCr8
mRatBN7.2481,315,730 - 81,317,629 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl481,314,625 - 81,317,659 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx486,537,519 - 86,539,409 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0482,312,905 - 82,314,795 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0480,740,052 - 80,741,942 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0482,184,299 - 82,187,890 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl482,183,196 - 82,186,190 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04146,851,130 - 146,854,687 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4480,515,622 - 80,517,521 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera476,206,442 - 76,208,341 (-)NCBICelera
Cytogenetic Map4q24NCBI
Hoxa7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541028,847,893 - 28,851,062 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541028,848,029 - 28,851,069 (-)NCBIChiLan1.0ChiLan1.0
HOXA7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2631,982,932 - 31,987,550 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1780,308,768 - 80,310,610 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0727,799,317 - 27,802,492 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1727,397,888 - 27,402,142 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl727,396,898 - 27,402,142 (-)Ensemblpanpan1.1panPan2
HOXA7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11440,327,918 - 40,334,073 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1440,329,127 - 40,330,842 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1439,758,776 - 39,765,091 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01440,266,574 - 40,272,893 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1440,267,783 - 40,269,502 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11440,380,588 - 40,386,885 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01440,065,649 - 40,071,956 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01440,424,253 - 40,430,564 (-)NCBIUU_Cfam_GSD_1.0
Hoxa7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511884,569,675 - 84,572,760 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364783,782,482 - 3,784,361 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364783,782,476 - 3,784,361 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC103226327
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12131,208,988 - 31,215,227 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2131,221,230 - 31,223,278 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
ChlSab1.1 Ensembl2131,212,209 - 31,215,392 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604273,509,101 - 73,524,828 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hoxa7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247393,448,199 - 3,452,717 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247393,448,982 - 3,451,985 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in HOXA7
27 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system hemolymphoid system musculoskeletal system nervous system renal system reproductive system
High
Medium
Low 7 2 2 2 2 2 3
Below cutoff 1 1

Sequence


RefSeq Acc Id: ENSSSCT00000030592   ⟹   ENSSSCP00000024557
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1845,417,203 - 45,419,101 (+)Ensembl
RefSeq Acc Id: XM_021079046   ⟹   XP_020934705
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11845,417,137 - 45,419,113 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020934705   ⟸   XM_021079046
- UniProtKB: A0A8D0V4H0 (UniProtKB/TrEMBL),   I3LKE3 (UniProtKB/TrEMBL),   A0A8D0NFA3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000024557   ⟸   ENSSSCT00000030592
Protein Domains
Homeobox


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000016701 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015034170 UniProtKB/TrEMBL
  ENSSSCG00025074800 UniProtKB/TrEMBL
  ENSSSCG00030000776 UniProtKB/TrEMBL
  ENSSSCG00035060481 UniProtKB/TrEMBL
  ENSSSCG00040002134 UniProtKB/TrEMBL
  ENSSSCG00045015373 UniProtKB/TrEMBL
  ENSSSCG00050058287 UniProtKB/TrEMBL
  ENSSSCG00055019234 UniProtKB/TrEMBL
  ENSSSCG00065022535 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000030592 ENTREZGENE
  ENSSSCT00000030592.4 UniProtKB/TrEMBL
  ENSSSCT00015045289.1 UniProtKB/TrEMBL
  ENSSSCT00025103080.1 UniProtKB/TrEMBL
  ENSSSCT00030001030.1 UniProtKB/TrEMBL
  ENSSSCT00035081161.1 UniProtKB/TrEMBL
  ENSSSCT00040002557.1 UniProtKB/TrEMBL
  ENSSSCT00045026046.1 UniProtKB/TrEMBL
  ENSSSCT00050079457.1 UniProtKB/TrEMBL
  ENSSSCT00055037633.1 UniProtKB/TrEMBL
  ENSSSCT00065029982.1 UniProtKB/TrEMBL
Gene3D-CATH Homeodomain-like UniProtKB/TrEMBL
InterPro Homeobox-like_sf UniProtKB/TrEMBL
  Homeobox_antennapedia UniProtKB/TrEMBL
  Homeobox_Antennapedia_CS UniProtKB/TrEMBL
  Homeobox_CS UniProtKB/TrEMBL
  Homeobox_dom UniProtKB/TrEMBL
  Homeobox_metazoa UniProtKB/TrEMBL
NCBI Gene HOXA7 ENTREZGENE
PANTHER HOMEOBOX PROTEIN HOX UniProtKB/TrEMBL
  HOMEOBOX PROTEIN HOX-A7 UniProtKB/TrEMBL
Pfam Homeodomain UniProtKB/TrEMBL
PRINTS ANTENNAPEDIA UniProtKB/TrEMBL
  HOMEOBOX UniProtKB/TrEMBL
PROSITE ANTENNAPEDIA UniProtKB/TrEMBL
  HOMEOBOX_1 UniProtKB/TrEMBL
  HOMEOBOX_2 UniProtKB/TrEMBL
SMART HOX UniProtKB/TrEMBL
Superfamily-SCOP SSF46689 UniProtKB/TrEMBL
UniProt A0A8D0NFA3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0TGF0_PIG UniProtKB/TrEMBL
  A0A8D0V4H0 ENTREZGENE, UniProtKB/TrEMBL
  I3LKE3 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:88940 ENTREZGENE