LOC100514912 (elongation factor 1-alpha, oocyte form-like) - Rat Genome Database

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Gene: LOC100514912 (elongation factor 1-alpha, oocyte form-like) Sus scrofa
Analyze
No known orthologs.
Symbol: LOC100514912
Name: elongation factor 1-alpha, oocyte form-like
RGD ID: 14133735
Description: ENCODES a protein that exhibits GTP binding (inferred); GTPase activity (inferred); translation elongation factor activity (inferred); INVOLVED IN translation (inferred); translational elongation (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1925,500,470 - 25,503,084 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2928,754,240 - 28,756,842 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Variants

.
Variants in LOC100514912
130 total Variants

Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003129778 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000070 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_003129778   ⟹   XP_003129826
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1925,500,470 - 25,503,084 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_003129826   ⟸   XM_003129778
- UniProtKB: A0A8D0YT16 (UniProtKB/TrEMBL),   F1STM4 (UniProtKB/TrEMBL),   A0A4X1TZT2 (UniProtKB/TrEMBL),   A0A8D1Z424 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
tr-type G


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000034113 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00030064413 UniProtKB/TrEMBL
  ENSSSCG00035012012 UniProtKB/TrEMBL
  ENSSSCG00045023087 UniProtKB/TrEMBL
  ENSSSCG00050016232 UniProtKB/TrEMBL
  ENSSSCG00065048427 UniProtKB/TrEMBL
  ENSSSCG00070012906 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000016299 ENTREZGENE
  ENSSSCT00000016299.5 UniProtKB/TrEMBL
  ENSSSCT00000068105.2 UniProtKB/TrEMBL
  ENSSSCT00000089939.2 UniProtKB/TrEMBL
  ENSSSCT00030090162.1 UniProtKB/TrEMBL
  ENSSSCT00035015123.1 UniProtKB/TrEMBL
  ENSSSCT00045039642.1 UniProtKB/TrEMBL
  ENSSSCT00050022122.1 UniProtKB/TrEMBL
  ENSSSCT00065066251.1 UniProtKB/TrEMBL
  ENSSSCT00070025224.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
  Translation factors UniProtKB/TrEMBL
InterPro EFTu-like_2 UniProtKB/TrEMBL
  G_TR_CS UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  TF_GTP-bd_dom UniProtKB/TrEMBL
  Transl_B-barrel_sf UniProtKB/TrEMBL
  Transl_elong_EF1A/Init_IF2_C UniProtKB/TrEMBL
  Transl_elong_EF1A_euk/arc UniProtKB/TrEMBL
  Transl_elong_EFTu/EF1A_C UniProtKB/TrEMBL
KEGG Report ssc:100514912 UniProtKB/TrEMBL
NCBI Gene LOC100514912 ENTREZGENE
PANTHER ELONGATION FACTOR 1-ALPHA UniProtKB/TrEMBL
  TRANSLATION FACTOR UniProtKB/TrEMBL
Pfam GTP_EFTU UniProtKB/TrEMBL
  GTP_EFTU_D2 UniProtKB/TrEMBL
  GTP_EFTU_D3 UniProtKB/TrEMBL
PRINTS ELONGATNFCT UniProtKB/TrEMBL
PROSITE G_TR_1 UniProtKB/TrEMBL
  G_TR_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF50447 UniProtKB/TrEMBL
  SSF50465 UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
UniProt A0A4X1TZT2 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2QCL5_PIG UniProtKB/TrEMBL
  A0A5G2RBZ6_PIG UniProtKB/TrEMBL
  A0A8D0YT16 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1Z424 ENTREZGENE, UniProtKB/TrEMBL
  F1STM4 ENTREZGENE, UniProtKB/TrEMBL