INTS7 (integrator complex subunit 7) - Rat Genome Database

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Gene: INTS7 (integrator complex subunit 7) Sus scrofa
Analyze
Symbol: INTS7
Name: integrator complex subunit 7
RGD ID: 14118338
Description: INVOLVED IN cellular response to ionizing radiation (inferred); DNA damage checkpoint signaling (inferred); snRNA 3'-end processing (inferred); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); parathyroid carcinoma (ortholog); FOUND IN chromosome (inferred); cytoplasm (inferred); integrator complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9131,275,626 - 131,354,592 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19131,275,530 - 131,364,490 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29144,330,530 - 144,374,834 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
chromosome  (IEA)
cytoplasm  (IEA)
integrator complex  (IBA,IEA)
nuclear body  (IEA)
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:30032202  


Genomics

Comparative Map Data
INTS7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9131,275,626 - 131,354,592 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19131,275,530 - 131,364,490 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29144,330,530 - 144,374,834 (-)NCBISscrofa10.2Sscrofa10.2susScr3
INTS7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381211,940,403 - 212,035,557 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1211,940,399 - 212,035,557 (-)EnsemblGRCh38hg38GRCh38
GRCh371212,113,745 - 212,208,899 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361210,181,321 - 210,275,507 (-)NCBINCBI36Build 36hg18NCBI36
Celera1185,341,779 - 185,435,963 (-)NCBICelera
Cytogenetic Map1q32.3ENTREZGENE
HuRef1182,790,784 - 182,886,038 (-)NCBIHuRef
CHM1_11213,386,120 - 213,481,388 (-)NCBICHM1_1
T2T-CHM13v2.01211,186,567 - 211,281,644 (-)NCBIT2T-CHM13v2.0
Ints7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391191,307,652 - 191,355,802 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1191,307,748 - 191,355,800 (+)EnsemblGRCm39 Ensembl
GRCm381191,575,540 - 191,623,690 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1191,575,636 - 191,623,688 (+)EnsemblGRCm38mm10GRCm38
MGSCv371193,399,613 - 193,445,570 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361193,276,395 - 193,323,290 (+)NCBIMGSCv36mm8
Celera1198,526,378 - 198,572,332 (+)NCBICelera
Cytogenetic Map1H6NCBI
cM Map196.51NCBI
Ints7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr813105,686,208 - 105,739,609 (+)NCBIGRCr8
mRatBN7.213103,155,123 - 103,207,953 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl13103,155,090 - 103,208,592 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx13105,675,160 - 105,727,919 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.013107,059,009 - 107,111,770 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.013104,274,080 - 104,326,845 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.013110,257,571 - 110,310,413 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl13110,257,571 - 110,310,413 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.013114,821,472 - 114,873,815 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.413107,641,207 - 107,696,311 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.113107,830,267 - 107,884,967 (+)NCBI
Celera13102,594,374 - 102,646,905 (+)NCBICelera
Cytogenetic Map13q27NCBI
Ints7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554065,299,697 - 5,371,896 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554065,299,696 - 5,371,496 (+)NCBIChiLan1.0ChiLan1.0
INTS7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2137,367,474 - 37,462,976 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1137,331,961 - 37,427,466 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01187,508,066 - 187,603,567 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11192,372,012 - 192,466,510 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1192,372,016 - 192,466,510 (-)Ensemblpanpan1.1panPan2
INTS7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1710,238,809 - 10,323,699 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl710,239,711 - 10,323,611 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha79,816,473 - 9,901,338 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.079,945,253 - 10,030,174 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl79,945,257 - 10,030,159 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.179,867,362 - 9,952,291 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.079,970,424 - 10,055,230 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0710,094,891 - 10,179,712 (-)NCBIUU_Cfam_GSD_1.0
Ints7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934464,149,514 - 64,216,110 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365571,389,728 - 1,457,042 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365571,389,728 - 1,456,397 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
INTS7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12517,485,353 - 17,573,178 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2517,485,316 - 17,574,144 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605518,008,259 - 18,096,226 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ints7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477117,524,459 - 17,612,131 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477117,525,471 - 17,612,260 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in INTS7
4138 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1 3 3 4 2 2
Low 10 3 2 2 19 2 1 1
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000039522   ⟹   ENSSSCP00000054008
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl9131,275,654 - 131,354,592 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000039891   ⟹   ENSSSCP00000047528
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl9131,275,626 - 131,354,592 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000096567   ⟹   ENSSSCP00000078330
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl9131,275,643 - 131,354,588 (+)Ensembl
RefSeq Acc Id: XM_021063859   ⟹   XP_020919518
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.19131,275,530 - 131,354,597 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021063860   ⟹   XP_020919519
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.19131,275,629 - 131,364,490 (+)NCBI
Sequence:
RefSeq Acc Id: XR_002336047
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.19131,275,629 - 131,364,490 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_020919518   ⟸   XM_021063859
- Peptide Label: isoform X1
- UniProtKB: A0A8D0PIG0 (UniProtKB/TrEMBL),   A0A481ALJ2 (UniProtKB/TrEMBL),   A0A8D0IJC3 (UniProtKB/TrEMBL),   A0A8D0T2K4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020919519   ⟸   XM_021063860
- Peptide Label: isoform X2
- UniProtKB: A0A8D1I4T4 (UniProtKB/TrEMBL),   A0A480KKM4 (UniProtKB/TrEMBL),   A0A8D0LHQ3 (UniProtKB/TrEMBL),   A0A8D1YIK8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000054008   ⟸   ENSSSCT00000039522
RefSeq Acc Id: ENSSSCP00000047528   ⟸   ENSSSCT00000039891
RefSeq Acc Id: ENSSSCP00000078330   ⟸   ENSSSCT00000096567


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000015602 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005011771 UniProtKB/TrEMBL
  ENSSSCG00015059272 UniProtKB/TrEMBL
  ENSSSCG00025066739 UniProtKB/TrEMBL
  ENSSSCG00030054355 UniProtKB/TrEMBL
  ENSSSCG00035048594 UniProtKB/TrEMBL
  ENSSSCG00040000563 UniProtKB/TrEMBL
  ENSSSCG00045023416 UniProtKB/TrEMBL
  ENSSSCG00055005568 UniProtKB/TrEMBL
  ENSSSCG00060046855 UniProtKB/TrEMBL
  ENSSSCG00065037178 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000039522 ENTREZGENE
  ENSSSCT00000039522.3 UniProtKB/TrEMBL
  ENSSSCT00000039891.3 UniProtKB/TrEMBL
  ENSSSCT00000096567.1 UniProtKB/TrEMBL
  ENSSSCT00005018173.1 UniProtKB/TrEMBL
  ENSSSCT00005018207.1 UniProtKB/TrEMBL
  ENSSSCT00005018233.1 UniProtKB/TrEMBL
  ENSSSCT00005018360.1 UniProtKB/TrEMBL
  ENSSSCT00005018398.1 UniProtKB/TrEMBL
  ENSSSCT00015079460.1 UniProtKB/TrEMBL
  ENSSSCT00015079993.1 UniProtKB/TrEMBL
  ENSSSCT00015080094.1 UniProtKB/TrEMBL
  ENSSSCT00015080328.1 UniProtKB/TrEMBL
  ENSSSCT00015080502.1 UniProtKB/TrEMBL
  ENSSSCT00015080584.1 UniProtKB/TrEMBL
  ENSSSCT00025091695.1 UniProtKB/TrEMBL
  ENSSSCT00025091989.1 UniProtKB/TrEMBL
  ENSSSCT00025092264.1 UniProtKB/TrEMBL
  ENSSSCT00025092557.1 UniProtKB/TrEMBL
  ENSSSCT00030075788.1 UniProtKB/TrEMBL
  ENSSSCT00030075804.1 UniProtKB/TrEMBL
  ENSSSCT00030075830.1 UniProtKB/TrEMBL
  ENSSSCT00030075865.1 UniProtKB/TrEMBL
  ENSSSCT00035064751.1 UniProtKB/TrEMBL
  ENSSSCT00035064768.1 UniProtKB/TrEMBL
  ENSSSCT00035064771.1 UniProtKB/TrEMBL
  ENSSSCT00035064786.1 UniProtKB/TrEMBL
  ENSSSCT00035064793.1 UniProtKB/TrEMBL
  ENSSSCT00040000669.1 UniProtKB/TrEMBL
  ENSSSCT00040000678.1 UniProtKB/TrEMBL
  ENSSSCT00040000702.1 UniProtKB/TrEMBL
  ENSSSCT00040000713.1 UniProtKB/TrEMBL
  ENSSSCT00045040056.1 UniProtKB/TrEMBL
  ENSSSCT00045040300.1 UniProtKB/TrEMBL
  ENSSSCT00045040497.1 UniProtKB/TrEMBL
  ENSSSCT00045040758.1 UniProtKB/TrEMBL
  ENSSSCT00045041057.1 UniProtKB/TrEMBL
  ENSSSCT00055010897.1 UniProtKB/TrEMBL
  ENSSSCT00055010969.1 UniProtKB/TrEMBL
  ENSSSCT00055011028.1 UniProtKB/TrEMBL
  ENSSSCT00055011109.1 UniProtKB/TrEMBL
  ENSSSCT00055011225.1 UniProtKB/TrEMBL
  ENSSSCT00060063640.1 UniProtKB/TrEMBL
  ENSSSCT00060063661.1 UniProtKB/TrEMBL
  ENSSSCT00060063681.1 UniProtKB/TrEMBL
  ENSSSCT00060063699.1 UniProtKB/TrEMBL
  ENSSSCT00065050721.1 UniProtKB/TrEMBL
  ENSSSCT00065050732.1 UniProtKB/TrEMBL
  ENSSSCT00065050739.1 UniProtKB/TrEMBL
  ENSSSCT00065050746.1 UniProtKB/TrEMBL
  ENSSSCT00065050751.1 UniProtKB/TrEMBL
InterPro ARM-type_fold UniProtKB/TrEMBL
  INTS7 UniProtKB/TrEMBL
NCBI Gene INTS7 ENTREZGENE
PANTHER INTEGRATOR COMPLEX SUBUNIT 7 UniProtKB/TrEMBL
  PTHR13322 UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/TrEMBL
UniProt A0A287AUJ8_PIG UniProtKB/TrEMBL
  A0A287BD12_PIG UniProtKB/TrEMBL
  A0A480KKM4 ENTREZGENE, UniProtKB/TrEMBL
  A0A481ALJ2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0IFP0_PIG UniProtKB/TrEMBL
  A0A8D0IJC3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0IJF3_PIG UniProtKB/TrEMBL
  A0A8D0IMQ2_PIG UniProtKB/TrEMBL
  A0A8D0LHQ3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0PDX8_PIG UniProtKB/TrEMBL
  A0A8D0PE31_PIG UniProtKB/TrEMBL
  A0A8D0PER7_PIG UniProtKB/TrEMBL
  A0A8D0PIG0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0T2K4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0T2M3_PIG UniProtKB/TrEMBL
  A0A8D0T525_PIG UniProtKB/TrEMBL
  A0A8D0U8A7_PIG UniProtKB/TrEMBL
  A0A8D1BV11_PIG UniProtKB/TrEMBL
  A0A8D1CWT9_PIG UniProtKB/TrEMBL
  A0A8D1I4T4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1L147_PIG UniProtKB/TrEMBL
  A0A8D1PMZ7_PIG UniProtKB/TrEMBL
  A0A8D1YIK8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D2C6V9_PIG UniProtKB/TrEMBL
  A0A8W4FGG9_PIG UniProtKB/TrEMBL
VGNC ID VGNC:89167 ENTREZGENE