IKBIP (IKBKB interacting protein) - Rat Genome Database

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Gene: IKBIP (IKBKB interacting protein) Sus scrofa
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Symbol: IKBIP
Name: IKBKB interacting protein
RGD ID: 14113722
Description: ENCODES a protein that exhibits kinase activity (inferred); FOUND IN endoplasmic reticulum (inferred); nucleolus (inferred)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: inhibitor of nuclear factor kappa-B kinase-interacting protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl585,258,459 - 85,278,232 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1585,258,455 - 85,278,235 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2589,581,184 - 89,601,165 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712  


Genomics

Comparative Map Data
IKBIP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl585,258,459 - 85,278,232 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1585,258,455 - 85,278,235 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2589,581,184 - 89,601,165 (+)NCBISscrofa10.2Sscrofa10.2susScr3
IKBIP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381298,613,404 - 98,644,788 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1298,613,405 - 98,645,113 (-)EnsemblGRCh38hg38GRCh38
GRCh371299,007,182 - 99,038,566 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361297,531,313 - 97,562,720 (-)NCBINCBI36Build 36hg18NCBI36
Celera1298,672,181 - 98,703,485 (-)NCBICelera
Cytogenetic Map12q23.1NCBI
HuRef1296,068,349 - 96,099,780 (-)NCBIHuRef
CHM1_11298,972,181 - 99,003,775 (-)NCBICHM1_1
T2T-CHM13v2.01298,586,371 - 98,617,716 (-)NCBIT2T-CHM13v2.0
Ikbip
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391090,918,667 - 90,938,475 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1090,918,802 - 90,938,469 (+)EnsemblGRCm39 Ensembl
GRCm381091,082,737 - 91,102,613 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1091,082,940 - 91,102,607 (+)EnsemblGRCm38mm10GRCm38
MGSCv371090,545,784 - 90,565,358 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361090,512,870 - 90,532,406 (+)NCBIMGSCv36mm8
Celera1083,655,137 - 83,664,148 (-)NCBICelera
Cytogenetic Map10C2NCBI
cM Map1045.54NCBI
Ikbip
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8727,467,097 - 27,485,776 (+)NCBIGRCr8
mRatBN7.2725,579,865 - 25,598,548 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl725,579,832 - 25,605,162 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx727,574,362 - 27,585,633 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0729,736,749 - 29,748,020 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0729,514,157 - 29,525,428 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0731,784,390 - 31,803,200 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl731,784,438 - 31,803,194 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0731,873,199 - 31,891,990 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4728,020,915 - 28,032,829 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1728,041,112 - 28,060,446 (+)NCBI
Celera722,706,680 - 22,717,951 (+)NCBICelera
Cytogenetic Map7q13NCBI
Ikbip
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540534,600,484 - 34,620,029 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540534,600,211 - 34,619,614 (-)NCBIChiLan1.0ChiLan1.0
IKBIP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210106,676,687 - 106,707,957 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112106,673,076 - 106,704,353 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01296,193,050 - 96,224,291 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11299,607,844 - 99,637,527 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1299,607,844 - 99,637,527 (-)Ensemblpanpan1.1panPan2
IKBIP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11538,005,830 - 38,026,715 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1538,006,546 - 38,026,663 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1538,387,551 - 38,408,142 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01538,669,259 - 38,689,847 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1538,669,974 - 38,689,807 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11537,941,134 - 37,961,765 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01538,033,817 - 38,054,405 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01538,307,501 - 38,328,089 (-)NCBIUU_Cfam_GSD_1.0
Ikbip
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494521,892,417 - 21,914,722 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649214,902,825 - 14,920,739 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649214,902,831 - 14,925,838 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IKBIP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11193,912,102 - 93,941,952 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1193,911,816 - 93,941,945 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037151,120,951 - 151,151,214 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ikbip
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247508,941,370 - 8,961,713 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in IKBIP
693 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1
Low 9 4 3 5 2 23 2 3 3
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000050508   ⟹   ENSSSCP00000046327
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl585,258,801 - 85,272,160 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000066079   ⟹   ENSSSCP00000050190
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl585,258,459 - 85,278,232 (+)Ensembl
RefSeq Acc Id: NM_001244129   ⟹   NP_001231058
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1585,258,492 - 85,269,565 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005664219   ⟹   XP_005664276
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1585,258,488 - 85,271,799 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005664220   ⟹   XP_005664277
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1585,258,455 - 85,278,235 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005664221   ⟹   XP_005664278
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1585,258,488 - 85,278,235 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013998047   ⟹   XP_013853501
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1585,258,478 - 85,271,799 (+)NCBI
Sequence:
RefSeq Acc Id: XP_005664277   ⟸   XM_005664220
- Peptide Label: isoform X2
- UniProtKB: A0A4X1SQH7 (UniProtKB/TrEMBL),   A0A287BCM3 (UniProtKB/TrEMBL),   A0A8D0ZDX0 (UniProtKB/TrEMBL),   A0A8D1GQC2 (UniProtKB/TrEMBL),   A0A8D0HQB3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013853501   ⟸   XM_013998047
- Peptide Label: isoform X1
- UniProtKB: A0A287AQU0 (UniProtKB/TrEMBL),   A0A8D1KQH8 (UniProtKB/TrEMBL),   A0A4X1SQJ2 (UniProtKB/TrEMBL),   A0A8D1S598 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005664278   ⟸   XM_005664221
- Peptide Label: isoform X2
- UniProtKB: A0A4X1SQH7 (UniProtKB/TrEMBL),   A0A287BCM3 (UniProtKB/TrEMBL),   A0A8D0ZDX0 (UniProtKB/TrEMBL),   A0A8D1GQC2 (UniProtKB/TrEMBL),   A0A8D0HQB3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005664276   ⟸   XM_005664219
- Peptide Label: isoform X1
- UniProtKB: A0A287AQU0 (UniProtKB/TrEMBL),   A0A8D1KQH8 (UniProtKB/TrEMBL),   A0A4X1SQJ2 (UniProtKB/TrEMBL),   A0A8D1S598 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001231058   ⟸   NM_001244129
- UniProtKB: A0A4X1SQJ2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000046327   ⟸   ENSSSCT00000050508
RefSeq Acc Id: ENSSSCP00000050190   ⟸   ENSSSCT00000066079


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000038772 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005002282 UniProtKB/TrEMBL
  ENSSSCG00015037472 UniProtKB/TrEMBL
  ENSSSCG00025069750 UniProtKB/TrEMBL
  ENSSSCG00030063710 UniProtKB/TrEMBL
  ENSSSCG00035029016 UniProtKB/TrEMBL
  ENSSSCG00040063048 UniProtKB/TrEMBL
  ENSSSCG00045004867 UniProtKB/TrEMBL
  ENSSSCG00050011357 UniProtKB/TrEMBL
  ENSSSCG00055025740 UniProtKB/TrEMBL
  ENSSSCG00060042460 UniProtKB/TrEMBL
  ENSSSCG00065055041 UniProtKB/TrEMBL
  ENSSSCG00070002866 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000050508 ENTREZGENE
  ENSSSCT00000050508.3 UniProtKB/TrEMBL
  ENSSSCT00000066079 ENTREZGENE
  ENSSSCT00000066079.2 UniProtKB/TrEMBL
  ENSSSCT00005003440.1 UniProtKB/TrEMBL
  ENSSSCT00005003455.1 UniProtKB/TrEMBL
  ENSSSCT00005003471.1 UniProtKB/TrEMBL
  ENSSSCT00015049833.1 UniProtKB/TrEMBL
  ENSSSCT00015049937.1 UniProtKB/TrEMBL
  ENSSSCT00015050161.1 UniProtKB/TrEMBL
  ENSSSCT00025095808.1 UniProtKB/TrEMBL
  ENSSSCT00025095886.1 UniProtKB/TrEMBL
  ENSSSCT00030089131.1 UniProtKB/TrEMBL
  ENSSSCT00030089157.1 UniProtKB/TrEMBL
  ENSSSCT00035038392.1 UniProtKB/TrEMBL
  ENSSSCT00035038400.1 UniProtKB/TrEMBL
  ENSSSCT00040085955.1 UniProtKB/TrEMBL
  ENSSSCT00040086075.1 UniProtKB/TrEMBL
  ENSSSCT00045008056.1 UniProtKB/TrEMBL
  ENSSSCT00045008061.1 UniProtKB/TrEMBL
  ENSSSCT00050015274.1 UniProtKB/TrEMBL
  ENSSSCT00055050857.1 UniProtKB/TrEMBL
  ENSSSCT00055050938.1 UniProtKB/TrEMBL
  ENSSSCT00060057567.1 UniProtKB/TrEMBL
  ENSSSCT00060057571.1 UniProtKB/TrEMBL
  ENSSSCT00065075354.1 UniProtKB/TrEMBL
  ENSSSCT00065075361.1 UniProtKB/TrEMBL
  ENSSSCT00065075364.1 UniProtKB/TrEMBL
  ENSSSCT00070005361.1 UniProtKB/TrEMBL
  ENSSSCT00070005371.1 UniProtKB/TrEMBL
  ENSSSCT00070005392.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.58.60 UniProtKB/TrEMBL
InterPro Inh_kappa-B_kinase-int UniProtKB/TrEMBL
NCBI Gene IKBIP ENTREZGENE
PANTHER INHIBITOR OF NUCLEAR FACTOR KAPPA-B KINASE-INTERACTING PROTEIN UniProtKB/TrEMBL
  INHIBITOR OF NUCLEAR FACTOR KAPPA-B KINASE-INTERACTING PROTEIN UniProtKB/TrEMBL
  PTHR21734 UniProtKB/TrEMBL
UniProt A0A287AQU0 ENTREZGENE, UniProtKB/TrEMBL
  A0A287BCM3 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1SQH7 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1SQJ2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0HQB3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0ZDX0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1GQC2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1KQH8 ENTREZGENE
  A0A8D1S598 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A8D1KQH8 UniProtKB/TrEMBL
VGNC ID VGNC:103291 ENTREZGENE