USP18 (ubiquitin specific peptidase 18) - Rat Genome Database

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Gene: USP18 (ubiquitin specific peptidase 18) Sus scrofa
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Symbol: USP18
Name: ubiquitin specific peptidase 18
RGD ID: 14113405
Description: ENCODES a protein that exhibits ISG15-specific peptidase activity (ortholog); INVOLVED IN response to bacterium (ortholog); response to stilbenoid (ortholog); ASSOCIATED WITH Acute Lung Injury (ortholog); Aicardi-Goutieres syndrome (ortholog); Chronic Hepatitis C (ortholog); FOUND IN cytosol (inferred); intracellular membrane-bounded organelle (inferred); nucleus (inferred); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: interferon-stimulated gene 43; ISG43; ubiquitin-specific protease 18; ubl carboxyl-terminal hydrolase 18; UBP
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl570,183,308 - 70,229,572 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1570,183,321 - 70,227,990 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2572,536,548 - 72,595,957 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10489349   PMID:19285125   PMID:19327407   PMID:22301074   PMID:22796444   PMID:30032202  


Genomics

Comparative Map Data
USP18
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl570,183,308 - 70,229,572 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1570,183,321 - 70,227,990 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2572,536,548 - 72,595,957 (+)NCBISscrofa10.2Sscrofa10.2susScr3
USP18
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382218,150,170 - 18,177,397 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2218,149,843 - 18,177,397 (+)EnsemblGRCh38hg38GRCh38
GRCh372218,632,937 - 18,660,164 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362217,012,758 - 17,040,164 (+)NCBINCBI36Build 36hg18NCBI36
Build 342217,007,311 - 17,034,714NCBI
Celera222,251,821 - 2,269,866 (+)NCBICelera
Cytogenetic Map22q11.21NCBI
HuRef222,445,183 - 2,472,579 (+)NCBIHuRef
CHM1_12218,632,478 - 18,659,884 (+)NCBICHM1_1
T2T-CHM13v2.02218,822,080 - 18,849,307 (+)NCBIT2T-CHM13v2.0
Usp18
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396121,222,865 - 121,247,876 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6121,222,865 - 121,247,876 (+)EnsemblGRCm39 Ensembl
GRCm386121,245,906 - 121,270,917 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6121,245,906 - 121,270,917 (+)EnsemblGRCm38mm10GRCm38
MGSCv376121,195,924 - 121,220,935 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366121,211,575 - 121,236,536 (+)NCBIMGSCv36mm8
Celera6123,079,923 - 123,105,170 (+)NCBICelera
Cytogenetic Map6F1NCBI
cM Map657.17NCBI
Usp18
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84156,143,770 - 156,171,292 (+)NCBIGRCr8
mRatBN7.24154,471,634 - 154,499,154 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4154,471,592 - 154,499,144 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4160,737,808 - 160,765,283 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04156,521,289 - 156,548,767 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04155,144,802 - 155,172,259 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04153,812,312 - 153,834,374 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4153,805,993 - 153,834,430 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04220,901,558 - 220,922,139 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44157,692,720 - 157,694,884 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4143,317,875 - 143,338,351 (+)NCBICelera
Cytogenetic Map4q42NCBI
Usp18
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554546,171,569 - 6,203,091 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554546,171,575 - 6,200,879 (+)NCBIChiLan1.0ChiLan1.0
USP18
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22328,464,266 - 28,491,820 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12231,012,239 - 31,041,912 (+)NCBINHGRI_mPanPan1
USP18
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12745,739,845 - 45,814,668 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha27868,159 - 943,927 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02746,107,395 - 46,183,398 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2746,106,886 - 46,183,378 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12746,041,070 - 46,116,807 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02746,008,145 - 46,083,815 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.027223,830 - 299,560 (-)NCBIUU_Cfam_GSD_1.0
Usp18
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945109,829,924 - 109,854,928 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049368071,090,882 - 1,114,770 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049368071,090,928 - 1,116,166 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
Usp18
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247359,158,597 - 9,187,503 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in USP18
1046 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 8 2 2 3
Low 2 4 3 3 2 23 1 1
Below cutoff 1

Sequence


RefSeq Acc Id: ENSSSCT00000064310   ⟹   ENSSSCP00000050770
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl570,183,308 - 70,227,985 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000065704   ⟹   ENSSSCP00000040529
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl570,183,308 - 70,229,572 (+)Ensembl
RefSeq Acc Id: NM_213826   ⟹   NP_998991
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1570,183,321 - 70,227,990 (+)NCBI
Sequence:
RefSeq Acc Id: NP_998991   ⟸   NM_213826
- UniProtKB: Q9TU68 (UniProtKB/TrEMBL),   A0A4X1UAD4 (UniProtKB/TrEMBL),   A0A287A210 (UniProtKB/TrEMBL),   A0A287A953 (UniProtKB/TrEMBL),   A0A8D0LLJ1 (UniProtKB/TrEMBL),   A0A8D1I8R0 (UniProtKB/TrEMBL),   B2MUD2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000050770   ⟸   ENSSSCT00000064310
RefSeq Acc Id: ENSSSCP00000040529   ⟸   ENSSSCT00000065704
Protein Domains
USP


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000000774 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005019786 UniProtKB/TrEMBL
  ENSSSCG00015016290 UniProtKB/TrEMBL
  ENSSSCG00025042760 UniProtKB/TrEMBL
  ENSSSCG00030051104 UniProtKB/TrEMBL
  ENSSSCG00035074588 UniProtKB/TrEMBL
  ENSSSCG00040072976 UniProtKB/TrEMBL
  ENSSSCG00045026360 UniProtKB/TrEMBL
  ENSSSCG00050052717 UniProtKB/TrEMBL
  ENSSSCG00060030347 UniProtKB/TrEMBL
  ENSSSCG00065032619 UniProtKB/TrEMBL
  ENSSSCG00070015156 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000065704 ENTREZGENE
  ENSSSCT00000065704.3 UniProtKB/TrEMBL
  ENSSSCT00005031384.1 UniProtKB/TrEMBL
  ENSSSCT00015022001.1 UniProtKB/TrEMBL
  ENSSSCT00015022026.1 UniProtKB/TrEMBL
  ENSSSCT00025058249.1 UniProtKB/TrEMBL
  ENSSSCT00025058409.1 UniProtKB/TrEMBL
  ENSSSCT00025058565.1 UniProtKB/TrEMBL
  ENSSSCT00025058726.1 UniProtKB/TrEMBL
  ENSSSCT00030071299.1 UniProtKB/TrEMBL
  ENSSSCT00035101388.1 UniProtKB/TrEMBL
  ENSSSCT00035101447.1 UniProtKB/TrEMBL
  ENSSSCT00035101484.1 UniProtKB/TrEMBL
  ENSSSCT00040100619.1 UniProtKB/TrEMBL
  ENSSSCT00040100680.1 UniProtKB/TrEMBL
  ENSSSCT00045044935.1 UniProtKB/TrEMBL
  ENSSSCT00045045064.1 UniProtKB/TrEMBL
  ENSSSCT00045045155.1 UniProtKB/TrEMBL
  ENSSSCT00045045253.1 UniProtKB/TrEMBL
  ENSSSCT00045045367.1 UniProtKB/TrEMBL
  ENSSSCT00050071808.1 UniProtKB/TrEMBL
  ENSSSCT00060041014.1 UniProtKB/TrEMBL
  ENSSSCT00060041020.1 UniProtKB/TrEMBL
  ENSSSCT00060041023.1 UniProtKB/TrEMBL
  ENSSSCT00060041027.1 UniProtKB/TrEMBL
  ENSSSCT00065044229.1 UniProtKB/TrEMBL
  ENSSSCT00065044237.1 UniProtKB/TrEMBL
  ENSSSCT00065044250.1 UniProtKB/TrEMBL
  ENSSSCT00065044253.1 UniProtKB/TrEMBL
  ENSSSCT00065044262.1 UniProtKB/TrEMBL
  ENSSSCT00070029820.1 UniProtKB/TrEMBL
  ENSSSCT00070029856.1 UniProtKB/TrEMBL
  ENSSSCT00070029878.1 UniProtKB/TrEMBL
Gene3D-CATH Cysteine proteinases UniProtKB/TrEMBL
InterPro Papain_like_cys_pep_sf UniProtKB/TrEMBL
  Peptidase_C19_UCH UniProtKB/TrEMBL
  USP_CS UniProtKB/TrEMBL
  USP_dom UniProtKB/TrEMBL
KEGG Report ssc:396777 UniProtKB/TrEMBL
NCBI Gene USP18 ENTREZGENE
PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE UniProtKB/TrEMBL
  UBL CARBOXYL-TERMINAL HYDROLASE 18-RELATED UniProtKB/TrEMBL
Pfam UCH UniProtKB/TrEMBL
PROSITE USP_1 UniProtKB/TrEMBL
  USP_2 UniProtKB/TrEMBL
  USP_3 UniProtKB/TrEMBL
Superfamily-SCOP SSF54001 UniProtKB/TrEMBL
UniProt A0A287A210 ENTREZGENE, UniProtKB/TrEMBL
  A0A287A953 ENTREZGENE
  A0A4X1U5C3_PIG UniProtKB/TrEMBL
  A0A4X1UAD4 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1UAI9_PIG UniProtKB/TrEMBL
  A0A8D0LLJ1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0MVS0_PIG UniProtKB/TrEMBL
  A0A8D0SCA7_PIG UniProtKB/TrEMBL
  A0A8D1BDL7_PIG UniProtKB/TrEMBL
  A0A8D1I8R0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1IAX6_PIG UniProtKB/TrEMBL
  A0A8D1IC20_PIG UniProtKB/TrEMBL
  A0A8D1IKP0_PIG UniProtKB/TrEMBL
  A0A8D1V0J8_PIG UniProtKB/TrEMBL
  A0A8D1V122_PIG UniProtKB/TrEMBL
  A0A8D1YAV1_PIG UniProtKB/TrEMBL
  A0A8D1YAX4_PIG UniProtKB/TrEMBL
  A0A8D1YDE4_PIG UniProtKB/TrEMBL
  B2MUD2 ENTREZGENE, UniProtKB/TrEMBL
  Q9TU68 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A287A953 UniProtKB/TrEMBL