LOC100517850 (multidrug resistance-associated protein 4-like) - Rat Genome Database

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Pathways
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Gene: LOC100517850 (multidrug resistance-associated protein 4-like) Sus scrofa
Analyze
No known orthologs.
Symbol: LOC100517850
Name: multidrug resistance-associated protein 4-like
RGD ID: 14108377
Description: ENCODES a protein that exhibits ABC-type transporter activity (inferred); ATP binding (inferred); ATP hydrolysis activity (inferred); INVOLVED IN transmembrane transport (inferred); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa10.21170,596,014 - 70,751,594 (+)NCBISscrofa10.2Sscrofa10.2susScr3


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system hemolymphoid system nervous system renal system reproductive system
High
Medium 1
Low 6 1 2
Below cutoff 2 5 2 1

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021081819 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Protein Sequences
Protein RefSeqs XP_020937478 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000010145.5
  ENSSSCP00000041770
  ENSSSCP00000041770.2
  ENSSSCP00000079973.1
Protein Domains
ABC transmembrane type-1   ABC transporter


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000009499 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000010416.5 UniProtKB/TrEMBL
  ENSSSCT00000054748 ENTREZGENE
  ENSSSCT00000054748.3 UniProtKB/TrEMBL
  ENSSSCT00000096504.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1560.10 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
InterPro AAA+_ATPase UniProtKB/TrEMBL
  ABC1_TM_dom UniProtKB/TrEMBL
  ABC1_TM_sf UniProtKB/TrEMBL
  ABC_transporter-like UniProtKB/TrEMBL
  ABC_transporter_CS UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
NCBI Gene LOC100517850 ENTREZGENE
PANTHER ATP-BINDING CASSETTE SUB-FAMILY C UniProtKB/TrEMBL
  ATP-BINDING CASSETTE SUB-FAMILY C MEMBER 4 UniProtKB/TrEMBL
Pfam ABC_membrane UniProtKB/TrEMBL
  ABC_tran UniProtKB/TrEMBL
PROSITE ABC_TM1F UniProtKB/TrEMBL
  ABC_TRANSPORTER_1 UniProtKB/TrEMBL
  ABC_TRANSPORTER_2 UniProtKB/TrEMBL
SMART AAA UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
  SSF90123 UniProtKB/TrEMBL
UniProt A0A287AD60 ENTREZGENE, UniProtKB/TrEMBL
  A0A8W4FM45_PIG UniProtKB/TrEMBL
  F1RP53_PIG UniProtKB/TrEMBL