FBXO9 (F-box protein 9) - Rat Genome Database

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Gene: FBXO9 (F-box protein 9) Sus scrofa
Analyze
Symbol: FBXO9
Name: F-box protein 9
RGD ID: 14108277
Description: ENCODES a protein that exhibits ubiquitin-like ligase-substrate adaptor activity (inferred); INVOLVED IN fat cell differentiation (ortholog); innate immune response (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN cytoplasm (inferred); SCF ubiquitin ligase complex (inferred)
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: F-box only protein 9
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl746,723,680 - 46,748,121 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1746,723,579 - 46,748,132 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27134,465,992 - 134,490,747 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
FBXO9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl746,723,680 - 46,748,121 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1746,723,579 - 46,748,132 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27134,465,992 - 134,490,747 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FBXO9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38653,064,998 - 53,100,873 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl653,051,991 - 53,100,873 (+)EnsemblGRCh38hg38GRCh38
GRCh37652,929,796 - 52,965,671 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36653,037,755 - 53,073,630 (+)NCBINCBI36Build 36hg18NCBI36
Build 34653,037,754 - 53,072,342NCBI
Celera654,591,593 - 54,627,465 (+)NCBICelera
Cytogenetic Map6p12.1NCBI
HuRef652,761,360 - 52,797,210 (+)NCBIHuRef
CHM1_1652,931,587 - 52,967,433 (+)NCBICHM1_1
T2T-CHM13v2.0652,904,603 - 52,940,463 (+)NCBIT2T-CHM13v2.0
Fbxo9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39977,988,781 - 78,016,347 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl977,988,781 - 78,016,347 (-)EnsemblGRCm39 Ensembl
GRCm38978,081,499 - 78,109,065 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl978,081,499 - 78,109,065 (-)EnsemblGRCm38mm10GRCm38
MGSCv37977,929,306 - 77,956,860 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36977,867,182 - 77,894,309 (-)NCBIMGSCv36mm8
Celera975,258,725 - 75,286,256 (-)NCBICelera
Cytogenetic Map9E1NCBI
cM Map943.53NCBI
Fbxo9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8887,838,787 - 87,864,362 (-)NCBIGRCr8
mRatBN7.2878,958,482 - 78,984,015 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl878,958,483 - 78,983,949 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx884,445,446 - 84,470,413 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0882,722,097 - 82,747,064 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0880,544,818 - 80,569,787 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0885,388,331 - 85,413,896 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl885,388,333 - 85,413,484 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0884,953,188 - 84,978,726 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4883,056,071 - 83,081,992 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1883,075,126 - 83,101,046 (-)NCBI
Celera878,703,574 - 78,728,540 (-)NCBICelera
Cytogenetic Map8q31NCBI
Fbxo9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554112,961,160 - 2,995,097 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554112,960,517 - 2,993,787 (-)NCBIChiLan1.0ChiLan1.0
FBXO9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2567,536,890 - 67,569,182 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1663,413,560 - 63,448,339 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0652,621,036 - 52,652,980 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1654,259,044 - 54,291,216 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl654,259,044 - 54,291,207 (+)Ensemblpanpan1.1panPan2
FBXO9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11220,514,590 - 20,562,507 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1220,514,590 - 20,562,498 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1220,408,930 - 20,456,855 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01221,011,554 - 21,060,480 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1221,011,525 - 21,060,478 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11220,516,927 - 20,565,226 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01220,621,623 - 20,670,073 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01220,758,978 - 20,807,342 (+)NCBIUU_Cfam_GSD_1.0
Fbxo9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494656,150,528 - 56,190,847 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364767,769,295 - 7,810,235 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364767,769,355 - 7,809,688 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FBXO9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11719,472,653 - 19,509,783 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1719,469,964 - 19,506,033 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604452,911,492 - 52,948,878 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fbxo9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624850287,586 - 336,827 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624850287,585 - 335,939 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in FBXO9
895 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 9 2 3 5 2 23 2 3 3
Low 1 2
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000002917   ⟹   ENSSSCP00000002838
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl746,723,593 - 46,761,484 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000066577   ⟹   ENSSSCP00000070521
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl746,723,680 - 46,748,121 (+)Ensembl
RefSeq Acc Id: NM_001160297   ⟹   NP_001153769
RefSeq Status: VALIDATED
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1746,723,579 - 46,748,132 (+)NCBI
Sequence:
RefSeq Acc Id: NP_001153769   ⟸   NM_001160297
- UniProtKB: F1S7C6 (UniProtKB/TrEMBL),   A0A4X1TFG6 (UniProtKB/TrEMBL),   A0A5G2R2F0 (UniProtKB/TrEMBL),   A0A8D1YC79 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000002838   ⟸   ENSSSCT00000002917
RefSeq Acc Id: ENSSSCP00000070521   ⟸   ENSSSCT00000066577
Protein Domains
F-box


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000002629 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015069409 UniProtKB/TrEMBL
  ENSSSCG00025050921 UniProtKB/TrEMBL
  ENSSSCG00030050785 UniProtKB/TrEMBL
  ENSSSCG00035067043 UniProtKB/TrEMBL
  ENSSSCG00040055287 UniProtKB/TrEMBL
  ENSSSCG00045031979 UniProtKB/TrEMBL
  ENSSSCG00050022227 UniProtKB/TrEMBL
  ENSSSCG00055012221 UniProtKB/TrEMBL
  ENSSSCG00060015816 UniProtKB/TrEMBL
  ENSSSCG00065031949 UniProtKB/TrEMBL
  ENSSSCG00070008733 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000066577 ENTREZGENE
  ENSSSCT00000066577.2 UniProtKB/TrEMBL
  ENSSSCT00015093073.1 UniProtKB/TrEMBL
  ENSSSCT00015093210.1 UniProtKB/TrEMBL
  ENSSSCT00025069512.1 UniProtKB/TrEMBL
  ENSSSCT00030070783.1 UniProtKB/TrEMBL
  ENSSSCT00035090397.1 UniProtKB/TrEMBL
  ENSSSCT00040074897.1 UniProtKB/TrEMBL
  ENSSSCT00045054573.1 UniProtKB/TrEMBL
  ENSSSCT00050029987.1 UniProtKB/TrEMBL
  ENSSSCT00055023943.1 UniProtKB/TrEMBL
  ENSSSCT00060021034.1 UniProtKB/TrEMBL
  ENSSSCT00065043261.1 UniProtKB/TrEMBL
  ENSSSCT00065043270.1 UniProtKB/TrEMBL
  ENSSSCT00070016979.1 UniProtKB/TrEMBL
  ENSSSCT00070016988.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1280.50 UniProtKB/TrEMBL
InterPro F-box-like_dom_sf UniProtKB/TrEMBL
  F-box_dom UniProtKB/TrEMBL
  FBXO9/FBXO48 UniProtKB/TrEMBL
  Hrt3/FBXO9_C UniProtKB/TrEMBL
  MIT_dom_sf UniProtKB/TrEMBL
KEGG Report ssc:100152568 UniProtKB/TrEMBL
NCBI Gene FBXO9 ENTREZGENE
PANTHER F-BOX ONLY PROTEIN 9 UniProtKB/TrEMBL
  PTHR12874 UniProtKB/TrEMBL
Pfam F-box-like UniProtKB/TrEMBL
  FBO_C UniProtKB/TrEMBL
PROSITE FBOX UniProtKB/TrEMBL
Superfamily-SCOP SSF116846 UniProtKB/TrEMBL
  SSF81383 UniProtKB/TrEMBL
UniProt A0A4X1TFG6 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1TG12_PIG UniProtKB/TrEMBL
  A0A5G2R2F0 ENTREZGENE
  A0A8D0UAQ3_PIG UniProtKB/TrEMBL
  A0A8D1YC79 ENTREZGENE, UniProtKB/TrEMBL
  F1S7C6 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A5G2R2F0 UniProtKB/TrEMBL
VGNC ID VGNC:88054 ENTREZGENE