PMAP-36 (antibacterial peptide) - Rat Genome Database

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Gene: PMAP-36 (antibacterial peptide) Sus scrofa
Analyze
No known orthologs.
Symbol: PMAP-36
Name: antibacterial peptide
RGD ID: 14106507
Description: INVOLVED IN defense response (inferred); defense response to bacterium (inferred); FOUND IN extracellular region (inferred)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: antibacterial peptide PMAP-36; myeloid antibacterial peptide 36; PMAP36
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1330,991,284 - 30,993,018 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11330,991,289 - 30,993,023 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:8293820   PMID:14681463   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Variants

.
Variants in PMAP-36
12 total Variants

Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000076920   ⟹   ENSSSCP00000063210
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1330,991,284 - 30,993,018 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000087617   ⟹   ENSSSCP00000065852
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1330,991,273 - 30,992,245 (+)Ensembl
RefSeq Acc Id: NM_001129965   ⟹   NP_001123437
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11330,991,289 - 30,993,023 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001123437 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA31070 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000063210
  ENSSSCP00000063210.1
GenBank Protein P49931 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_001123437   ⟸   NM_001129965
- Peptide Label: precursor
- UniProtKB: P49931 (UniProtKB/Swiss-Prot),   A0A5G2QHA2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000063210   ⟸   ENSSSCT00000076920
RefSeq Acc Id: ENSSSCP00000065852   ⟸   ENSSSCT00000087617


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000045208 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000076920 ENTREZGENE
  ENSSSCT00000076920.2 UniProtKB/TrEMBL
Gene3D-CATH 3.10.450.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Cathelicidin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cathelicidin_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cystatin_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report ssc:100170124 UniProtKB/Swiss-Prot
NCBI Gene PMAP-36 ENTREZGENE
PANTHER CATHELICIDIN ANTIMICROBIAL PEPTIDE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR10206 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Cathelicidins UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE CATHELICIDINS_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CATHELICIDINS_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF54403 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A5G2QHA2 ENTREZGENE, UniProtKB/TrEMBL
  P49931 ENTREZGENE, UniProtKB/Swiss-Prot