SLC16A13 (solute carrier family 16 member 13) - Rat Genome Database

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Gene: SLC16A13 (solute carrier family 16 member 13) Sus scrofa
Analyze
Symbol: SLC16A13
Name: solute carrier family 16 member 13
RGD ID: 14101266
Description: ENCODES a protein that exhibits monocarboxylic acid transmembrane transporter activity (inferred); transmembrane transporter activity (inferred); INVOLVED IN monocarboxylic acid transport (inferred); transmembrane transport (inferred); ASSOCIATED WITH common variable immunodeficiency (ortholog); congenital myasthenic syndrome 2A (ortholog); developmental and epileptic encephalopathy 25 (ortholog); FOUND IN cytosol (inferred); Golgi apparatus (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: monocarboxylate transporter 13
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1252,435,537 - 52,439,994 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11252,435,519 - 52,439,631 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21254,699,426 - 54,703,232 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SLC16A13
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1252,435,537 - 52,439,994 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11252,435,519 - 52,439,631 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21254,699,426 - 54,703,232 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC16A13
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38177,036,015 - 7,040,117 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl177,036,015 - 7,040,117 (+)EnsemblGRCh38hg38GRCh38
GRCh37176,939,334 - 6,943,436 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36176,880,426 - 6,884,005 (+)NCBINCBI36Build 36hg18NCBI36
Build 34176,880,425 - 6,884,005NCBI
Celera176,964,936 - 6,968,991 (+)NCBICelera
Cytogenetic Map17p13.1NCBI
HuRef176,833,069 - 6,836,740 (+)NCBIHuRef
CHM1_1176,948,820 - 6,952,496 (+)NCBICHM1_1
T2T-CHM13v2.0176,936,666 - 6,940,776 (+)NCBIT2T-CHM13v2.0
Slc16a13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391170,107,615 - 70,113,638 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1170,107,615 - 70,111,890 (-)EnsemblGRCm39 Ensembl
GRCm381170,216,789 - 70,222,740 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1170,216,789 - 70,221,064 (-)EnsemblGRCm38mm10GRCm38
MGSCv371170,030,294 - 70,034,496 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361170,032,987 - 70,037,189 (-)NCBIMGSCv36mm8
Celera1177,761,249 - 77,765,453 (-)NCBICelera
Cytogenetic Map11B3NCBI
cM Map1142.99NCBI
Slc16a13
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81055,424,633 - 55,436,555 (-)NCBIGRCr8
mRatBN7.21054,925,973 - 54,937,860 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1054,926,760 - 54,937,788 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1059,613,643 - 59,617,296 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01059,102,242 - 59,105,895 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01054,601,366 - 54,605,019 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01056,827,591 - 56,831,324 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1056,827,594 - 56,831,243 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01056,571,905 - 56,575,629 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41057,056,391 - 57,060,041 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11057,070,014 - 57,073,664 (-)NCBI
Celera1054,085,605 - 54,089,255 (-)NCBICelera
Cytogenetic Map10q24NCBI
Slc16a13
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554679,894,833 - 9,900,295 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554679,894,833 - 9,900,295 (-)NCBIChiLan1.0ChiLan1.0
SLC16A13
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21914,628,573 - 14,635,112 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11716,595,554 - 16,601,096 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0177,066,765 - 7,071,082 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1177,055,038 - 7,059,170 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl177,055,038 - 7,059,170 (+)Ensemblpanpan1.1panPan2
SLC16A13
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1532,059,041 - 32,062,971 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl532,059,463 - 32,062,564 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha532,197,745 - 32,201,675 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0532,164,053 - 32,167,983 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl532,164,477 - 32,167,578 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1532,130,094 - 32,134,024 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0532,089,317 - 32,093,247 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0532,265,800 - 32,269,730 (+)NCBIUU_Cfam_GSD_1.0
Slc16a13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560246,827,129 - 46,832,456 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936595298,637 - 309,631 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936595300,713 - 306,644 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC16A13
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1166,394,311 - 6,399,151 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl166,395,927 - 6,398,992 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605915,016,025 - 15,019,785 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc16a13
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247869,574,583 - 9,579,048 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247869,575,407 - 9,579,052 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SLC16A13
49 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 7 2 3 5 12 2 3 3
Below cutoff 3 2 2 11

Sequence


RefSeq Acc Id: ENSSSCT00000019509   ⟹   ENSSSCP00000018991
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1252,435,537 - 52,439,994 (+)Ensembl
RefSeq Acc Id: XM_003131926   ⟹   XP_003131974
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11252,435,519 - 52,439,631 (+)NCBI
Sequence:
RefSeq Acc Id: XP_003131974   ⟸   XM_003131926
- UniProtKB: F1RFS1 (UniProtKB/TrEMBL),   A0A4X1UZI2 (UniProtKB/TrEMBL),   A0A8D0MFI4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000018991   ⟸   ENSSSCT00000019509

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000017926 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005030012 UniProtKB/TrEMBL
  ENSSSCG00015005036 UniProtKB/TrEMBL
  ENSSSCG00025050729 UniProtKB/TrEMBL
  ENSSSCG00030068486 UniProtKB/TrEMBL
  ENSSSCG00035064689 UniProtKB/TrEMBL
  ENSSSCG00040035471 UniProtKB/TrEMBL
  ENSSSCG00045023023 UniProtKB/TrEMBL
  ENSSSCG00050003594 UniProtKB/TrEMBL
  ENSSSCG00055009509 UniProtKB/TrEMBL
  ENSSSCG00060027431 UniProtKB/TrEMBL
  ENSSSCG00065067151 UniProtKB/TrEMBL
  ENSSSCG00070020481 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000019509 ENTREZGENE
  ENSSSCT00000019509.4 UniProtKB/TrEMBL
  ENSSSCT00005047733.1 UniProtKB/TrEMBL
  ENSSSCT00015006760.1 UniProtKB/TrEMBL
  ENSSSCT00025069259.1 UniProtKB/TrEMBL
  ENSSSCT00030095764.1 UniProtKB/TrEMBL
  ENSSSCT00035087093.1 UniProtKB/TrEMBL
  ENSSSCT00040047647.1 UniProtKB/TrEMBL
  ENSSSCT00045039316.1 UniProtKB/TrEMBL
  ENSSSCT00050004816.1 UniProtKB/TrEMBL
  ENSSSCT00055018529.1 UniProtKB/TrEMBL
  ENSSSCT00060037125.1 UniProtKB/TrEMBL
  ENSSSCT00065092153.1 UniProtKB/TrEMBL
  ENSSSCT00070040713.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1250.20 UniProtKB/TrEMBL
InterPro MFS UniProtKB/TrEMBL
  MFS_dom UniProtKB/TrEMBL
  MFS_MCT_13 UniProtKB/TrEMBL
  MFS_trans_sf UniProtKB/TrEMBL
KEGG Report ssc:100517000 UniProtKB/TrEMBL
NCBI Gene SLC16A13 ENTREZGENE
PANTHER MONOCARBOXYLATE TRANSPORTER UniProtKB/TrEMBL
  MONOCARBOXYLATE TRANSPORTER 13 UniProtKB/TrEMBL
Pfam MFS_1 UniProtKB/TrEMBL
PROSITE MFS UniProtKB/TrEMBL
Superfamily-SCOP SSF103473 UniProtKB/TrEMBL
UniProt A0A4X1UZI2 ENTREZGENE
  A0A8D0MFI4 ENTREZGENE, UniProtKB/TrEMBL
  F1RFS1 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A4X1UZI2 UniProtKB/TrEMBL
VGNC ID VGNC:92941 ENTREZGENE