LOC100520832 (lithostathine-like) - Rat Genome Database

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Pathways
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Gene: LOC100520832 (lithostathine-like) Sus scrofa
Analyze
No known orthologs.
Symbol: LOC100520832
Name: lithostathine-like
RGD ID: 14100834
Description: ENCODES a protein that exhibits carbohydrate binding (inferred); oligosaccharide binding (inferred); peptidoglycan binding (inferred); INVOLVED IN antimicrobial humoral immune response mediated by antimicrobial peptide (inferred); disruption of cell wall in another organism (inferred); positive regulation of cell population proliferation (inferred); FOUND IN collagen-containing extracellular matrix (inferred); extracellular space (inferred)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: Reg 3; regenerating islet-derived 3; regenerating islet-derived family member 3
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1364,792,665 - 64,795,666 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2367,957,059 - 67,973,249 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Variants

.
Variants in LOC100520832
160 total Variants

Expression


Sequence


Reference Sequences
RefSeq Acc Id: NM_001285972   ⟹   NP_001272901
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1364,792,695 - 64,795,490 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013995996   ⟹   XP_013851450
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1364,792,665 - 64,795,666 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_013851450   ⟸   XM_013995996
- Peptide Label: isoform X1
- UniProtKB: K7GSX9 (UniProtKB/TrEMBL),   A0A8D1TXW4 (UniProtKB/TrEMBL),   A0A4X1W6X2 (UniProtKB/TrEMBL),   A0A8D0I8N9 (UniProtKB/TrEMBL),   A0A8D1VYE1 (UniProtKB/TrEMBL),   B8YGC0 (UniProtKB/TrEMBL),   X5I0V6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001272901   ⟸   NM_001285972
- Peptide Label: precursor
- UniProtKB: M4M654 (UniProtKB/TrEMBL),   A0A4X1W6X2 (UniProtKB/TrEMBL),   B8YGC0 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
C-type lectin


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000037620 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005007032 UniProtKB/TrEMBL
  ENSSSCG00015073046 UniProtKB/TrEMBL
  ENSSSCG00040022706 UniProtKB/TrEMBL
  ENSSSCG00045003002 UniProtKB/TrEMBL
  ENSSSCG00050024401 UniProtKB/TrEMBL
  ENSSSCG00055007896 UniProtKB/TrEMBL
  ENSSSCG00060052974 UniProtKB/TrEMBL
  ENSSSCG00070029164 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000034952 ENTREZGENE
  ENSSSCT00000034952.4 UniProtKB/TrEMBL
  ENSSSCT00005011072.1 UniProtKB/TrEMBL
  ENSSSCT00015098348.1 UniProtKB/TrEMBL
  ENSSSCT00015098875.1 UniProtKB/TrEMBL
  ENSSSCT00015099224.1 UniProtKB/TrEMBL
  ENSSSCT00040030531.1 UniProtKB/TrEMBL
  ENSSSCT00045004831.1 UniProtKB/TrEMBL
  ENSSSCT00045004834.1 UniProtKB/TrEMBL
  ENSSSCT00050032899.1 UniProtKB/TrEMBL
  ENSSSCT00055015439.1 UniProtKB/TrEMBL
  ENSSSCT00055015494.1 UniProtKB/TrEMBL
  ENSSSCT00060072190.1 UniProtKB/TrEMBL
  ENSSSCT00070058538.1 UniProtKB/TrEMBL
  ENSSSCT00070058540.1 UniProtKB/TrEMBL
  ENSSSCT00070058542.1 UniProtKB/TrEMBL
  ENSSSCT00070058546.1 UniProtKB/TrEMBL
  ENSSSCT00070058547.1 UniProtKB/TrEMBL
  ENSSSCT00070058549.1 UniProtKB/TrEMBL
  ENSSSCT00070058551.1 UniProtKB/TrEMBL
  ENSSSCT00070058553.1 UniProtKB/TrEMBL
Gene3D-CATH 3.10.100.10 UniProtKB/TrEMBL
InterPro C-type_lectin-like UniProtKB/TrEMBL
  C-type_lectin-like/link_sf UniProtKB/TrEMBL
  C-type_lectin_CS UniProtKB/TrEMBL
  CTDL_fold UniProtKB/TrEMBL
KEGG Report ssc:100520832 UniProtKB/TrEMBL
NCBI Gene LOC100520832 ENTREZGENE
PANTHER MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED UniProtKB/TrEMBL
  REGENERATING ISLET-DERIVED PROTEIN 3-GAMMA UniProtKB/TrEMBL
Pfam Lectin_C UniProtKB/TrEMBL
PRINTS PNCREATITSAP UniProtKB/TrEMBL
PROSITE C_TYPE_LECTIN_1 UniProtKB/TrEMBL
  C_TYPE_LECTIN_2 UniProtKB/TrEMBL
SMART CLECT UniProtKB/TrEMBL
Superfamily-SCOP SSF56436 UniProtKB/TrEMBL
UniProt A0A4X1W5R8_PIG UniProtKB/TrEMBL
  A0A4X1W6L1_PIG UniProtKB/TrEMBL
  A0A4X1W6X2 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1W6Y7_PIG UniProtKB/TrEMBL
  A0A4X1W7Z1_PIG UniProtKB/TrEMBL
  A0A8D0I8N9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1TXW4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1VYE1 ENTREZGENE, UniProtKB/TrEMBL
  B8YGC0 ENTREZGENE, UniProtKB/TrEMBL
  K7GSX9 ENTREZGENE, UniProtKB/TrEMBL
  M4M654 ENTREZGENE, UniProtKB/TrEMBL
  X5I0V6 ENTREZGENE, UniProtKB/TrEMBL