ZFP42 (ZFP42 zinc finger protein) - Rat Genome Database

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Gene: ZFP42 (ZFP42 zinc finger protein) Sus scrofa
Analyze
Symbol: ZFP42
Name: ZFP42 zinc finger protein
RGD ID: 14087079
Description: ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); sequence-specific DNA binding (ortholog); sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN cellular response to leukemia inhibitory factor (ortholog); female gonad development (ortholog); genomic imprinting (ortholog); ASSOCIATED WITH autistic disorder (ortholog); factor XI deficiency (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN cytoplasm (ortholog); protein-containing complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: zinc finger protein 42 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl177,402,071 - 7,403,247 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1177,401,729 - 7,409,027 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2178,282,671 - 8,290,195 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
ZFP42
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl177,402,071 - 7,403,247 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1177,401,729 - 7,409,027 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2178,282,671 - 8,290,195 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZFP42
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384187,995,771 - 188,005,246 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4187,995,771 - 188,005,046 (+)EnsemblGRCh38hg38GRCh38
GRCh374188,916,925 - 188,926,200 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 364189,153,919 - 189,163,193 (+)NCBINCBI36Build 36hg18NCBI36
Celera4186,226,500 - 186,235,743 (+)NCBICelera
Cytogenetic Map4q35.2NCBI
HuRef4184,653,751 - 184,663,028 (+)NCBIHuRef
CHM1_14188,893,484 - 188,902,761 (+)NCBICHM1_1
T2T-CHM13v2.04191,341,992 - 191,352,990 (+)NCBIT2T-CHM13v2.0
Zfp42
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39843,748,100 - 43,760,041 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl843,748,100 - 43,760,017 (-)EnsemblGRCm39 Ensembl
GRCm38843,295,067 - 43,307,009 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl843,295,063 - 43,306,980 (-)EnsemblGRCm38mm10GRCm38
MGSCv37844,380,421 - 44,392,363 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36844,793,888 - 44,805,777 (-)NCBIMGSCv36mm8
Celera845,980,115 - 45,992,188 (-)NCBICelera
Cytogenetic Map8A4NCBI
cM Map823.89NCBI
Zfp42
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81655,568,903 - 55,577,883 (+)NCBIGRCr8
mRatBN7.21648,836,463 - 48,845,443 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1648,836,648 - 48,845,401 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1654,232,714 - 54,241,617 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01657,606,749 - 57,615,729 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01652,870,722 - 52,879,624 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01652,016,590 - 52,026,346 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01651,743,302 - 51,753,068 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41652,150,048 - 52,158,306 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11652,150,122 - 52,158,381 (+)NCBI
Celera1646,809,653 - 46,819,299 (+)NCBICelera
Cytogenetic Map16q12.1NCBI
Zfp42
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540321,222,138 - 21,227,341 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540321,222,129 - 21,227,341 (-)NCBIChiLan1.0ChiLan1.0
ZFP42
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23185,718,834 - 185,735,904 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14186,073,425 - 186,090,495 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04180,152,673 - 180,162,899 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14192,342,123 - 192,350,455 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4192,349,144 - 192,350,076 (+)Ensemblpanpan1.1panPan2
ZFP42
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11643,091,607 - 43,092,521 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1643,091,607 - 43,092,371 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1643,582,074 - 43,582,988 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01645,313,708 - 45,314,622 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1645,313,708 - 45,314,472 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11643,273,694 - 43,274,608 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01643,880,184 - 43,881,098 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01643,983,748 - 43,984,662 (-)NCBIUU_Cfam_GSD_1.0
Zfp42
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494336,322,857 - 36,323,627 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365541,786,355 - 1,787,125 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZFP42
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.17133,858,632 - 133,866,138 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl7133,864,858 - 133,865,790 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037114,278,733 - 114,286,347 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zfp42
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476918,934,076 - 18,935,002 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476918,933,990 - 18,935,008 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ZFP42
305 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system
High
Medium
Low
Below cutoff 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000062645   ⟹   ENSSSCP00000038419
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl177,402,071 - 7,403,247 (-)Ensembl
RefSeq Acc Id: XM_003359865   ⟹   XP_003359913
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1177,401,729 - 7,409,027 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005672653   ⟹   XP_005672710
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1177,401,729 - 7,409,027 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005672654   ⟹   XP_005672711
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1177,401,729 - 7,409,027 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003359913 (Get FASTA)   NCBI Sequence Viewer  
  XP_005672710 (Get FASTA)   NCBI Sequence Viewer  
  XP_005672711 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein CAL69448 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005672711   ⟸   XM_005672654
- Sequence:
RefSeq Acc Id: XP_003359913   ⟸   XM_003359865
- Sequence:
RefSeq Acc Id: XP_005672710   ⟸   XM_005672653
- Sequence:
RefSeq Acc Id: ENSSSCP00000038419   ⟸   ENSSSCT00000062645
Protein Domains
C2H2-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000035444 Ensembl
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene ZFP42 ENTREZGENE
PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 42 HOMOLOG UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/TrEMBL
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt A0JKF2_PIG UniProtKB/TrEMBL
VGNC ID VGNC:96253 ENTREZGENE