H2BC15 (H2B clustered histone 15) - Rat Genome Database

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Gene: H2BC15 (H2B clustered histone 15) Sus scrofa
Analyze
Symbol: H2BC15
Name: H2B clustered histone 15
RGD ID: 14086608
Description: ENCODES a protein that exhibits DNA binding (inferred); protein heterodimerization activity (inferred); structural constituent of chromatin (inferred); INVOLVED IN antimicrobial humoral immune response mediated by antimicrobial peptide (ortholog); innate immune response in mucosa (ortholog); FOUND IN cytosol (ortholog); extracellular space (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: histone H2B type 1-N; LOC100621915
RGD Orthologs
Human
Mouse
Bonobo
Dog
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1721,606,754 - 21,610,955 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2723,110,568 - 23,111,082 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
H2BC15
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1721,606,754 - 21,610,955 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2723,110,568 - 23,111,082 (+)NCBISscrofa10.2Sscrofa10.2susScr3
H2BC15
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38627,838,569 - 27,839,110 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl627,838,545 - 27,855,709 (+)EnsemblGRCh38hg38GRCh38
GRCh37627,806,347 - 27,806,888 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36627,914,343 - 27,914,873 (+)NCBINCBI36Build 36hg18NCBI36
Build 34627,914,418 - 27,914,867NCBI
Celera629,412,400 - 29,412,930 (+)NCBICelera
Cytogenetic Map6p22.1NCBI
HuRef627,614,094 - 27,614,542 (+)NCBIHuRef
CHM1_1627,808,587 - 27,809,035 (+)NCBICHM1_1
T2T-CHM13v2.0627,708,242 - 27,708,783 (+)NCBIT2T-CHM13v2.0
H2bc15
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391321,938,246 - 21,938,723 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1321,938,293 - 21,938,673 (+)EnsemblGRCm39 Ensembl
GRCm381321,754,076 - 21,754,553 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1321,754,123 - 21,754,503 (+)EnsemblGRCm38mm10GRCm38
MGSCv371321,845,992 - 21,846,372 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361321,761,588 - 21,761,968 (+)NCBIMGSCv36mm8
Celera1322,029,612 - 22,029,992 (+)NCBICelera
Cytogenetic Map13A3.1NCBI
cM Map137.95NCBI
LOC100985638
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2542,481,228 - 42,502,436 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1638,483,019 - 38,503,445 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0627,667,886 - 27,685,282 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1628,342,891 - 28,356,723 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl628,343,094 - 28,370,373 (+)Ensemblpanpan1.1panPan2
LOC478743
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha3523,971,560 - 23,972,352 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0 Ensembl3524,178,247 - 24,181,892 (-)EnsemblROS_Cfam_1.0 Ensembl

Variants

.
Variants in H2BC15
164 total Variants

Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_013977505   ⟹   XP_013832959
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1721,606,754 - 21,610,955 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013832959 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000073852
  ENSSSCP00000073852.2
  ENSSSCP00070042093.1
Reference Protein Sequences
RefSeq Acc Id: XP_013832959   ⟸   XM_013977505
- UniProtKB: A0A5G2RG11 (UniProtKB/TrEMBL),   A0A4X1VM98 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
Histone H2A/H2B/H3


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000044013 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070024955 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000075485 ENTREZGENE
  ENSSSCT00000075485.2 UniProtKB/TrEMBL
  ENSSSCT00070049845.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.20.10 UniProtKB/TrEMBL
InterPro Histone-fold UniProtKB/TrEMBL
  Histone_H2A/H2B/H3 UniProtKB/TrEMBL
  Histone_H2B UniProtKB/TrEMBL
KEGG Report ssc:100621915 UniProtKB/TrEMBL
NCBI Gene LOC100621915 ENTREZGENE
PANTHER HISTONE H2B TYPE 1-J UniProtKB/TrEMBL
  HISTONE H2B TYPE 2-C-RELATED UniProtKB/TrEMBL
  PTHR23428 UniProtKB/TrEMBL
Pfam Histone UniProtKB/TrEMBL
PRINTS HISTONEH2B UniProtKB/TrEMBL
PROSITE HISTONE_H2B UniProtKB/TrEMBL
SMART H2B UniProtKB/TrEMBL
Superfamily-SCOP SSF47113 UniProtKB/TrEMBL
UniProt A0A480RS85_PIG UniProtKB/TrEMBL
  A0A4X1VM98 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2RG11 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:109823 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-13 H2BC15  H2B clustered histone 15  LOC100621915  histone H2B type 1-N  Symbol and/or name change 19259463 PROVISIONAL