ZNF331 (zinc finger protein 331) - Rat Genome Database

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Gene: ZNF331 (zinc finger protein 331) Sus scrofa
Analyze
Symbol: ZNF331
Name: zinc finger protein 331
RGD ID: 14085134
Description: ENCODES a protein that exhibits DNA binding (inferred); metal ion binding (inferred); INVOLVED IN regulation of DNA-templated transcription (inferred); ASSOCIATED WITH Arsenic Poisoning (ortholog); skin disease (ortholog); FOUND IN nucleus (inferred); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl656,595,913 - 56,611,337 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1656,595,906 - 56,611,447 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IBA,IEA)

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:30032202  


Genomics

Comparative Map Data
ZNF331
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl656,595,913 - 56,611,337 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1656,595,906 - 56,611,447 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ZNF331
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381953,503,235 - 53,580,269 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1953,519,527 - 53,580,269 (+)EnsemblGRCh38hg38GRCh38
GRCh371954,024,268 - 54,083,523 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361958,715,989 - 58,775,335 (+)NCBINCBI36Build 36hg18NCBI36
Build 341958,716,089 - 58,775,335NCBI
Celera1951,065,602 - 51,124,916 (+)NCBICelera
Cytogenetic Map19q13.42NCBI
HuRef1950,344,398 - 50,403,248 (+)NCBIHuRef
CHM1_11954,026,017 - 54,085,277 (+)NCBICHM1_1
T2T-CHM13v2.01956,583,411 - 56,659,843 (+)NCBIT2T-CHM13v2.0
Zfp719
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39743,228,988 - 43,243,134 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl743,229,034 - 43,242,659 (+)EnsemblGRCm39 Ensembl
GRCm38743,579,559 - 43,593,710 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl743,579,610 - 43,593,235 (+)EnsemblGRCm38mm10GRCm38
MGSCv37750,834,956 - 50,849,080 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36743,447,628 - 43,461,752 (+)NCBIMGSCv36mm8
Celera739,043,207 - 39,057,331 (+)NCBICelera
Cytogenetic Map7B3NCBI
cM Map728.25NCBI
Znf331
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955604383,914 - 409,033 (-)NCBIChiLan1.0ChiLan1.0
ZNF331
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22059,537,095 - 59,595,364 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11961,457,951 - 61,517,581 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01950,465,659 - 50,524,594 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11959,315,619 - 59,374,805 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1959,315,619 - 59,374,805 (+)Ensemblpanpan1.1panPan2
ZNF331
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11103,710,527 - 103,724,523 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1103,710,531 - 103,793,736 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1103,575,242 - 103,589,239 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01104,166,225 - 104,180,327 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1104,158,065 - 104,249,934 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11103,797,726 - 103,811,753 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01103,560,073 - 103,574,123 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01104,279,592 - 104,293,618 (-)NCBIUU_Cfam_GSD_1.0
Dog Cytomap1q33NCBI
Znf331
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244093493,007,179 - 3,036,629 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493705567,982 - 74,103 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493705569,281 - 93,924 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF331
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1646,257,649 - 46,299,337 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607326,294,685 - 26,336,796 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Znf331
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248322,667,198 - 2,690,390 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248322,667,646 - 2,677,690 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ZNF331
37 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 3 5
Low 10 4 5 2 18 2 3 3
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000059412   ⟹   ENSSSCP00000039222
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl656,599,479 - 56,610,153 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000094385   ⟹   ENSSSCP00000077692
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl656,595,913 - 56,611,337 (-)Ensembl
RefSeq Acc Id: XM_021097269   ⟹   XP_020952928
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1656,595,906 - 56,611,438 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021097270   ⟹   XP_020952929
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1656,598,240 - 56,611,257 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021097271   ⟹   XP_020952930
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1656,598,213 - 56,610,975 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021097272   ⟹   XP_020952931
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1656,598,240 - 56,610,841 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021097273   ⟹   XP_020952932
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1656,595,906 - 56,611,447 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_020952932   ⟸   XM_021097273
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_020952928   ⟸   XM_021097269
- Peptide Label: isoform X1
- UniProtKB: A0A4X1TYP0 (UniProtKB/TrEMBL),   A0A480VWU4 (UniProtKB/TrEMBL),   A0A8D0RAC4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020952930   ⟸   XM_021097271
- Peptide Label: isoform X1
- UniProtKB: A0A4X1TYP0 (UniProtKB/TrEMBL),   A0A480VWU4 (UniProtKB/TrEMBL),   A0A8D0RAC4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020952929   ⟸   XM_021097270
- Peptide Label: isoform X1
- UniProtKB: A0A4X1TYP0 (UniProtKB/TrEMBL),   A0A480VWU4 (UniProtKB/TrEMBL),   A0A8D0RAC4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020952931   ⟸   XM_021097272
- Peptide Label: isoform X1
- UniProtKB: A0A4X1TYP0 (UniProtKB/TrEMBL),   A0A480VWU4 (UniProtKB/TrEMBL),   A0A8D0RAC4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000039222   ⟸   ENSSSCT00000059412
RefSeq Acc Id: ENSSSCP00000077692   ⟸   ENSSSCT00000094385
Protein Domains
C2H2-type   KRAB


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000031793 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005041845 UniProtKB/TrEMBL
  ENSSSCG00015073606 UniProtKB/TrEMBL
  ENSSSCG00025017759 UniProtKB/TrEMBL
  ENSSSCG00030050917 UniProtKB/TrEMBL
  ENSSSCG00035046107 UniProtKB/TrEMBL
  ENSSSCG00040005660 UniProtKB/TrEMBL
  ENSSSCG00045005362 UniProtKB/TrEMBL
  ENSSSCG00050069200 UniProtKB/TrEMBL
  ENSSSCG00055013702 UniProtKB/TrEMBL
  ENSSSCG00060046805 UniProtKB/TrEMBL
  ENSSSCG00065063279 UniProtKB/TrEMBL
  ENSSSCG00070012652 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000059412 ENTREZGENE
  ENSSSCT00000059412.3 UniProtKB/TrEMBL
  ENSSSCT00000094385 ENTREZGENE
  ENSSSCT00000094385.1 UniProtKB/TrEMBL
  ENSSSCT00005067088.1 UniProtKB/TrEMBL
  ENSSSCT00005067103.1 UniProtKB/TrEMBL
  ENSSSCT00005067106.1 UniProtKB/TrEMBL
  ENSSSCT00005067114.1 UniProtKB/TrEMBL
  ENSSSCT00015099203.1 UniProtKB/TrEMBL
  ENSSSCT00025024066.1 UniProtKB/TrEMBL
  ENSSSCT00030070996.1 UniProtKB/TrEMBL
  ENSSSCT00035061294.1 UniProtKB/TrEMBL
  ENSSSCT00040007478.1 UniProtKB/TrEMBL
  ENSSSCT00045008897.1 UniProtKB/TrEMBL
  ENSSSCT00050094423.1 UniProtKB/TrEMBL
  ENSSSCT00055026956.1 UniProtKB/TrEMBL
  ENSSSCT00060063563.1 UniProtKB/TrEMBL
  ENSSSCT00065086802.1 UniProtKB/TrEMBL
  ENSSSCT00070024751.1 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.140 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro KRAB UniProtKB/TrEMBL
  KRAB_dom_sf UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene ZNF331 ENTREZGENE
PANTHER IP01015P-RELATED UniProtKB/TrEMBL
  ZINC FINGER PROTEIN UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 283 UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 345-RELATED UniProtKB/TrEMBL
Pfam KRAB UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
  zf-C2H2_6 UniProtKB/TrEMBL
PROSITE KRAB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART KRAB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF109640 UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A0A286ZHY5_PIG UniProtKB/TrEMBL
  A0A480VWU4 ENTREZGENE
  A0A4X1TYP0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0RAC4 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A480VWU4 UniProtKB/TrEMBL