DHX58 (DExH-box helicase 58) - Rat Genome Database

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Gene: DHX58 (DExH-box helicase 58) Sus scrofa
Analyze
Symbol: DHX58
Name: DExH-box helicase 58
RGD ID: 14083196
Description: ENCODES a protein that exhibits ATP binding (inferred); ATP hydrolysis activity (inferred); DNA binding (inferred); INVOLVED IN response to bacterium (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN cytoplasm (inferred); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: ATP-dependent RNA helicase DHX58; LGP2; probable ATP-dependent RNA helicase DHX58
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1220,647,699 - 20,656,683 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11220,647,698 - 20,656,691 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21220,937,850 - 20,946,843 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:20331611   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
DHX58
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1220,647,699 - 20,656,683 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11220,647,698 - 20,656,691 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21220,937,850 - 20,946,843 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DHX58
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381742,101,411 - 42,112,714 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1742,101,404 - 42,112,714 (-)EnsemblGRCh38hg38GRCh38
GRCh371740,253,429 - 40,264,732 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361737,506,948 - 37,518,277 (-)NCBINCBI36Build 36hg18NCBI36
Celera1736,908,460 - 36,919,789 (-)NCBICelera
Cytogenetic Map17q21.2NCBI
HuRef1736,018,500 - 36,029,831 (-)NCBIHuRef
CHM1_11740,489,197 - 40,500,526 (-)NCBICHM1_1
T2T-CHM13v2.01742,957,915 - 42,969,232 (-)NCBIT2T-CHM13v2.0
Dhx58
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911100,585,710 - 100,595,165 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11100,585,710 - 100,595,097 (-)EnsemblGRCm39 Ensembl
GRCm3811100,694,884 - 100,704,271 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11100,694,884 - 100,704,271 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711100,556,198 - 100,565,585 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611100,510,974 - 100,520,361 (-)NCBIMGSCv36mm8
Celera11111,311,383 - 111,320,770 (-)NCBICelera
Cytogenetic Map11DNCBI
cM Map1163.52NCBI
Dhx58
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81086,120,677 - 86,132,095 (-)NCBIGRCr8
mRatBN7.21085,620,352 - 85,631,776 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1085,620,357 - 85,631,525 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1090,656,819 - 90,667,976 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01090,135,311 - 90,146,556 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01085,528,601 - 85,539,768 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01088,599,722 - 88,611,562 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1088,599,680 - 88,611,105 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01088,393,935 - 88,405,328 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41089,630,145 - 89,641,311 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11089,644,843 - 89,655,680 (-)NCBI
Celera1084,336,054 - 84,347,209 (-)NCBICelera
Cytogenetic Map10q31NCBI
Dhx58
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545116,185,510 - 16,191,719 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545116,186,263 - 16,191,928 (-)NCBIChiLan1.0ChiLan1.0
DHX58
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21922,871,281 - 22,882,643 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11724,761,402 - 24,772,741 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01715,203,216 - 15,214,559 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11715,424,444 - 15,435,588 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1715,424,437 - 15,435,582 (+)Ensemblpanpan1.1panPan2
DHX58
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1920,787,470 - 20,795,593 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl920,787,541 - 20,795,361 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha920,248,380 - 20,256,796 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0921,506,211 - 21,514,628 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl921,506,251 - 21,514,678 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1920,291,486 - 20,299,903 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0920,558,608 - 20,567,025 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0920,661,655 - 20,670,075 (+)NCBIUU_Cfam_GSD_1.0
Dhx58
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560220,125,092 - 20,134,409 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649016,940,540 - 16,950,085 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649016,940,776 - 16,949,836 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DHX58
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11664,154,832 - 64,166,480 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1664,154,984 - 64,166,500 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607734,971,770 - 34,983,754 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dhx58
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247951,787,958 - 1,794,692 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247951,787,958 - 1,793,475 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in DHX58
245 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 10 2 3 5 21 3 3
Below cutoff 2 2 2 2

Sequence


RefSeq Acc Id: ENSSSCT00000018960   ⟹   ENSSSCP00000018455
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1220,647,699 - 20,656,683 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000033560   ⟹   ENSSSCP00000029007
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1220,647,908 - 20,656,673 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000035155   ⟹   ENSSSCP00000030733
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1220,647,908 - 20,656,664 (+)Ensembl
RefSeq Acc Id: NM_001199132   ⟹   NP_001186061
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11220,647,753 - 20,656,605 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005668814   ⟹   XP_005668871
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11220,647,705 - 20,656,691 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005668815   ⟹   XP_005668872
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11220,647,698 - 20,656,691 (+)NCBI
Sequence:
RefSeq Acc Id: XP_005668872   ⟸   XM_005668815
- Peptide Label: isoform X2
- UniProtKB: A0A8D0RTV0 (UniProtKB/TrEMBL),   A0A8D1DUJ7 (UniProtKB/TrEMBL),   A0A8D0NI11 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005668871   ⟸   XM_005668814
- Peptide Label: isoform X1
- UniProtKB: F1S0P6 (UniProtKB/TrEMBL),   A0A4X1U1Q9 (UniProtKB/TrEMBL),   K7GMB7 (UniProtKB/TrEMBL),   A0A8D0RTV0 (UniProtKB/TrEMBL),   A0A8D1DUJ7 (UniProtKB/TrEMBL),   A0A8D0NI11 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001186061   ⟸   NM_001199132
- UniProtKB: E3NZJ4 (UniProtKB/TrEMBL),   A0A8D0RTV0 (UniProtKB/TrEMBL),   A0A8D1DUJ7 (UniProtKB/TrEMBL),   A0A8D0NI11 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000030733   ⟸   ENSSSCT00000035155
RefSeq Acc Id: ENSSSCP00000018455   ⟸   ENSSSCT00000018960
RefSeq Acc Id: ENSSSCP00000029007   ⟸   ENSSSCT00000033560

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000017416 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005018717 UniProtKB/TrEMBL
  ENSSSCG00015032841 UniProtKB/TrEMBL
  ENSSSCG00025033022 UniProtKB/TrEMBL
  ENSSSCG00035019984 UniProtKB/TrEMBL
  ENSSSCG00040020700 UniProtKB/TrEMBL
  ENSSSCG00045038142 UniProtKB/TrEMBL
  ENSSSCG00055029324 UniProtKB/TrEMBL
  ENSSSCG00060014633 UniProtKB/TrEMBL
  ENSSSCG00065006955 UniProtKB/TrEMBL
  ENSSSCG00070014443 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000018960 ENTREZGENE
  ENSSSCT00000018960.6 UniProtKB/TrEMBL
  ENSSSCT00000035155 ENTREZGENE
  ENSSSCT00000035155.4 UniProtKB/TrEMBL
  ENSSSCT00005029514.1 UniProtKB/TrEMBL
  ENSSSCT00005029540.1 UniProtKB/TrEMBL
  ENSSSCT00005029593.1 UniProtKB/TrEMBL
  ENSSSCT00015043492.1 UniProtKB/TrEMBL
  ENSSSCT00015043736.1 UniProtKB/TrEMBL
  ENSSSCT00015043902.1 UniProtKB/TrEMBL
  ENSSSCT00015044285.1 UniProtKB/TrEMBL
  ENSSSCT00015044453.1 UniProtKB/TrEMBL
  ENSSSCT00025045039.1 UniProtKB/TrEMBL
  ENSSSCT00035025934.1 UniProtKB/TrEMBL
  ENSSSCT00035025936.1 UniProtKB/TrEMBL
  ENSSSCT00035025938.1 UniProtKB/TrEMBL
  ENSSSCT00040028132.1 UniProtKB/TrEMBL
  ENSSSCT00040028134.1 UniProtKB/TrEMBL
  ENSSSCT00045066029.1 UniProtKB/TrEMBL
  ENSSSCT00045066080.1 UniProtKB/TrEMBL
  ENSSSCT00055058219.1 UniProtKB/TrEMBL
  ENSSSCT00055058248.1 UniProtKB/TrEMBL
  ENSSSCT00060019476.1 UniProtKB/TrEMBL
  ENSSSCT00060019486.1 UniProtKB/TrEMBL
  ENSSSCT00065009339.1 UniProtKB/TrEMBL
  ENSSSCT00070028381.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1320.30 UniProtKB/TrEMBL
  2.170.150.30 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
InterPro Helicase/UvrB_N UniProtKB/TrEMBL
  Helicase_ATP-bd UniProtKB/TrEMBL
  Helicase_C UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  RIG-I_C UniProtKB/TrEMBL
  RLR_C_sf UniProtKB/TrEMBL
  RLR_CTR UniProtKB/TrEMBL
KEGG Report ssc:100524520 UniProtKB/TrEMBL
NCBI Gene DHX58 ENTREZGENE
PANTHER ATP-DEPENDENT RNA HELICASE DHX58-RELATED UniProtKB/TrEMBL
  HELICASE WITH DEATH DOMAIN-RELATED UniProtKB/TrEMBL
Pfam Helicase_C UniProtKB/TrEMBL
  ResIII UniProtKB/TrEMBL
  RIG-I_C UniProtKB/TrEMBL
  RIG-I_C-RD UniProtKB/TrEMBL
PROSITE HELICASE_ATP_BIND_1 UniProtKB/TrEMBL
  HELICASE_CTER UniProtKB/TrEMBL
  RLR_CTR UniProtKB/TrEMBL
SMART DEXDc UniProtKB/TrEMBL
  HELICc UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A4X1U1Q9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0IW55_PIG UniProtKB/TrEMBL
  A0A8D0NF23_PIG UniProtKB/TrEMBL
  A0A8D0NI11 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0NIS9_PIG UniProtKB/TrEMBL
  A0A8D0NIY6_PIG UniProtKB/TrEMBL
  A0A8D0NJK6_PIG UniProtKB/TrEMBL
  A0A8D0RTV0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0Z4U2_PIG UniProtKB/TrEMBL
  A0A8D1DUJ7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1DV76_PIG UniProtKB/TrEMBL
  A0A8D1JGD6_PIG UniProtKB/TrEMBL
  E3NZJ4 ENTREZGENE, UniProtKB/TrEMBL
  F1S0P6 ENTREZGENE, UniProtKB/TrEMBL
  K7GMB7 ENTREZGENE
  K7GS53_PIG UniProtKB/TrEMBL
UniProt Secondary K7GMB7 UniProtKB/TrEMBL
VGNC ID VGNC:87297 ENTREZGENE