SPON2 (spondin 2) - Rat Genome Database

Name: SPON2
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: SPON2 (spondin 2) Sus scrofa

Analyze

Symbol:

SPON2

Name:

spondin 2

RGD ID:

14075088

Description:

ENCODES a protein that exhibits antigen binding (ortholog); lipopolysaccharide binding (ortholog); signaling receptor binding (ortholog); INVOLVED IN cell adhesion (ortholog); cellular response to lipopolysaccharide (ortholog); cellular response to platelet-derived growth factor stimulus (ortholog); ASSOCIATED WITH Carotid Artery Injuries (ortholog); cherubism (ortholog); Neointima (ortholog); FOUND IN extracellular matrix (ortholog); extracellular space (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

spondin-2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SPON2 (spondin 2)	HGNC	Ensembl, NCBI, OrthoDB
Mus musculus (house mouse):	Spon2 (spondin 2, extracellular matrix protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Spon2 (spondin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Spon2 (spondin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SPON2 (spondin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SPON2 (spondin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Spon2 (spondin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SPON2 (spondin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Spon2 (spondin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	8	447,180 - 450,538 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	8	447,176 - 450,829 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Carotid Artery Injuries (ISO)

cherubism (ISO)

Neointima (ISO)

Prostatic Neoplasms (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell adhesion (IBA,IEA,ISO)

cellular response to lipopolysaccharide (ISO)

cellular response to platelet-derived growth factor stimulus (ISO)

defense response to bacterium (ISO)

defense response to fungus (ISO)

defense response to virus (ISO)

induction of bacterial agglutination (ISO)

innate immune response (ISO)

mast cell mediated immunity (ISO)

opsonization (ISO)

positive regulation of interleukin-6 production (ISO)

positive regulation of macrophage cytokine production (ISO)

positive regulation of tumor necrosis factor production (ISO)

response to lipopolysaccharide (ISO)

vascular associated smooth muscle cell proliferation (ISO)

Cellular Component

extracellular matrix (IBA,ISO)

extracellular region (IEA)

extracellular space (ISO)

plasma membrane (IEA)

Molecular Function

antigen binding (ISO)

lipopolysaccharide binding (ISO)

metal ion binding (IEA)

protein binding (ISO)

signaling receptor binding (ISO)

References

Additional References at PubMed

PMID:14681463	PMID:17145712	PMID:30032202

Genomics

Comparative Map Data

SPON2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	8	447,180 - 450,538 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	8	447,176 - 450,829 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

SPON2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	1,166,932 - 1,208,844 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	4	1,166,932 - 1,208,962 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	4	1,160,720 - 1,202,632 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	1,150,723 - 1,156,597 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	4	1,150,552 - 1,156,427	NCBI
Celera	4	1,093,221 - 1,099,481 (-)	NCBI		Celera
Cytogenetic Map	4	p16.3	NCBI
HuRef	4	1,129,322 - 1,171,336 (-)	NCBI		HuRef
CHM1_1	4	1,160,505 - 1,202,404 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	4	1,165,604 - 1,208,039 (-)	NCBI		T2T-CHM13v2.0

Spon2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	33,370,862 - 33,375,596 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	33,355,528 - 33,375,799 (-)	Ensembl		GRCm39 Ensembl
GRCm38	5	33,213,518 - 33,218,254 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	33,198,184 - 33,218,455 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	33,556,167 - 33,560,887 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	33,530,375 - 33,535,040 (-)	NCBI		MGSCv36	mm8
Celera	5	30,692,605 - 30,697,322 (-)	NCBI		Celera
Cytogenetic Map	5	B1	NCBI
cM Map	5	17.5	NCBI

Spon2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	81,713,070 - 81,742,510 (+)	NCBI		GRCr8
mRatBN7.2	14	77,505,695 - 77,518,001 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	77,511,901 - 77,517,996 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	14	81,954,278 - 81,960,081 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	83,194,828 - 83,200,631 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	79,640,141 - 79,645,944 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	82,815,158 - 82,824,529 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	82,818,663 - 82,824,599 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	14	83,501,025 - 83,510,376 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.1	14	82,975,275 - 82,978,160 (-)	NCBI
Celera	14	76,428,066 - 76,433,860 (+)	NCBI		Celera
Cytogenetic Map	14	q21	NCBI

Spon2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955514	596,829 - 604,051 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955514	598,840 - 603,390 (-)	NCBI	ChiLan1.0	ChiLan1.0

SPON2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	3	1,497,529 - 1,521,340 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	4	1,458,112 - 1,469,560 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	4	1,309,473 - 1,351,529 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	4	1,195,307 - 1,201,168 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	1,195,848 - 1,200,400 (-)	Ensembl	panpan1.1		panPan2

SPON2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	3	91,411,245 - 91,421,245 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	3	93,879,686 - 93,886,426 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	3	92,411,007 - 92,417,759 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	3	91,584,382 - 91,591,120 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	3	91,637,257 - 91,643,961 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	3	92,021,312 - 92,028,059 (+)	NCBI		UU_Cfam_GSD_1.0

Spon2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405285	68,385,733 - 68,391,985 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936477	22,087,394 - 22,093,723 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936477	22,087,450 - 22,093,677 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SPON2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	27	47,609,170 - 47,615,507 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	27	47,609,922 - 47,615,496 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666051	3,986,077 - 3,992,451 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Spon2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624755	26,045,493 - 26,053,476 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624755	26,045,617 - 26,049,951 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in SPON2
16 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	hemolymphoid system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system
High
Medium
Low	8	4	2	5	2	2	2	2	1
Below cutoff	2		1			12		1	1

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_021100861	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000062	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK350759	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01090408	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSSCT00000059974 ⟹ ENSSSCP00000045991

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	8	447,180 - 450,538 (-)	Ensembl

RefSeq Acc Id:

XM_021100861 ⟹ XP_020956520

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	8	447,176 - 450,829 (-)	NCBI

Sequence:

show sequence

ACTAGGAAGGGCCTGATGGGAAGGAGGGGACTGGGGGGAGGGGAGGGCCAGGGGAAGACAAAGG
AAGGGGTGCGGCGAGTGGCCCCCGCCCAGGGGAGGAGTGACCTCAGCCCGAGCGGCATCTGTTC
GGCGTCAGAGGCCGGCGGGCGGCCAGGCGCTCCGGCACCCAGCCCCTTCCTCTCCCTCTCCCCG
CGTCCCATCCAGCGCTCTCCGCGGTGGAGGCCCTGGGGCCTCATTGGCCGCCCGGGCGCTGACC
GCGGCATAAATTGGAGCTCTGGGCGCCTGCGGGGACCTTTGGCCGCCCACAGCCCGGCTGCCAG
CCCCTCCCGTCGGTCCTGCTGGGTGATGGGAACCGTGAGTGCGGTCGCCCCCCGGGCCCGCGCC
CTCTGGGCCCTCCTCCTGGCCTCTCTTGGCACCGCTGCCGGGCAGCCGCTGGGAGGAGAGTCCG
TGTGCACGGCCCAGCCCCTGGCCAAGTATGGCATCACCTTCACGGGCAAGTGGAGCCAGGCGGC
CTTCCCCAAGCAGTACCCGCTGTTCCGCCCGCCCGCGCAGTGGTCTGCCCTCCTGGGGGCAGCG
CACAGCTCTGACTACAGCCTGTGGAGGAAGGACCAGTATGTCAGCAATGGGCTGAGGGACTTCG
TGGAGCGGGGCGAGGCCTGGGCCCTGATGAGGGAGATGGAGGCGGCCGGGGAGAAGCTGCAGAG
CGTGCACGGCGTGTTCTCCGCCCCCGCCGTGCCCAGCGGCACCGGGCAGACCTCCACGGAGCTG
GAGGTCCACTCCAGGCACTCGCTCGTGTCCTTCGCAGTCCGCATCATTCCCAGCCCCGACTGGT
TTGTGGGCGTCGACAGCCTGGACCTGTGTGACGGGGACCACTGGAGGGAGCAGGTGGCCGTGGA
CCTCCACCCCTACGACGCCGGGACCGACAGCGGCTTCACCTTCTCCTCTCCCAACTTCGCGACT
ATCCCGCAGGACACGGTGACCGAGATTACAGCCTCCTCTCCCAACCACCCCGCAAACTCCTTCT
TCTACCCGCGGCTGAAGGCCCTGCCTCCCATCGCCAGAGTGACCCTGGTGCAGCTCCGGCAGAG
CCCCAGGGCCTTCGTCCCGCCCGCCCTGGACCTGGCGGGCGGGGGCAATGAGATCGTGGACAGC
CTCCCAGTTCCAGAAACGCCGCTGGACTGCGAGGTCTCCCTGTGGTCGTCCTGGGGGCTGTGCG
CGGGCCCGTGCGGGCAGCTGGGAGCCCGGAGCAGGACTCGCTACGTGCGCGTGCAGCCCGCCAA
CCACGGGGCGCCGTGCCCGGGGCTGGAGGAGGAGGCCGAGTGCGTCCCGGACAACTGCGTCTGA
CAGCCGCGCCCGCGCCCGCGCCCGCGCCCCGGCGGCCTCGCGCTCGGCGCCCGCGCGCTCCGCG
CACCCGCGCTACCTCAGGCCCGGCCGCCAGGCGGCGCTGCAGCGGGTCCCCGGCGGGAGACCGA
GGCGACCTGCTGCGTCCCCATCCCCGCTCTTGAATAAAGATCGCCGTCTCCGGCCAGG

hide sequence

Protein Sequences


Protein RefSeqs	XP_020956520	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000045991.3
	ENSSSCP00025031152.1
	ENSSSCP00030034319.1
	ENSSSCP00040044137.1
	ENSSSCP00050001921.1
	ENSSSCP00055016151.1
	ENSSSCP00060018062.1
	ENSSSCP00065040407.1
	ENSSSCP00070009368.1

RefSeq Acc Id:

XP_020956520 ⟸ XM_021100861

- UniProtKB:

A0A481AED0 (UniProtKB/TrEMBL), A0A4X1T3I1 (UniProtKB/TrEMBL), A0A481DBB4 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MGRRGLGGGEGQGKTKEGVRRVAPAQGRSDLSPSGICSASEAGGRPGAPAPSPFLSLSPRPIQR
SPRWRPWGLIGRPGADRGINWSSGRLRGPLAAHSPAASPSRRSCWVMGTVSAVAPRARALWALL
LASLGTAAGQPLGGESVCTAQPLAKYGITFTGKWSQAAFPKQYPLFRPPAQWSALLGAAHSSDY
SLWRKDQYVSNGLRDFVERGEAWALMREMEAAGEKLQSVHGVFSAPAVPSGTGQTSTELEVHSR
HSLVSFAVRIIPSPDWFVGVDSLDLCDGDHWREQVAVDLHPYDAGTDSGFTFSSPNFATIPQDT
VTEITASSPNHPANSFFYPRLKALPPIARVTLVQLRQSPRAFVPPALDLAGGGNEIVDSLPVPE
TPLDCEVSLWSSWGLCAGPCGQLGARSRTRYVRVQPANHGAPCPGLEEEAECVPDNCV

hide sequence

RefSeq Acc Id:

ENSSSCP00000045991 ⟸ ENSSSCT00000059974

Protein Domains

Spondin

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000039488	Ensembl, UniProtKB/TrEMBL
	ENSSSCG00025052561	UniProtKB/TrEMBL
	ENSSSCG00030053857	UniProtKB/TrEMBL
	ENSSSCG00040071787	UniProtKB/TrEMBL
	ENSSSCG00050003545	UniProtKB/TrEMBL
	ENSSSCG00055010453	UniProtKB/TrEMBL
	ENSSSCG00060031342	UniProtKB/TrEMBL
	ENSSSCG00065067274	UniProtKB/TrEMBL
	ENSSSCG00070005962	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000059974.3	UniProtKB/TrEMBL
	ENSSSCT00025071943.1	UniProtKB/TrEMBL
	ENSSSCT00030075072.1	UniProtKB/TrEMBL
	ENSSSCT00040098725.1	UniProtKB/TrEMBL
	ENSSSCT00050004756.1	UniProtKB/TrEMBL
	ENSSSCT00055020437.1	UniProtKB/TrEMBL
	ENSSSCT00060042415.1	UniProtKB/TrEMBL
	ENSSSCT00065092339.1	UniProtKB/TrEMBL
	ENSSSCT00070011362.1	UniProtKB/TrEMBL
Gene3D-CATH	2.20.100.10	UniProtKB/TrEMBL
	2.60.40.2130	UniProtKB/TrEMBL
InterPro	Spondin_N	UniProtKB/TrEMBL
	Spondin_N_sf	UniProtKB/TrEMBL
	TSP1_rpt	UniProtKB/TrEMBL
	TSP1_rpt_sf	UniProtKB/TrEMBL
	TSP1_spondin_dom	UniProtKB/TrEMBL
NCBI Gene	SPON2	ENTREZGENE
PANTHER	SPONDIN	UniProtKB/TrEMBL
	TSP1_SPONDIN DOMAIN-CONTAINING PROTEIN	UniProtKB/TrEMBL
Pfam	Spond_N	UniProtKB/TrEMBL
	TSP1_spondin	UniProtKB/TrEMBL
PROSITE	SPONDIN	UniProtKB/TrEMBL
	TSP1	UniProtKB/TrEMBL
SMART	TSP1	UniProtKB/TrEMBL
Superfamily-SCOP	SSF82895	UniProtKB/TrEMBL
UniProt	A0A287APN4_PIG	UniProtKB/TrEMBL
	A0A481AED0	ENTREZGENE, UniProtKB/TrEMBL
	A0A481DBB4	ENTREZGENE, UniProtKB/TrEMBL
	A0A4X1T3I1	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:93416	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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